The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	94923	140138	2882275	head,capsid,integrase,portal,terminase,tail,holin,protease	Staphylococcus_phage(92.54%)	67	86356:86371	145562:145577
86356:86371	attL	ATTTTCTAATAAATGA	NA	NA	NA	NA
AVR99535.1|94923_96378_-	CHAP domain-containing protein	NA	A0A0N6WMR3	Staphylococcus_phage	99.6	7.5e-289
AVR99536.1|96389_96692_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
AVR99537.1|96827_97127_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
AVR99538.1|97172_97337_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
AVR99539.1|97329_97719_-	hypothetical protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
AVR99540.1|97718_99185_-	DUF2479 domain-containing protein	NA	A0A2I6PES7	Staphylococcus_phage	99.8	5.8e-273
AVR99541.1|99184_101095_-	hypothetical protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
AVR99542.1|101110_101401_-	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
AVR99543.1|101400_102984_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	99.8	9.3e-309
AVR99544.1|102992_103817_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
AVR99545.1|103816_110017_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.2	0.0e+00
AVR99546.1|110030_110189_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
AVR99547.1|110230_110581_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
AVR99548.1|110638_111094_-|tail	phage tail protein	tail	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
AVR99549.1|111185_111827_-|tail	phage tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
AVR99550.1|111861_112257_-	DUF3168 domain-containing protein	NA	Q4ZCL5	Staphylococcus_virus	100.0	8.8e-67
AVR99551.1|112257_112659_-	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	99.2	2.3e-67
AVR99552.1|112655_112988_-	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	100.0	6.2e-58
AVR99553.1|112999_113278_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
AVS02133.1|113346_114510_-|capsid	phage major capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	100.0	9.4e-218
AVR99554.1|114521_115295_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	98.4	3.9e-135
AVR99555.1|115278_116517_-|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	99.8	4.5e-234
AVR99556.1|116521_118213_-|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
AVR99557.1|118202_118508_-|terminase	phage terminase small subunit P27 family	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
AVR99558.1|118635_118950_-	HNH endonuclease	NA	Q8SDQ2	Staphylococcus_virus	100.0	1.9e-56
AVR99559.1|119106_119544_-	transcriptional regulator	NA	A0A2K9VBV2	Staphylococcus_phage	99.3	7.9e-77
AVR99560.1|119556_120924_-	ATP-dependent helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.9e-263
AVS02134.1|120904_121195_-	VRR-NUC domain-containing protein	NA	M1T308	Staphylococcus_phage	100.0	4.9e-51
AVR99561.1|121328_121433_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	97.1	1.8e-11
AVR99562.1|121535_123983_-	hypothetical protein	NA	Q4ZCG0	Staphylococcus_virus	99.3	0.0e+00
AVR99563.1|124037_124244_+	hypothetical protein	NA	A0A1X9IGZ9	Staphylococcus_phage	100.0	7.6e-30
AVR99564.1|124270_124471_-	DUF1514 domain-containing protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
AVR99565.1|124538_124691_-	transcriptional regulator	NA	M9QRS7	Staphylococcus_phage	100.0	7.6e-19
AVR99566.1|124687_125083_-	hypothetical protein	NA	M9QX07	Staphylococcus_phage	99.2	1.7e-65
AVR99567.1|125066_125303_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
AVR99568.1|125327_125564_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	100.0	1.1e-35
AVR99569.1|125600_126143_-	dUTP pyrophosphatase	NA	Q4ZD81	Staphylococcus_virus	100.0	1.5e-96
AVR99570.1|126147_126384_-	hypothetical protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
AVR99571.1|126376_126685_-	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	100.0	8.1e-52
AVR99572.1|126681_127029_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
AVR99573.1|127025_127427_-	hypothetical protein	NA	A0A0N7E0T5	Staphylococcus_phage	99.2	4.6e-71
AVR99574.1|127429_127636_-	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
AVR99575.1|127649_127892_-	hypothetical protein	NA	Q8SDR2	Staphylococcus_virus	98.8	3.6e-39
AVR99576.1|127906_128107_-	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
AVR99577.1|128109_128367_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
AVR99578.1|128366_128768_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
AVR99579.1|128767_128953_-	DUF3113 domain-containing protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
