assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003031935.1_ASM303193v1	CP025221	Listeria monocytogenes strain PIR00543 chromosome, complete genome	3	543382-543668	1,2,2	PILER-CR,CRT,CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,DEDDh,RT,csn2,cas2,cas1,cas9	Orphan	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,TTTTAGTTACTTATTGTGAAATGTAAAT	29,29,28	1	1	543604-543639	CP025221.1_693959-693924	I-A:I-A:I-A	4,4,4	4	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh,RT,csn2,cas2,cas1,cas9	NA|133aa|up_5|CP025221.1_538372_538771_+,NA|193aa|down_0|CP025221.1_544059_544638_+	NA|217aa|up_9|CP025221.1_534435_535086_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|CP025221.1_535194_537255_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|CP025221.1_537258_537861_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|CP025221.1_537888_538356_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|CP025221.1_538372_538771_+	NA	NA|217aa|up_4|CP025221.1_538781_539432_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|CP025221.1_539428_540475_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|CP025221.1_540490_540784_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|CP025221.1_540798_542070_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|CP025221.1_542209_543145_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|CP025221.1_544059_544638_+	NA	NA|227aa|down_1|CP025221.1_544744_545425_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|CP025221.1_545449_545809_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|CP025221.1_545815_546274_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|CP025221.1_546655_548491_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|CP025221.1_548591_549023_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|CP025221.1_549069_550500_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|CP025221.1_550620_551436_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|123aa|down_8|CP025221.1_551716_552085_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_9|CP025221.1_552232_553648_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCA_003031935.1_ASM303193v1	CP025221	Listeria monocytogenes strain PIR00543 chromosome, complete genome	4	2559969-2560130	3	CRISPRCasFinder	no	WYL	csa3,DinG,cas3,WYL,casR,DEDDh,RT,csn2,cas2,cas1,cas9	Unclear	TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	55	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh,RT,csn2,cas2,cas1,cas9	NA|140aa|up_7|CP025221.1_2545258_2545678_-,NA|58aa|down_3|CP025221.1_2562315_2562489_-	WYL|299aa|up_9|CP025221.1_2543572_2544469_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|190aa|up_8|CP025221.1_2544513_2545083_-	cd06259, YdcF-like, YdcF-like	NA|140aa|up_7|CP025221.1_2545258_2545678_-	NA	NA|1311aa|up_6|CP025221.1_2546627_2550560_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|315aa|up_5|CP025221.1_2550574_2551519_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|1092aa|up_4|CP025221.1_2551578_2554854_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|303aa|up_3|CP025221.1_2555236_2556145_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|155aa|up_2|CP025221.1_2556200_2556665_-	pfam01668, SmpB, SmpB protein	NA|794aa|up_1|CP025221.1_2556680_2559062_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|249aa|up_0|CP025221.1_2559095_2559842_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|down_0|CP025221.1_2560204_2560438_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|248aa|down_1|CP025221.1_2560537_2561281_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|240aa|down_2|CP025221.1_2561463_2562183_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|58aa|down_3|CP025221.1_2562315_2562489_-	NA	NA|431aa|down_4|CP025221.1_2562591_2563884_-	PRK00077, eno, enolase; Provisional	NA|511aa|down_5|CP025221.1_2564019_2565552_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|252aa|down_6|CP025221.1_2565553_2566309_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|down_7|CP025221.1_2566354_2567545_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|down_8|CP025221.1_2567679_2568690_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|349aa|down_9|CP025221.1_2568723_2569770_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
GCA_003031935.1_ASM303193v1	CP025221	Listeria monocytogenes strain PIR00543 chromosome, complete genome	5	2721399-2722359	4,3,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,cas3,WYL,casR,DEDDh,RT,csn2,cas2,cas1,cas9	Type II-B,Type II-A,Type II-C	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	14,14,13	14	TypeII-B,TypeII-A,TypeII-C	csa3,DinG,cas3,WYL,casR,DEDDh,RT,csn2,cas2,cas1,cas9	NA|216aa|up_6|CP025221.1_2708983_2709631_-,NA|121aa|up_0|CP025221.1_2720510_2720873_-,NA|163aa|down_4|CP025221.1_2728873_2729362_-	NA|281aa|up_9|CP025221.1_2705525_2706368_+	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|494aa|up_8|CP025221.1_2706415_2707897_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|296aa|up_7|CP025221.1_2707997_2708885_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|216aa|up_6|CP025221.1_2708983_2709631_-	NA	NA|174aa|up_5|CP025221.1_2709646_2710168_-	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily	NA|343aa|up_4|CP025221.1_2716227_2717256_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|CP025221.1_2717524_2719051_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|CP025221.1_2719092_2719944_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|CP025221.1_2719965_2720388_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|121aa|up_0|CP025221.1_2720510_2720873_-	NA	csn2|221aa|down_0|CP025221.1_2722487_2723150_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|CP025221.1_2723139_2723481_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|CP025221.1_2723477_2724344_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|CP025221.1_2724344_2728349_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|163aa|down_4|CP025221.1_2728873_2729362_-	NA	NA|462aa|down_5|CP025221.1_2729371_2730757_-	pfam04740, LXG, LXG domain of WXG superfamily	NA|131aa|down_6|CP025221.1_2731048_2731441_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_7|CP025221.1_2731462_2731900_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_8|CP025221.1_2732094_2732841_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_9|CP025221.1_2732846_2733644_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]
