The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP027677	Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 chromosome, complete genome	4887378	34853	39105	4887378		Salmonella_phage(100.0%)	8	NA	NA
AWD06820.1|34853_35711_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	95.1	8.1e-158
AWD06821.1|35707_35935_-	hypothetical protein	NA	E5G6L7	Salmonella_phage	97.3	2.3e-35
AWD06822.1|35934_36168_-	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	96.1	1.2e-31
AWD06823.1|36235_36577_-	hypothetical protein	NA	E5G6L5	Salmonella_phage	98.2	1.3e-55
AWD06824.1|36658_36907_+	hypothetical protein	NA	NA	NA	NA	NA
AWD06825.1|36992_37289_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
AWD06826.1|37838_38060_-	regulator	NA	NA	NA	NA	NA
AWD06827.1|38166_39105_+	Repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	39.6	6.1e-34
>prophage 2
CP027677	Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 chromosome, complete genome	4887378	358472	408368	4887378	head,lysis,tail,protease,integrase,terminase	Salmonella_phage(58.9%)	74	357387:357433	408382:408428
357387:357433	attL	AATGGCGCGCCCTGCAGGATTCGAACCTGCGACCCACGGCTTAGAAG	NA	NA	NA	NA
AWD11276.1|358472_358580_+	hypothetical protein	NA	S4TND2	Salmonella_phage	85.3	2.2e-09
AWD07101.1|358753_359935_-	hypothetical protein	NA	S4TSP4	Salmonella_phage	69.9	8.5e-57
AWD07102.1|359944_360904_-	hypothetical protein	NA	H6WRW5	Salmonella_phage	96.2	2.3e-177
AWD07103.1|360912_364089_-	hypothetical protein	NA	I6R9B3	Salmonella_phage	93.8	0.0e+00
AWD07104.1|364098_364626_-|tail	tail assembly protein	tail	I6RSM0	Salmonella_phage	93.8	4.2e-64
AWD07105.1|364568_365288_-|tail	phage tail protein	tail	I6S1R8	Salmonella_phage	97.5	1.2e-143
AWD11277.1|365287_365992_-|tail	phage minor tail protein L	tail	A0A1V0E5N2	Salmonella_phage	97.9	2.7e-135
AWD07106.1|366160_366418_+	hypothetical protein	NA	K7P7V5	Enterobacteria_phage	87.7	9.5e-30
AWD07107.1|366629_366977_-|tail	phage tail protein	tail	A0A1V0E5N3	Salmonella_phage	95.7	1.1e-60
AWD07108.1|367069_367468_+	hypothetical protein	NA	A0A1V0E5N6	Salmonella_phage	100.0	2.2e-70
AWD07109.1|367468_370663_-	hypothetical protein	NA	Q5G8W8	Enterobacteria_phage	55.0	4.7e-251
AWD07110.1|370838_371036_+	hypothetical protein	NA	H6WRV6	Salmonella_phage	100.0	5.6e-30
AWD07111.1|371019_371232_-	hypothetical protein	NA	H6WRV5	Salmonella_phage	95.7	5.4e-31
AWD07112.1|371306_371594_-	hypothetical protein	NA	A0A1V0E5N1	Salmonella_phage	100.0	1.8e-45
AWD07113.1|371695_372049_-	hypothetical protein	NA	A0A1V0E5P9	Salmonella_phage	100.0	4.2e-60
AWD07114.1|372181_372910_-	hypothetical protein	NA	A0A0P0ZDC0	Stx2-converting_phage	64.6	4.7e-74
AWD07115.1|373840_374008_-	Arc family DNA binding domain-containing protein	NA	G9L6D7	Escherichia_phage	76.4	2.7e-17
AWD07116.1|374133_374589_+	Arc family DNA-binding protein	NA	G9L6D6	Escherichia_phage	54.5	3.5e-27
AWD07117.1|374610_375339_-	DNA-binding protein	NA	I6S1R0	Salmonella_phage	99.2	2.0e-141
AWD07118.1|375560_376214_-	hypothetical protein	NA	H6WRU2	Salmonella_phage	99.5	1.3e-120
AWD07119.1|376258_376996_-	hypothetical protein	NA	Q5G8X3	Enterobacteria_phage	98.8	2.7e-130
AWD07120.1|377011_377398_-	hypothetical protein	NA	Q5G8X4	Enterobacteria_phage	97.7	3.8e-67
AWD07121.1|377394_377790_-	hypothetical protein	NA	Q5G8X5	Enterobacteria_phage	100.0	7.2e-69