AVS02135.1|128965_130918_-	DNA polymerase	NA	M9QT72	Staphylococcus_phage	99.2	0.0e+00
AVR99580.1|130986_131544_-	DUF2815 domain-containing protein	NA	A0A2K9VBT2	Staphylococcus_phage	95.7	1.3e-92
AVR99581.1|131570_132737_-	DUF2800 domain-containing protein	NA	M9QWZ9	Staphylococcus_phage	99.5	1.2e-220
AVR99582.1|132733_133096_-	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	100.0	4.9e-56
AVR99583.1|133110_133434_-	TrmB family transcriptional regulator	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
AVR99584.1|133512_133674_-	DUF1270 domain-containing protein	NA	A9CR58	Staphylococcus_phage	98.1	1.1e-20
AVR99585.1|133686_133950_-	helix-turn-helix domain-containing protein	NA	M9QRR6	Staphylococcus_phage	100.0	9.7e-46
AVR99586.1|133974_134190_-	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
AVR99587.1|134244_134610_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	99.2	1.2e-62
AVR99588.1|134578_134824_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
AVR99589.1|134879_135089_+	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
AVR99590.1|135078_135222_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
AVR99591.1|135250_136027_-	transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	100.0	1.1e-140
AVR99592.1|136040_136277_-	XRE family transcriptional regulator	NA	A0A2I6PD81	Staphylococcus_phage	100.0	1.5e-37
AVR99593.1|136428_136743_+	XRE family transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
AVR99594.1|136755_137217_+	toxin	NA	A0A2K9VBR7	Staphylococcus_phage	100.0	1.2e-83
AVR99595.1|137234_137819_+	hypothetical protein	NA	A0A2I6PD77	Staphylococcus_phage	99.5	6.9e-68
AVR99596.1|138049_138196_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	93.8	1.7e-15
AVR99597.1|138192_138807_-	ATPase	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
AVR99598.1|138932_140138_+|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	99.0	1.6e-220
145562:145577	attR	TCATTTATTAGAAAAT	NA	NA	NA	NA
>prophage 2
CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	1233439	1316014	2882275	head,capsid,integrase,portal,terminase,tail,holin,protease	Staphylococcus_phage(84.42%)	108	1243560:1243577	1269334:1269351
AVS00579.1|1233439_1234183_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVS00580.1|1234357_1234642_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
AVS00581.1|1234717_1236334_+	molecular chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
AVS00582.1|1236874_1237054_+	hypothetical protein	NA	NA	NA	NA	NA
AVS02179.1|1237335_1237677_+	hypothetical protein	NA	C8CH40	Staphylococcus_phage	47.8	3.3e-22
AVS00583.1|1238215_1239523_-	potassium transporter KtrB	NA	NA	NA	NA	NA
AVS00584.1|1239598_1239781_+	hypothetical protein	NA	NA	NA	NA	NA
AVS00585.1|1239905_1241129_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AVS00586.1|1241560_1242616_+	succinyl-diaminopimelate desuccinylase	NA	A0A2I6PER8	Staphylococcus_phage	35.4	8.7e-37
AVS00587.1|1242637_1243654_+	beta-channel forming cytolysin	NA	A0A2I6PER8	Staphylococcus_phage	29.3	1.1e-25
1243560:1243577	attL	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
AVS00588.1|1244797_1245835_-|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	99.4	1.1e-177
AVS02180.1|1246025_1246739_-	toxin MazF	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
AVS00589.1|1246817_1247000_-	hypothetical protein	NA	R9QT81	Staphylococcus_phage	100.0	5.3e-27
AVS00590.1|1247155_1247854_-	hypothetical protein	NA	A0A1B0Y2S3	Lactobacillus_phage	29.8	4.4e-13
AVS00591.1|1248035_1248668_-	XRE family transcriptional regulator	NA	Q4ZB06	Staphylococcus_virus	90.4	1.9e-103
AVS00592.1|1248821_1249049_+	XRE family transcriptional regulator	NA	Q4ZB05	Staphylococcus_virus	98.7	3.5e-36
AVS00593.1|1249071_1249860_+	phage antirepressor	NA	R9QSV3	Staphylococcus_phage	99.6	2.7e-144
AVS00594.1|1249872_1250316_+	hypothetical protein	NA	Q6R853	Staphylococcus_virus	100.0	2.0e-75
AVS00595.1|1250330_1250471_+	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
AVS00596.1|1250463_1250673_-	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
AVS00597.1|1250729_1251479_+	oxidoreductase	NA	Q8SDM9	Staphylococcus_phage	99.6	4.4e-136
AVS00598.1|1251491_1251752_+	transcriptional regulator	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
AVS02181.1|1251984_1252305_+	DUF771 domain-containing protein	NA	A0A1W6JPI1	Staphylococcus_phage	100.0	7.4e-56
AVS00599.1|1252301_1252463_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
AVS00600.1|1252555_1252816_+	hypothetical protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
AVS00601.1|1252824_1253088_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
AVS02182.1|1253096_1255040_+	ATPase	NA	R9QT82	Staphylococcus_phage	99.2	0.0e+00
