The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP024842	Pectobacterium carotovorum strain 3-2 chromosome, complete genome	4975878	495498	509045	4975878	transposase,capsid	Enterobacteria_phage(33.33%)	16	NA	NA
AVT57122.1|495498_496758_+	IntB	NA	B7SYF8	Stenotrophomonas_phage	40.6	2.6e-72
AVT57123.1|496815_499569_-	ATPase involved in DNA repair	NA	A0A1B1IUG5	uncultured_Mediterranean_phage	25.6	4.5e-24
AVT57124.1|500071_500320_-	bacteriophage regulatory protein	NA	A0A2I8TV89	Erwinia_phage	59.0	1.6e-13
AVT57125.1|500316_501075_-|capsid	capsid size determination protein	capsid	Q7M2A2	Enterobacteria_phage	33.8	7.2e-25
AVT57126.1|501624_501885_+	phage transcriptional regulator, AlpA	NA	Q7M299	Enterobacteria_phage	51.9	1.9e-14
AVT57127.1|501881_502106_+	Hypothetical protein	NA	NA	NA	NA	NA
AVT57128.1|502467_502665_+	Phage immunity repressor protein	NA	A0A1W6JPK3	Morganella_phage	64.0	1.9e-09
AVT57129.1|502657_502852_+	hypothetical protein	NA	NA	NA	NA	NA
AVT57130.1|502848_503115_+	hypothetical protein	NA	NA	NA	NA	NA
AVT57131.1|503111_503453_+	hypothetical protein	NA	NA	NA	NA	NA
AVT57132.1|503463_505791_+	phage/plasmid primase, P4 family	NA	Q7M2A8	Enterobacteria_phage	60.5	6.2e-269
AVT57133.1|505844_506324_-	Hypothetical protein	NA	NA	NA	NA	NA
AVT57134.1|506314_506587_-	Hypothetical protein	NA	NA	NA	NA	NA
AVT57135.1|506877_507129_+	hypothetical protein	NA	NA	NA	NA	NA
AVT57136.1|507118_507403_+	addiction module toxin, RelE/StbE family	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	62.8	7.0e-26
AVT57137.1|507839_509045_-|transposase	transposase ISPcc2, ISL3 family	transposase	A9YX10	Burkholderia_phage	53.7	2.4e-107
>prophage 2
CP024842	Pectobacterium carotovorum strain 3-2 chromosome, complete genome	4975878	890621	898988	4975878	capsid,integrase	Enterobacteria_phage(50.0%)	9	883916:883929	906280:906293
883916:883929	attL	CGATAAACGACGGC	NA	NA	NA	NA
AVT57463.1|890621_892949_-	phage/plasmid primase, P4 family	NA	Q7M2A8	Enterobacteria_phage	60.5	1.1e-268
AVT57464.1|892959_893172_-	hypothetical protein	NA	NA	NA	NA	NA
AVT57465.1|893164_893362_-	Phage immunity repressor protein	NA	A0A1W6JPK3	Morganella_phage	63.0	9.9e-11
AVT57466.1|893714_893939_-	Hypothetical protein	NA	NA	NA	NA	NA
AVT57467.1|893935_894196_-	phage transcriptional regulator, AlpA	NA	Q7M299	Enterobacteria_phage	54.5	3.9e-15
AVT57468.1|894744_895503_+|capsid	capsid size determination protein	capsid	Q7M2A2	Enterobacteria_phage	32.5	7.9e-24
AVT57469.1|895499_895748_+	bacteriophage regulatory protein	NA	A0A2I8TV89	Erwinia_phage	60.3	1.2e-13
AVT57470.1|896363_897338_+	hypothetical protein	NA	NA	NA	NA	NA
AVT57471.1|897800_898988_-|integrase	Prophage CP4-57 integrase	integrase	A0A1B5FPC6	Escherichia_phage	48.1	5.6e-101
906280:906293	attR	GCCGTCGTTTATCG	NA	NA	NA	NA
>prophage 3
CP024842	Pectobacterium carotovorum strain 3-2 chromosome, complete genome	4975878	1490690	1523199	4975878	holin,tail,tRNA,integrase	Cronobacter_phage(47.06%)	31	1505534:1505550	1517579:1517595
AVT57974.1|1490690_1493273_-|tRNA	leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	43.4	7.8e-188
AVT57975.1|1493582_1494065_+	Uncharacterized protein YbeL	NA	NA	NA	NA	NA
AVT57976.1|1494291_1495017_-	glutamate/aspartate transport ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	8.4e-31