AWD07122.1|377797_378160_-	hypothetical protein	NA	I6S1Q5	Salmonella_phage	95.8	1.3e-64
AWD07123.1|378143_378332_-	hypothetical protein	NA	I6R0P9	Salmonella_phage	100.0	1.4e-30
AWD07124.1|378331_378733_-	hypothetical protein	NA	I6S619	Salmonella_phage	97.7	7.8e-71
AWD07125.1|378784_378964_-	glycoprotein	NA	I6R9A3	Salmonella_phage	100.0	6.8e-27
AWD07126.1|378973_380050_-	hypothetical protein	NA	A0A1V0E5P6	Salmonella_phage	98.6	1.4e-204
AWD07127.1|380067_380517_-	hypothetical protein	NA	H6WRT3	Salmonella_phage	100.0	1.6e-77
AWD07128.1|380529_381792_-	hypothetical protein	NA	H6WRT2	Salmonella_phage	99.5	1.5e-237
AWD07129.1|381807_382767_-|head	phage head morphogenesis protein	head	H6WRT1	Salmonella_phage	99.7	4.6e-178
AWD07130.1|382720_384073_-	DUF1073 domain-containing protein	NA	H6WRT0	Salmonella_phage	99.8	1.5e-259
AWD07131.1|384205_385525_-|terminase	PBSX family phage terminase large subunit	terminase	H6WRS9	Salmonella_phage	99.3	3.5e-261
AWD07132.1|385508_385940_-|terminase	terminase small subunit	terminase	A0A1V0E5Q4	Salmonella_phage	100.0	7.6e-72
AWD07133.1|386341_386821_-	DUF2829 domain-containing protein	NA	A0A1Y0T2L3	Pseudomonas_phage	59.7	5.5e-55
AWD07134.1|386902_387055_-	hypothetical protein	NA	K7PKL2	Enterobacteria_phage	98.0	3.6e-21
AWD07135.1|387042_387510_-|lysis	lysis protein	lysis	A0A291AWW3	Escherichia_phage	96.1	1.4e-74
AWD11278.1|387506_388004_-	lysozyme	NA	A0A192Y6U3	Salmonella_phage	98.8	3.2e-90
AWD07136.1|387981_388185_-	hypothetical protein	NA	I6R0S9	Salmonella_phage	100.0	1.1e-33
AWD07137.1|388434_388656_+	hypothetical protein	NA	NA	NA	NA	NA
AWD07138.1|389290_389914_-	antitermination protein	NA	K7PM87	Enterobacteria_phage	100.0	3.0e-114
AWD07139.1|389910_390576_-	serine/threonine protein phosphatase	NA	K7P721	Enterobacteria_phage	99.1	1.9e-130
AWD07140.1|390553_390760_-	protein ninH	NA	Q716C0	Shigella_phage	100.0	7.3e-33
AWD07141.1|390756_391359_-	recombination protein NinG	NA	A0A1U9AJF8	Stx1_converting_phage	96.1	9.8e-94
AWD07142.1|391333_391900_-	endonuclease	NA	A0A1U9AJK5	Stx1_converting_phage	99.5	6.6e-108
AWD07143.1|391892_392069_-	protein ninF	NA	Q76H71	Enterobacteria_phage	96.6	2.5e-26
AWD07144.1|392061_392403_-	DUF2591 domain-containing protein	NA	Q76H72	Enterobacteria_phage	99.1	1.0e-63
AWD07145.1|392405_392582_-	NinE family protein	NA	Q716C5	Shigella_phage	100.0	1.0e-27
AWD07146.1|392578_393106_-	phage N-6-adenine-methyltransferase	NA	K7PJZ4	Enterobacterial_phage	99.4	2.3e-99
AWD11279.1|393102_393525_-	hypothetical protein	NA	A0A2H4FNF5	Salmonella_phage	80.7	4.8e-63
AWD07147.1|393517_393745_-	hypothetical protein	NA	A0A1I9LJP7	Stx_converting_phage	52.9	6.7e-11
AWD07148.1|393833_395270_-	helicase DnaB	NA	E7C9R5	Salmonella_phage	99.0	1.3e-272
AWD07149.1|395259_396150_-	DNA replication protein	NA	Q716D3	Shigella_phage	92.6	6.7e-147
AWD07150.1|396330_396627_-	hypothetical protein	NA	A4KWW1	Enterobacteria_phage	99.0	1.5e-47
AWD07151.1|396736_396952_-	XRE family transcriptional regulator	NA	A0A0N7C2U7	Escherichia_phage	100.0	2.2e-35
AWD11280.1|397027_397723_+	LexA family transcriptional repressor	NA	A0A0N7BTS4	Escherichia_phage	97.0	2.0e-130
AWD07152.1|398416_398779_+	antitermination N domain protein	NA	K7PHE0	Enterobacteria_phage	98.3	2.0e-57