AVS00602.1|1255041_1255962_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
AVS00603.1|1256042_1256660_+	MBL fold metallo-hydrolase	NA	A0A1W6JPL3	Staphylococcus_phage	100.0	1.2e-86
AVS00604.1|1256660_1257131_+	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	99.4	4.8e-80
AVS00605.1|1257160_1258045_+	DNA replication protein DnaD	NA	S4V6D4	Staphylococcus_phage	96.3	1.6e-137
AVS00606.1|1258051_1258270_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
AVS00607.1|1258278_1258683_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
AVS00608.1|1258695_1259064_+	hypothetical protein	NA	A0A0E3XD52	Staphylococcus_phage	100.0	6.7e-53
AVS00609.1|1259067_1259310_+	hypothetical protein	NA	A0A1P8L6E3	Staphylococcus_phage	100.0	3.0e-41
AVS00610.1|1259324_1259579_+	hypothetical protein	NA	B5WZN0	Staphylococcus_phage	97.6	6.5e-39
AVS00611.1|1259541_1259736_+	hypothetical protein	NA	M1SVE4	Staphylococcus_phage	98.4	4.1e-25
AVS00612.1|1259728_1260265_+	dUTPase	NA	A0A2I6PEN6	Staphylococcus_phage	99.4	4.6e-95
AVS00613.1|1260301_1260508_+	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
AVS00614.1|1260504_1260708_+	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
AVS00615.1|1260700_1260937_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	98.7	1.1e-35
AVS00616.1|1260920_1261316_+	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	100.0	3.3e-66
AVS00617.1|1261312_1261462_+	transcriptional regulator	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AVS00618.1|1261620_1262271_+	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
AVS00619.1|1262270_1262471_+	DUF1514 domain-containing protein	NA	D2JLD9	Staphylococcus_phage	100.0	1.4e-28
AVS00620.1|1262498_1262915_+	transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
AVS00621.1|1263146_1263446_+	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
AVS00622.1|1263576_1263921_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
AVS00623.1|1263917_1265579_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
AVS00624.1|1265594_1266782_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
AVS00625.1|1266765_1267503_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
AVS00626.1|1267526_1268672_+|capsid	phage major capsid protein	capsid	C8CH21	Staphylococcus_phage	99.7	2.8e-214
AVS00627.1|1268691_1268976_+	hypothetical protein	NA	A0A1W6JPL8	Staphylococcus_phage	100.0	2.3e-45
AVS00628.1|1268965_1269250_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
AVS00629.1|1269233_1269596_+|head,tail	phage head-tail adapter protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
1269334:1269351	attR	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
AVS00630.1|1269592_1269997_+	hypothetical protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
AVS00631.1|1269993_1270401_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
AVS00632.1|1270401_1271046_+|tail	phage tail protein	tail	Q6R871	Staphylococcus_virus	100.0	6.5e-120
AVS00633.1|1271087_1271312_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
AVS00634.1|1271361_1271712_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	99.1	3.0e-58
AVS00635.1|1271956_1276489_+|tail	phage tail tape measure protein	tail	W5R8I2	Staphylococcus_phage	92.8	0.0e+00
AVS00636.1|1276485_1277970_+|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
AVS00637.1|1277985_1281771_+	hypothetical protein	NA	C8CH32	Staphylococcus_phage	99.7	0.0e+00
AVS00638.1|1281760_1281913_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
AVS00639.1|1281959_1282247_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
AVS00640.1|1282304_1282601_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
AVS00641.1|1282750_1282927_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
AVS00642.1|1282979_1283087_-	hypothetical protein	NA	NA	NA	NA	NA
AVS00643.1|1283138_1283393_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AVS00644.1|1283404_1284160_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AVS00645.1|1284350_1284842_+	kinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
AVS00646.1|1285452_1285803_+	inhibitor	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
AVS00647.1|1285855_1286116_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
AVS00648.1|1286094_1286403_-	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	100.0	2.1e-39
AVS00649.1|1286426_1286606_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
AVS00650.1|1286977_1287178_-	hypothetical protein	NA	A0A1P8L6A7	Staphylococcus_phage	95.4	3.8e-26
AVS00651.1|1287563_1289633_+	MAP domain-containing protein	NA	NA	NA	NA	NA
AVS00652.1|1289903_1291190_-	aspartate aminotransferase	NA	NA	NA	NA	NA