AVT57977.1|1495016_1495691_-	glutamate/aspartate transport system permease	NA	NA	NA	NA	NA
AVT57978.1|1495694_1496435_-	glutamate/aspartate transport system permease	NA	NA	NA	NA	NA
AVT57979.1|1496654_1497551_-	glutamate and aspartate transporter subunit	NA	NA	NA	NA	NA
AVT57980.1|1498002_1499532_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AVT57981.1|1499539_1500418_-	magnesium and cobalt efflux protein corc	NA	NA	NA	NA	NA
AVT57982.1|1500668_1501148_-	ssRNA-specific endoribonuclease	NA	NA	NA	NA	NA
AVT57983.1|1501144_1502203_-	Heat shock protein YbeZ	NA	A0A0S0MVD6	Pseudomonas_phage	45.6	4.2e-47
AVT57984.1|1502543_1503968_-|tRNA	tRNA-i(6)A37 methylthiotransferase	tRNA	NA	NA	NA	NA
AVT57985.1|1504195_1505362_+	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	NA	NA	NA	NA	NA
AVT57986.1|1505384_1505999_-	hypothetical protein	NA	NA	NA	NA	NA
1505534:1505550	attL	CCAGATTGTTTTCGCCC	NA	NA	NA	NA
AVT57987.1|1506293_1507298_-|integrase	bacteriophage integrase	integrase	A0A218M4I3	Erwinia_phage	61.1	5.6e-118
AVT57988.1|1507415_1508342_-	hypothetical protein	NA	NA	NA	NA	NA
AVT57989.1|1508344_1508764_-	hypothetical protein	NA	NA	NA	NA	NA
AVT57990.1|1509204_1509837_-	Repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	41.0	2.4e-34
AVT57991.1|1509895_1510141_+	hypothetical protein	NA	NA	NA	NA	NA
AVT57992.1|1510184_1511135_+|tail	phage tail protein	tail	F1BUL5	Cronobacter_phage	62.4	6.5e-100
AVT57993.1|1511137_1511593_+|tail	tail protein	tail	A5X9I1	Aeromonas_virus	57.6	6.0e-43
AVT57994.1|1511596_1511884_+|holin	holin	holin	C7BGD7	Burkholderia_phage	50.6	8.7e-16
AVT57995.1|1511880_1512222_+	hypothetical protein	NA	F1BUL3	Cronobacter_phage	76.2	4.6e-40
AVT57996.1|1512417_1512714_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	54.8	2.4e-16
AVT57997.1|1512710_1512992_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	42.4	4.8e-11
AVT57998.1|1513179_1515360_+|tail	tail protein	tail	F1BUK9	Cronobacter_phage	35.6	4.8e-106
AVT57999.1|1515356_1515686_+	hypothetical protein	NA	F1BUK8	Cronobacter_phage	58.7	3.0e-28
AVT58000.1|1515682_1516867_+	bacteriophage protein	NA	F1BUK6	Cronobacter_phage	60.3	2.9e-137
AVT58001.1|1516859_1517492_+|tail	Phage tail protein	tail	F1BUK5	Cronobacter_phage	51.1	1.5e-47
AVT58002.1|1517498_1519682_+|tail	tail fiber protein	tail	F1BUJ7	Cronobacter_phage	47.4	2.2e-74
1517579:1517595	attR	CCAGATTGTTTTCGCCC	NA	NA	NA	NA
AVT58003.1|1520285_1520447_-	Uncharacterized protein	NA	NA	NA	NA	NA
AVT58004.1|1521534_1523199_-	asparagine synthetase B	NA	H8ZJK1	Ostreococcus_tauri_virus	39.1	1.4e-84
>prophage 4
CP024842	Pectobacterium carotovorum strain 3-2 chromosome, complete genome	4975878	2121259	2134311	4975878	tail	Aeromonas_phage(42.86%)	11	NA	NA
AVT58536.1|2121259_2121940_-	Phage repressor CI-like protein	NA	K7P7I4	Enterobacteria_phage	73.8	2.3e-67
AVT58537.1|2122031_2122259_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AVT58538.1|2122419_2123499_+|tail	putative tail tip fiber protein	tail	A0A2L1IV54	Escherichia_phage	43.6	9.9e-28
AVT58539.1|2123520_2123892_+	hypothetical protein	NA	A0A088CC37	Shigella_phage	55.7	4.4e-28
AVT58540.1|2123900_2124578_+	hypothetical protein	NA	A0A1I9KFE8	Aeromonas_phage	53.8	8.6e-46