AWD07153.1|399156_399627_+	hypothetical protein	NA	A0A1I9LJN4	Stx_converting_phage	98.1	4.5e-86
AWD07154.1|399786_400101_+	superinfection exclusion protein	NA	E7C9Q4	Salmonella_phage	98.1	2.7e-55
AWD11281.1|400170_400332_+|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	E7C9Q3	Salmonella_phage	100.0	4.9e-24
AWD07155.1|400324_400438_+	host cell division inhibitory peptide Kil	NA	C6ZR39	Salmonella_phage	100.0	7.8e-13
AWD07156.1|400434_400623_+	hypothetical protein	NA	C6ZR38	Salmonella_phage	100.0	1.3e-28
AWD07157.1|400631_401339_+	recombinase	NA	E7C9Q0	Salmonella_phage	95.3	4.3e-133
AWD07158.1|401339_401798_+	single-stranded DNA-binding protein	NA	C6ZR36	Salmonella_phage	89.0	2.6e-70
AWD07159.1|401806_402286_+	hypothetical protein	NA	Q716E9	Shigella_phage	91.8	4.2e-87
AWD07160.1|402294_402843_+	3'-5' exoribonuclease	NA	C6ZR35	Salmonella_phage	98.9	8.6e-105
AWD07161.1|402858_403152_+	RecBCD nuclease inhibitor	NA	A0A1V0E5L7	Salmonella_phage	96.9	1.8e-48
AWD07162.1|403162_403333_+	DUF2737 domain-containing protein	NA	I6S642	Salmonella_phage	98.2	1.8e-24
AWD07163.1|403329_403947_+	Eae-like protein	NA	Q5G8U6	Enterobacteria_phage	64.4	1.2e-65
AWD07164.1|404056_404572_+	DUF262 domain-containing protein	NA	Q8HAA5	Salmonella_phage	99.4	2.1e-97
AWD07165.1|404568_405096_+	hypothetical protein	NA	Q8HAA6	Salmonella_phage	73.8	9.0e-43
AWD07166.1|405097_405316_+	sugar acetyltransferase inhibitor	NA	C6ZR28	Salmonella_phage	95.8	2.0e-33
AWD07167.1|405319_405931_+	DUF550 domain-containing protein	NA	K7PGV7	Enterobacterial_phage	84.7	1.6e-54
AWD07168.1|407204_408368_+|integrase	site-specific integrase	integrase	B9UDL9	Salmonella_phage	99.0	1.6e-225
408382:408428	attR	AATGGCGCGCCCTGCAGGATTCGAACCTGCGACCCACGGCTTAGAAG	NA	NA	NA	NA
>prophage 3
CP027677	Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 chromosome, complete genome	4887378	1436864	1483828	4887378	tRNA,tail,plate	Burkholderia_phage(40.91%)	49	NA	NA
AWD08082.1|1436864_1437863_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AWD08083.1|1437950_1439261_-	conjugal transfer protein	NA	NA	NA	NA	NA
AWD08084.1|1439507_1440023_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
AWD08085.1|1440122_1440332_-	CsbD family protein	NA	NA	NA	NA	NA
AWD11323.1|1440353_1440467_-	hypothetical protein	NA	NA	NA	NA	NA
AWD08086.1|1440463_1441789_-	MATE family efflux transporter	NA	NA	NA	NA	NA
AWD08087.1|1441967_1442576_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
AWD08088.1|1442684_1443053_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AWD08089.1|1443223_1445644_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
AWD08090.1|1445742_1446615_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
AWD08091.1|1446628_1447126_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AWD08092.1|1447306_1448224_-	maltose operon protein MalM	NA	NA	NA	NA	NA
AWD08093.1|1448387_1449746_-	maltoporin	NA	NA	NA	NA	NA
AWD08094.1|1449834_1450944_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
AWD08095.1|1451305_1452496_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
AWD08096.1|1452627_1454172_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
AWD08097.1|1454186_1455077_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
AWD08098.1|1455242_1455653_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