AVS00653.1|1291389_1291488_+	hypothetical protein	NA	NA	NA	NA	NA
AVS00654.1|1291729_1291906_+	hypothetical protein	NA	NA	NA	NA	NA
AVS00655.1|1292163_1292544_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AVS00656.1|1292540_1293437_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.7	6.5e-17
AVS00657.1|1293437_1294118_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
AVS00658.1|1294114_1294987_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
AVS00659.1|1294986_1295727_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
AVS00660.1|1295790_1296354_-	thioredoxin family protein	NA	NA	NA	NA	NA
AVS00661.1|1296474_1296999_+	hypothetical protein	NA	NA	NA	NA	NA
AVS00662.1|1297058_1297616_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
AVS00663.1|1297612_1298455_+	hypothetical protein	NA	NA	NA	NA	NA
AVS00664.1|1298511_1299552_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
AVS00665.1|1300002_1300176_+	hypothetical protein	NA	NA	NA	NA	NA
AVS00666.1|1300232_1300634_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
AVS00667.1|1300904_1301933_+	hypothetical protein	NA	NA	NA	NA	NA
AVS00668.1|1302052_1303432_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AVS00669.1|1303483_1303657_+	hypothetical protein	NA	NA	NA	NA	NA
AVS00670.1|1303849_1304779_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
AVS00671.1|1304831_1305392_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
AVS00672.1|1305763_1306861_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
AVS00673.1|1307065_1308628_+	sodium-dependent dicarboxylate transporter SdcS	NA	NA	NA	NA	NA
AVS00674.1|1308638_1308746_-	hypothetical protein	NA	NA	NA	NA	NA
AVS00675.1|1308817_1309612_-	prephenate dehydratase	NA	NA	NA	NA	NA
AVS00676.1|1309631_1310708_-	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
AVS00677.1|1310891_1312361_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.9	1.7e-107
AVS00678.1|1312353_1313175_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	53.1	6.1e-70
AVS00679.1|1313444_1314047_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
AVS00680.1|1314027_1314201_+	NETI motif-containing protein	NA	NA	NA	NA	NA
AVS00681.1|1314493_1314817_-	staphostatin A	NA	NA	NA	NA	NA
AVS00682.1|1314847_1316014_-|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
>prophage 3
CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	1419753	1467599	2882275	tRNA,protease,transposase	Staphylococcus_phage(91.89%)	48	NA	NA
AVS00772.1|1419753_1420035_+|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
AVS00773.1|1420483_1420867_+	hypothetical protein	NA	NA	NA	NA	NA
AVS00774.1|1420877_1421054_+	hypothetical protein	NA	NA	NA	NA	NA
AVS00775.1|1421424_1421982_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
AVS00776.1|1422179_1422752_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
AVS00777.1|1422849_1423194_-	DUF3969 domain-containing protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
AVS00778.1|1423234_1423861_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
AVS00779.1|1423936_1424932_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
AVS00780.1|1425012_1425675_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
AVS02188.1|1425977_1426433_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
AVS00781.1|1426591_1428070_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
AVS00782.1|1428074_1429076_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
AVS00783.1|1429072_1429330_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AVS00784.1|1429395_1429869_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
AVS02189.1|1429873_1430620_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
AVS00785.1|1430916_1432509_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
AVS00786.1|1432880_1434074_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AVS00787.1|1434198_1435107_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
AVS00788.1|1435318_1436152_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
AVS00789.1|1436401_1436755_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
AVS00790.1|1436751_1437117_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
AVS00791.1|1437371_1437674_-	hypothetical protein	NA	NA	NA	NA	NA
AVS00792.1|1437932_1438646_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AVS00793.1|1439208_1439829_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVS00794.1|1439995_1440631_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVS00795.1|1440928_1441372_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.4e-49
AVS00796.1|1441358_1441802_-	competence protein ComK	NA	NA	NA	NA	NA