AVT58541.1|2124591_2124972_+	hypothetical protein	NA	A0A1I9KFD7	Aeromonas_phage	37.4	3.4e-15
AVT58542.1|2124971_2125247_+	hypothetical protein	NA	NA	NA	NA	NA
AVT58543.1|2125259_2126597_+	hypothetical protein	NA	A0A088CBK4	Shigella_phage	31.6	2.0e-22
AVT58544.1|2126668_2127154_+	hypothetical protein	NA	NA	NA	NA	NA
AVT58545.1|2127177_2127378_+	hypothetical protein	NA	NA	NA	NA	NA
AVT58546.1|2127534_2134311_+	hypothetical protein	NA	A0A1I9KFG8	Aeromonas_phage	37.8	2.1e-245
>prophage 5
CP024842	Pectobacterium carotovorum strain 3-2 chromosome, complete genome	4975878	2310940	2316202	4975878		uncultured_Caudovirales_phage(50.0%)	7	NA	NA
AVT58683.1|2310940_2311798_+	Urea ABC transporter, ATPase protein UrtD	NA	A0A2R8FG22	Brazilian_cedratvirus	26.0	3.5e-12
AVT58684.1|2311799_2312498_+	Urea ABC transporter, ATPase protein UrtE	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	1.7e-12
AVT58685.1|2312626_2313076_+	hypothetical protein	NA	NA	NA	NA	NA
AVT58686.1|2313199_2313520_+	DNA-binding transcriptional repressor ArsR	NA	A0A2H4J145	uncultured_Caudovirales_phage	47.5	2.2e-20
AVT58687.1|2313566_2314859_+	arsenical pump membrane protein	NA	A0A2H4J144	uncultured_Caudovirales_phage	72.8	4.8e-170
AVT58688.1|2314868_2315294_+	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	70.7	1.0e-49
AVT58689.1|2315377_2316202_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.7	3.1e-21
>prophage 6
CP024842	Pectobacterium carotovorum strain 3-2 chromosome, complete genome	4975878	2886086	2952212	4975878	terminase,tail,protease,tRNA,holin,plate,transposase	Burkholderia_phage(18.75%)	74	NA	NA
AVT59191.1|2886086_2887094_-	nucleoid-associated protein	NA	A0A1V0E8C0	Vibrio_phage	48.0	5.7e-86
AVT59192.1|2887314_2887545_+	Uncharacterized protein	NA	NA	NA	NA	NA
AVT59193.1|2887559_2889308_+	Essential inner membrane DUF3413 domain protein	NA	NA	NA	NA	NA
AVT59194.1|2889578_2889800_+	Hypothetical protein	NA	H9C151	Pectobacterium_phage	91.8	8.7e-32
AVT59195.1|2889800_2890532_-	Hypothetical protein	NA	A0A2D2W7C0	Pectobacterium_phage	47.6	3.3e-43
AVT59196.1|2890786_2891932_-|terminase	Phage terminase, large subunit	terminase	A0A1P8DTK0	Proteus_phage	80.2	2.1e-177
AVT59197.1|2891935_2892409_-|terminase	Phage terminase, small subunit	terminase	A0A1P8DTK5	Proteus_phage	62.4	5.1e-53
AVT59198.1|2892556_2892907_-	HNH endonuclease	NA	A0A1B5FP94	Escherichia_phage	74.6	6.8e-47
AVT59199.1|2892981_2893296_-	hypothetical protein	NA	A0A2P0VMU9	Tetraselmis_virus	38.8	2.6e-05
AVT59200.1|2893494_2893752_-	hypothetical protein	NA	NA	NA	NA	NA
AVT59201.1|2893778_2894162_-|holin	Phage holin family (Lysis protein S)	holin	Q9MCT3	Escherichia_phage	39.8	1.2e-09
AVT59202.1|2894273_2895137_-	Putative DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
AVT59203.1|2895428_2896589_+	nucleoid-associated protein	NA	A0A291AUQ0	Sinorhizobium_phage	23.9	8.2e-12
AVT59204.1|2896585_2897809_+	hypothetical protein	NA	NA	NA	NA	NA
AVT59205.1|2897815_2898160_-	phage antitermination protein Q	NA	A0A0P0ZCW0	Stx2-converting_phage	77.9	1.7e-50
AVT59206.1|2898436_2899942_+|transposase	transposase ISPcc4, IS1182 family	transposase	NA	NA	NA	NA
AVT59207.1|2900238_2900856_+	Threonine efflux protein	NA	NA	NA	NA	NA