AVS00797.1|1441914_1442385_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
AVS00798.1|1442583_1442808_+	hypothetical protein	NA	NA	NA	NA	NA
AVS00799.1|1443083_1443938_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AVS00800.1|1444024_1445317_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
AVS00801.1|1445316_1445631_-	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
AVS00802.1|1446273_1447776_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
AVS02190.1|1448268_1449300_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	1.5e-195
AVS00803.1|1449306_1449939_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
AVS00804.1|1449949_1451131_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
AVS00805.1|1451143_1451602_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
AVS00806.1|1451729_1452731_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
AVS02191.1|1452639_1452831_+	hypothetical protein	NA	NA	NA	NA	NA
AVS00807.1|1452842_1452962_+	hypothetical protein	NA	NA	NA	NA	NA
AVS00808.1|1452964_1453792_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AVS00809.1|1454364_1454766_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVS00810.1|1454884_1455448_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
AVS00811.1|1455444_1456398_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
AVS00812.1|1456507_1457689_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
AVS00813.1|1457976_1460394_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
AVS00814.1|1460415_1460727_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	95.1	1.3e-49
AVS00815.1|1461050_1467599_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	95.1	5.7e-296
>prophage 4
CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	1603845	1612888	2882275	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AVS00934.1|1603845_1604850_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
AVS00935.1|1604851_1605877_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AVS00936.1|1605899_1607039_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AVS00937.1|1607057_1607318_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AVS00938.1|1607592_1609872_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AVS00939.1|1610074_1612348_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
AVS00940.1|1612369_1612888_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 5
CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	1682254	1690566	2882275	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
AVS01009.1|1682254_1684054_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
AVS01010.1|1684277_1685384_+	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AVS01011.1|1685514_1686192_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AVS01012.1|1686194_1687295_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
AVS01013.1|1687408_1688755_+	ATP-dependent helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	3.4e-54
AVS01014.1|1688764_1689655_+	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
AVS01015.1|1689780_1690566_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 6
CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	1962742	1969502	2882275	head	Staphylococcus_phage(83.33%)	9	NA	NA
AVS01253.1|1962742_1963582_-|head	head morphogenesis protein	head	A0A1J0MFV1	Staphylococcus_phage	50.7	1.1e-29
AVS01254.1|1963651_1963903_-	hypothetical protein	NA	NA	NA	NA	NA
AVS02208.1|1964551_1965136_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	42.6	4.4e-30
AVS01255.1|1965567_1965984_-	hypothetical protein	NA	NA	NA	NA	NA
AVS01256.1|1966494_1966680_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
AVS01257.1|1967072_1967183_-	hypothetical protein	NA	NA	NA	NA	NA
AVS01258.1|1967883_1968090_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	55.2	5.5e-12
AVS02209.1|1968390_1968618_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
AVS01259.1|1969304_1969502_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
>prophage 7
CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	2235461	2243934	2882275		Synechococcus_phage(33.33%)	9	NA	NA
AVS01509.1|2235461_2236028_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
AVS01510.1|2236030_2237059_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
AVS01511.1|2237051_2238536_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
AVS01512.1|2238514_2240704_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	1.3e-140
AVS01513.1|2240696_2241368_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AVS01514.1|2241369_2241633_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AVS01515.1|2241632_2242337_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
AVS01516.1|2242340_2243465_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AVS01517.1|2243451_2243934_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 8
CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	2262607	2279893	2882275	bacteriocin,protease,holin	Staphylococcus_phage(50.0%)	22	NA	NA
AVS01534.1|2262607_2263636_+|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	31.7	1.1e-15
AVS01535.1|2263717_2264899_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
AVS01536.1|2264936_2265266_+	staphostatin B	NA	NA	NA	NA	NA
AVS01537.1|2265503_2266325_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
AVS01538.1|2266317_2267121_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
AVS01539.1|2267107_2268781_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
AVS02221.1|2268767_2269979_-	isochorismate synthase	NA	NA	NA	NA	NA
AVS02222.1|2270082_2270160_-	hypothetical protein	NA	NA	NA	NA	NA
AVS01540.1|2270310_2271249_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
AVS01541.1|2271299_2271851_-	N-acetyltransferase	NA	NA	NA	NA	NA
AVS01542.1|2271940_2272231_+	NINE protein	NA	NA	NA	NA	NA
AVS01543.1|2272294_2272426_+	hypothetical protein	NA	NA	NA	NA	NA
AVS01544.1|2272474_2273434_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVS01545.1|2273924_2274281_+	DoxX family protein	NA	NA	NA	NA	NA
AVS01546.1|2274369_2274507_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
AVS01547.1|2274647_2274938_+	hypothetical protein	NA	NA	NA	NA	NA
AVS01548.1|2275025_2275667_-|bacteriocin	bacteriocin ABC transporter ATP-binding protein	bacteriocin	G9BWD6	Planktothrix_phage	33.7	1.0e-19
AVS01549.1|2275663_2275984_-	hypothetical protein	NA	NA	NA	NA	NA
AVS01550.1|2275986_2277951_-	DUF1430 domain-containing protein	NA	NA	NA	NA	NA
AVS01551.1|2277994_2278279_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
AVS02223.1|2278913_2278991_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AVS01552.1|2279290_2279893_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 9
CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	2342654	2365879	2882275	integrase	Streptococcus_phage(94.74%)	25	2338363:2338380	2377406:2377423
2338363:2338380	attL	GCGGGGCCCCAACACAGA	NA	NA	NA	NA
AVS01607.1|2342654_2342969_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
AVS01608.1|2342984_2343371_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
AVS01609.1|2343399_2344785_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
AVS01610.1|2344787_2344940_+	conjugal transfer protein	NA	NA	NA	NA	NA
AVS01611.1|2344962_2346168_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
AVS01612.1|2346210_2346432_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
AVS01613.1|2346548_2347046_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
AVS01614.1|2347020_2347527_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
AVS01615.1|2347510_2349958_+	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	99.9	0.0e+00
AVS01616.1|2349960_2352138_+	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
AVS01617.1|2352134_2353136_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
AVS01618.1|2353132_2354065_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
AVS01619.1|2354339_2354426_+	tetracycline resistance protein	NA	NA	NA	NA	NA
AVS01620.1|2354441_2356361_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
AVS01621.1|2356461_2356647_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	67.9	3.9e-17
AVS01622.1|2356706_2357060_-	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
AVS02225.1|2357264_2357336_+	hypothetical protein	NA	NA	NA	NA	NA
AVS01623.1|2357564_2357987_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
AVS01624.1|2357983_2358214_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
AVS01625.1|2358439_2358691_-	hypothetical protein	NA	NA	NA	NA	NA
AVS01626.1|2358674_2358878_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
AVS01627.1|2358959_2360177_+|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	99.8	1.1e-232
AVS01628.1|2360441_2360831_-	hypothetical protein	NA	NA	NA	NA	NA
AVS01629.1|2361157_2362060_-	FAA hydrolase family protein	NA	NA	NA	NA	NA
AVS01630.1|2362225_2365879_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.7	7.0e-25
2377406:2377423	attR	TCTGTGTTGGGGCCCCGC	NA	NA	NA	NA
>prophage 10
CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	2415075	2461213	2882275	head,capsid,integrase,portal,terminase,tail,holin	Staphylococcus_phage(70.59%)	70	2408350:2408365	2466347:2466362
2408350:2408365	attL	CTTTTGGTAATTCTTT	NA	NA	NA	NA
AVS01679.1|2415075_2415459_-	hypothetical protein	NA	A0A0H4J3A8	Staphylococcus_phage	100.0	4.7e-65