AVT59208.1|2901162_2901402_+	Qin prophage, bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/ transcriptional repressor	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	57.0	3.1e-19
AVT59209.1|2901401_2901689_+	addiction module toxin, RelE/StbE family	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	67.4	3.6e-30
AVT59210.1|2901706_2902066_+	hypothetical protein	NA	NA	NA	NA	NA
AVT59211.1|2902264_2902624_-	Hepatocellular carcinoma-associated protein p28-II	NA	NA	NA	NA	NA
AVT59212.1|2903008_2903473_-	transcription activator effector binding protein	NA	NA	NA	NA	NA
AVT59213.1|2903620_2904343_-	putative esterase	NA	NA	NA	NA	NA
AVT59214.1|2904586_2904916_-	hypothetical protein	NA	NA	NA	NA	NA
AVT59215.1|2904982_2905519_-	Rhodanese domain protein	NA	NA	NA	NA	NA
AVT59216.1|2905924_2907325_+	MATE efflux family protein	NA	NA	NA	NA	NA
AVT59217.1|2907368_2908538_-	transport protein	NA	NA	NA	NA	NA
AVT59218.1|2908824_2909340_-	outer membrane protein X	NA	H6WZM8	Escherichia_phage	33.0	9.2e-16
AVT59219.1|2909716_2910604_+	Threonine/homoserine exporter	NA	NA	NA	NA	NA
AVT59220.1|2910591_2911143_-	adenylate kinase	NA	A0A097BYE2	Leuconostoc_phage	35.1	3.2e-14
AVT59221.1|2911484_2911988_+	DNA starvation/stationary phase protection protein, Fe-binding and storage protein	NA	A0A222YYG6	Streptomyces_phage	29.9	1.8e-08
AVT59222.1|2912378_2913125_+	glutamine ABC transporter periplasmic protein	NA	NA	NA	NA	NA
AVT59223.1|2913151_2913811_+	glutamine ABC transporter permease	NA	NA	NA	NA	NA
AVT59224.1|2913807_2914530_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.8	4.3e-35
AVT59225.1|2914581_2916450_-	peptidase	NA	NA	NA	NA	NA
AVT59226.1|2916535_2917504_-	Putative family 3 glycosyltransferase	NA	NA	NA	NA	NA
AVT59227.1|2917613_2918189_-	DNA-invertase	NA	A0A286S1P7	Klebsiella_phage	79.0	2.8e-74
AVT59228.1|2918436_2918934_+	hypothetical protein	NA	NA	NA	NA	NA
AVT59229.1|2918985_2920998_-	Tail Collar domain protein	NA	Q6K1H2	Salmonella_virus	61.7	1.0e-46
AVT59230.1|2921000_2921582_-|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	63.3	1.9e-62
AVT59231.1|2921574_2922678_-|plate	Baseplate J family protein	plate	A4JWL6	Burkholderia_virus	53.8	3.3e-103
AVT59232.1|2922668_2922941_-	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	60.5	5.2e-26
AVT59233.1|2923074_2923656_-|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	45.6	2.7e-24
AVT59234.1|2923652_2924813_-	late control D family protein	NA	Q6QIA2	Burkholderia_phage	50.0	2.9e-86
AVT59235.1|2924800_2925013_-|tail	tail X family protein	tail	A4JWL2	Burkholderia_virus	57.1	2.0e-17
AVT59236.1|2925002_2925932_-	P2 GpU family protein	NA	Q6QIA4	Burkholderia_phage	42.9	2.4e-46
AVT59237.1|2925931_2926423_-|tail	phage tail tape measure protein, TP901 family	tail	NA	NA	NA	NA
AVT59238.1|2926541_2926676_-	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	57.4	2.0e-07
AVT59239.1|2926672_2927140_-	Gp37-like phage protein	NA	NA	NA	NA	NA
AVT59240.1|2927402_2927714_-	hypothetical protein	NA	Q6QIC3	Burkholderia_phage	45.5	3.7e-20
AVT59241.1|2927706_2928036_-	hypothetical protein	NA	Q5ZQY8	Pseudomonas_phage	45.8	1.5e-19
AVT59242.1|2928025_2928700_-	Phage lipoprotein	NA	NA	NA	NA	NA
AVT59243.1|2928689_2929301_-	Lytic transglycosylase catalytic	NA	Q5ZQZ1	Pseudomonas_phage	56.5	1.0e-58
AVT59244.1|2929302_2929632_-	hypothetical protein	NA	A4JWP3	Burkholderia_virus	58.3	1.2e-24
AVT59245.1|2929851_2931219_-	type I secretion outer membrane protein, TolC family	NA	NA	NA	NA	NA
AVT59246.1|2931221_2932550_-|protease	protease secretion protein	protease	NA	NA	NA	NA
AVT59247.1|2932577_2934305_-|protease	protease secretion ATP-binding protein	protease	W8CYL7	Bacillus_phage	33.2	5.6e-25
AVT59248.1|2934322_2934634_-|protease	protease inhibitor	protease	NA	NA	NA	NA
AVT59249.1|2934739_2936170_-|protease	secreted metalloprotease	protease	NA	NA	NA	NA
AVT59250.1|2936690_2938790_-	ATP-dependent DNA helicase DinG	NA	A0A127AW80	Bacillus_phage	25.7	4.3e-43
AVT59251.1|2938939_2939785_+	AraC-family transcriptional regulator	NA	NA	NA	NA	NA
AVT59252.1|2939837_2940485_+	Putative LysE/RhtB family amino acid efflux pump	NA	NA	NA	NA	NA
AVT59253.1|2940621_2940729_+	hypothetical protein	NA	NA	NA	NA	NA
AVT59254.1|2940900_2941440_-	isopentenyl-diphosphate delta-isomerase	NA	NA	NA	NA	NA
AVT59255.1|2941540_2943628_-	periplasmic beta-glucosidase	NA	NA	NA	NA	NA
AVT59256.1|2944240_2944927_+	Glutathione S-transferase domain protein	NA	NA	NA	NA	NA
AVT59257.1|2945002_2945950_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AVT59258.1|2946099_2946609_-	hypothetical protein	NA	NA	NA	NA	NA
AVT59259.1|2946678_2947035_-	FMN-binding domain protein	NA	NA	NA	NA	NA
AVT59260.1|2947095_2947638_-	adenylate cyclase	NA	NA	NA	NA	NA
AVT59261.1|2948010_2948559_-	hypothetical protein	NA	NA	NA	NA	NA
AVT59262.1|2948576_2949524_-	homocysteine S-methyltransferase	NA	NA	NA	NA	NA
AVT59263.1|2949516_2950929_-	S-methylmethionine transporter	NA	NA	NA	NA	NA
AVT59264.1|2951279_2952212_-|tRNA	tRNA-dihydrouridine synthase C	tRNA	NA	NA	NA	NA
>prophage 7
CP024842	Pectobacterium carotovorum strain 3-2 chromosome, complete genome	4975878	3718659	3724080	4975878		Mycobacterium_phage(33.33%)	6	NA	NA
AVT59936.1|3718659_3718899_+	glutaredoxin	NA	V5UN81	Mycobacterium_phage	59.5	9.1e-19
AVT59937.1|3718909_3719317_+	ribonucleotide reductase stimulatory protein	NA	A0A220BYR7	Staphylococcus_phage	26.5	4.7e-07
AVT59938.1|3719295_3721476_+	ribonucleoside-diphosphate reductase, alpha subunit	NA	A8E2R1	Enterococcus_phage	50.2	1.1e-203
AVT59939.1|3721500_3722463_+	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	73.6	2.3e-137
AVT59940.1|3722821_3723559_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	37.1	2.5e-38
AVT59941.1|3723615_3724080_+	RNase HI	NA	J9Q745	Salmonella_phage	56.1	1.8e-47
>prophage 8
CP024842	Pectobacterium carotovorum strain 3-2 chromosome, complete genome	4975878	4456279	4464933	4975878		Dickeya_phage(42.86%)	7	NA	NA
AVT60582.1|4456279_4457404_+	pectate lyase I	NA	A0A140XB77	Dickeya_phage	72.5	1.3e-54
AVT60583.1|4458072_4459197_+	pectate lyase II	NA	A0A140XB77	Dickeya_phage	73.2	1.8e-56
AVT60584.1|4459840_4460965_+	pectate lyase III	NA	A0A140XB77	Dickeya_phage	76.8	6.6e-59
AVT60585.1|4461134_4462412_+	pectate lyase	NA	A0A1B1IPS8	uncultured_Mediterranean_phage	33.1	9.9e-35
AVT60586.1|4462493_4463078_-	Peptidyl-prolyl cis-trans isomerase A	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	35.2	1.6e-11
AVT60587.1|4463287_4464097_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.5	2.3e-29
AVT60588.1|4464108_4464933_-	ABC transporter related protein	NA	G9BWD6	Planktothrix_phage	30.0	4.0e-13