AVS01680.1|2415445_2415757_-	DUF3467 domain-containing protein	NA	Q4ZB87	Staphylococcus_virus	100.0	1.8e-51
AVS01681.1|2416102_2416303_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
AVS01682.1|2416289_2416400_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
AVS01683.1|2416470_2416623_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
AVS01684.1|2416865_2418311_-	CHAP domain-containing protein	NA	Q08JW9	Staphylococcus_phage	98.8	1.7e-293
AVS01685.1|2418291_2418729_-|holin	phage holin	holin	A0A2H4PQP0	Staphylococcus_phage	100.0	4.1e-73
AVS01686.1|2418785_2419181_-	hypothetical protein	NA	A9CRD5	Staphylococcus_phage	98.5	2.3e-67
AVS01687.1|2419185_2420424_-	DUF2479 domain-containing protein	NA	A0A0F6N3G7	Staphylococcus_phage	99.3	3.8e-209
AVS01688.1|2420436_2422311_-	CHAP domain-containing protein	NA	Q9FZY4	Staphylococcus_virus	98.4	0.0e+00
AVS01689.1|2422447_2422747_-	hypothetical protein	NA	A0A0F6N3M6	Staphylococcus_phage	100.0	9.9e-47
AVS02227.1|2422787_2422961_-	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
AVS01690.1|2422963_2423341_-	DUF2977 domain-containing protein	NA	E0Y3M4	Staphylococcus_virus	100.0	2.6e-60
AVS01691.1|2423340_2425164_-	DUF2479 domain-containing protein	NA	Q4ZBH7	Staphylococcus_virus	100.0	0.0e+00
AVS01692.1|2425163_2427062_-	hypothetical protein	NA	Q4ZBH8	Staphylococcus_virus	99.8	0.0e+00
AVS01693.1|2427074_2428961_-	peptidase	NA	A7YGW3	Staphylococcus_virus	100.0	0.0e+00
AVS01694.1|2428971_2429907_-|tail	phage tail protein	tail	Q4ZBI0	Staphylococcus_virus	100.0	8.2e-180
AVS01695.1|2429921_2432891_-|terminase	terminase	terminase	Q4ZBI1	Staphylococcus_virus	99.8	1.0e-263
AVS01696.1|2432893_2433235_-	hypothetical protein	NA	A0A2H4PQL5	Staphylococcus_phage	76.1	9.3e-41
AVS01697.1|2433255_2433750_-	hypothetical protein	NA	A0A0H4IPX9	Staphylococcus_phage	100.0	2.5e-87
AVS01698.1|2433811_2434372_-|tail	phage tail protein	tail	A0A0H4ITY2	Staphylococcus_phage	100.0	5.9e-101
AVS01699.1|2434358_2434796_-	DUF3168 domain-containing protein	NA	Q4ZBI5	Staphylococcus_virus	100.0	2.1e-77
AVS01700.1|2434808_2435222_-	hypothetical protein	NA	A0A0E3XCY8	Staphylococcus_phage	100.0	1.5e-77
AVS01701.1|2435208_2435544_-|head,tail	phage head-tail adapter protein	head,tail	A0A0H4ISR6	Staphylococcus_phage	98.2	8.8e-60
AVS01702.1|2435536_2435851_-|head,tail	phage head-tail adapter protein	head,tail	A0A0E3T8M5	Staphylococcus_phage	100.0	8.8e-54
AVS01703.1|2435850_2436177_-	Rho termination protein	NA	A0A0E3TAL3	Staphylococcus_phage	100.0	4.3e-51
AVS01704.1|2436193_2437018_-|capsid	N4-gp56 family major capsid protein	capsid	A0A0E3T9M6	Staphylococcus_phage	100.0	5.6e-148
AVS01705.1|2437038_2437635_-	hypothetical protein	NA	C7F7L8	Staphylococcus_phage	98.0	3.1e-76
AVS01706.1|2437732_2438713_-|head	phage head morphogenesis protein	head	A0A0E3XC69	Staphylococcus_phage	99.7	3.5e-181
AVS01707.1|2438651_2440130_-|portal	phage portal protein	portal	A0A0E3T8M2	Staphylococcus_phage	99.6	5.1e-285
AVS01708.1|2440083_2441292_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0H4ITX6	Staphylococcus_phage	99.5	4.0e-235
AVS01709.1|2441284_2441779_-|terminase	terminase	terminase	A0A0H4J343	Staphylococcus_phage	99.4	3.2e-82
AVS01710.1|2442130_2442532_-	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
AVS01711.1|2442532_2442706_-	transcriptional regulator	NA	Q4ZA36	Staphylococcus_virus	94.7	5.4e-21
AVS01712.1|2442702_2443098_-	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	100.0	3.3e-66
AVS01713.1|2443081_2443318_-	hypothetical protein	NA	Q4ZDP0	Staphylococcus_virus	100.0	2.8e-36
AVS01714.1|2443310_2443514_-	hypothetical protein	NA	B2ZYX5	Staphylococcus_phage	98.5	8.8e-31
AVS01715.1|2443510_2443717_-	DUF1381 domain-containing protein	NA	S4V684	Staphylococcus_phage	97.1	1.1e-28
AVS01716.1|2443713_2443959_-	hypothetical protein	NA	A0A0H4ITX2	Staphylococcus_phage	100.0	2.0e-37
AVS01717.1|2443995_2444532_-	dUTPase	NA	A0A0K1LKF0	Staphylococcus_phage	97.8	5.7e-93
AVS01718.1|2444524_2444773_-	DUF1024 domain-containing protein	NA	Q4ZCN8	Staphylococcus_virus	100.0	2.4e-38
AVS01719.1|2444765_2445041_-	hypothetical protein	NA	Q4ZBD3	Staphylococcus_virus	94.5	3.0e-42
AVS01720.1|2445040_2445442_-	hypothetical protein	NA	A0A0H4IPW3	Staphylococcus_phage	79.1	4.3e-53
AVS01721.1|2445456_2445705_-	hypothetical protein	NA	S4V683	Staphylococcus_phage	97.6	3.6e-42
AVS01722.1|2445705_2446323_-	hypothetical protein	NA	A0A0H3U4U9	Staphylococcus_phage	96.1	7.5e-81
AVS01723.1|2446323_2446509_-	DUF3113 domain-containing protein	NA	A0A0H3U473	Staphylococcus_phage	96.7	3.5e-26
AVS01724.1|2446508_2446916_-	RusA family crossover junction endodeoxyribonuclease	NA	A9CR74	Staphylococcus_phage	98.5	2.5e-72
AVS01725.1|2446925_2447147_-	hypothetical protein	NA	A0A0H3U2V4	Staphylococcus_phage	98.6	1.9e-34
AVS01726.1|2447160_2447319_-	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	96.2	1.3e-21
AVS01727.1|2447312_2448086_-	DNA replication protein DnaC	NA	A0A2I6PDA0	Staphylococcus_phage	98.8	1.5e-142
AVS01728.1|2448095_2448911_-	replication protein	NA	Q4ZAS2	Staphylococcus_virus	99.3	1.3e-117
AVS01729.1|2448882_2449662_-	AP2 domain-containing protein	NA	A0A2H4J5K3	uncultured_Caudovirales_phage	46.1	7.3e-49
AVS01730.1|2449661_2450327_-	hypothetical protein	NA	Q8SDW3	Staphylococcus_phage	99.5	1.4e-125
AVS02228.1|2450339_2450840_-	single-strand DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	7.2e-90
AVS01731.1|2450924_2451698_-	hypothetical protein	NA	A0EWP9	Staphylococcus_virus	100.0	1.6e-141
AVS01732.1|2451697_2452177_-	siphovirus superfamily	NA	A0A0H4J328	Staphylococcus_phage	100.0	1.1e-82
AVS01733.1|2452191_2452452_-	DUF1108 domain-containing protein	NA	A1KX65	Staphylococcus_virus	100.0	8.9e-44
AVS01734.1|2452544_2452706_-	DUF1270 domain-containing protein	NA	C7F7L3	Staphylococcus_phage	100.0	1.9e-20
AVS01735.1|2452698_2452920_-	hypothetical protein	NA	A0A0H4ISQ0	Staphylococcus_phage	100.0	1.5e-31
AVS01736.1|2453117_2453321_-	hypothetical protein	NA	A0A0E3XBM9	Staphylococcus_phage	100.0	4.7e-32
AVS01737.1|2453336_2454089_-	oxidoreductase	NA	Q4ZBN2	Staphylococcus_phage	100.0	1.3e-138
AVS01738.1|2454153_2454390_+	hypothetical protein	NA	Q4ZBN3	Staphylococcus_phage	97.4	8.7e-38
AVS01739.1|2454603_2454831_-	BetR domain protein	NA	B5WZL3	Staphylococcus_phage	93.3	2.6e-31
AVS01740.1|2455001_2455613_+	helix-turn-helix domain-containing protein	NA	B5WZL2	Staphylococcus_phage	90.1	3.8e-101
AVS01741.1|2455648_2456581_+	hypothetical protein	NA	A0EX19	Staphylococcus_virus	100.0	6.7e-174
AVS01742.1|2456560_2456740_-	excisionase	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
AVS01743.1|2456852_2457902_+|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.4	1.1e-201
AVS01744.1|2457969_2459367_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
AVS01745.1|2459517_2459982_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
AVS01746.1|2459971_2461213_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	6.3e-111
2466347:2466362	attR	CTTTTGGTAATTCTTT	NA	NA	NA	NA
>prophage 11
CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	2548696	2563012	2882275		uncultured_Caudovirales_phage(50.0%)	17	NA	NA
AVS01835.1|2548696_2549458_-	iron ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
AVS01836.1|2549454_2550411_-	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
AVS01837.1|2550397_2551369_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
AVS01838.1|2551514_2551697_-	hypothetical protein	NA	NA	NA	NA	NA
AVS01839.1|2551738_2552710_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AVS01840.1|2552829_2554935_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AVS01841.1|2554897_2555296_-	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AVS01842.1|2555563_2555713_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
AVS01843.1|2556097_2556964_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AVS01844.1|2556983_2557484_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
AVS01845.1|2557555_2557762_+	hypothetical protein	NA	NA	NA	NA	NA
AVS01846.1|2557823_2559329_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AVS01847.1|2559400_2559508_-	hypothetical protein	NA	NA	NA	NA	NA
AVS01848.1|2559598_2560516_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.8e-07
AVS02231.1|2560784_2560952_-	nitrogen fixation protein NifR	NA	NA	NA	NA	NA
AVS01849.1|2561252_2561795_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AVS01850.1|2561953_2563012_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
>prophage 12
CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	2574982	2582802	2882275		Pandoravirus(16.67%)	10	NA	NA
AVS01860.1|2574982_2576134_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
AVS01861.1|2576117_2576711_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
AVS01862.1|2577061_2577730_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AVS01863.1|2577731_2578151_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AVS01864.1|2578154_2578868_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AVS01865.1|2578966_2579551_+	hypothetical protein	NA	NA	NA	NA	NA
AVS01866.1|2579831_2580272_+	hypothetical protein	NA	NA	NA	NA	NA
AVS01867.1|2580612_2581086_+	DoxX family membrane protein	NA	NA	NA	NA	NA
AVS01868.1|2581060_2581747_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AVS01869.1|2581746_2582802_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