AWD08099.1|1455795_1457892_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
AWD08100.1|1457891_1458629_-	hypothetical protein	NA	NA	NA	NA	NA
AWD08101.1|1458625_1459264_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
AWD08102.1|1459327_1459570_-	outer membrane protein	NA	NA	NA	NA	NA
AWD08103.1|1460013_1461663_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AWD08104.1|1462007_1463357_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
AWD08105.1|1463487_1463835_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
AWD08106.1|1464410_1464698_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
AWD08107.1|1464700_1465306_+	lytic murein transglycosylase	NA	Q5ZQZ1	Pseudomonas_phage	59.9	1.2e-59
AWD08108.1|1465318_1465633_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
AWD08109.1|1466243_1466441_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
AWD08110.1|1466430_1467858_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	71.2	1.4e-194
AWD08111.1|1467857_1468382_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
AWD08112.1|1468433_1468751_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
AWD08113.1|1468710_1468839_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
AWD08114.1|1468935_1471290_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.9	6.2e-67
AWD08115.1|1471289_1472243_+	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	1.8e-36
AWD08116.1|1472242_1472452_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
AWD08117.1|1472439_1473483_+	phage protein D	NA	Q6QIA2	Burkholderia_phage	45.3	1.9e-76
AWD08118.1|1473492_1474215_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	5.1e-12
AWD08119.1|1474223_1474466_+	hypothetical protein	NA	NA	NA	NA	NA
AWD08120.1|1474541_1474904_+	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
AWD08121.1|1474900_1475830_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	84.4	6.1e-151
AWD08122.1|1475829_1477377_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	2.5e-48
AWD08123.1|1477540_1477900_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	4.7e-35
AWD08124.1|1477890_1479006_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	51.7	3.4e-100
AWD08125.1|1478998_1479631_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
AWD08126.1|1479633_1481292_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.7	1.0e-52
AWD08127.1|1481298_1481913_+	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
AWD08128.1|1481909_1482365_+	hypothetical protein	NA	NA	NA	NA	NA
AWD08129.1|1483099_1483828_+	hypothetical protein	NA	A0A292GAQ8	Xanthomonas_phage	28.2	3.5e-13
>prophage 4
CP027677	Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 chromosome, complete genome	4887378	1622612	1659922	4887378	head,plate,lysis,terminase,integrase,portal,holin,tail,capsid	Escherichia_phage(44.44%)	49	1622459:1622501	1654980:1655022
1622459:1622501	attL	AAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
AWD08242.1|1622612_1622894_-	transcriptional regulator	NA	M1SNR2	Escherichia_phage	96.8	1.3e-48
AWD08243.1|1622912_1624076_-	hypothetical protein	NA	A0A0F7LDZ2	Escherichia_phage	99.0	9.1e-205
AWD08244.1|1624075_1624555_-|tail	phage tail protein	tail	O64315	Escherichia_phage	100.0	5.1e-85
AWD08245.1|1624569_1627017_-|tail	phage tail tape measure protein	tail	M1T2S3	Escherichia_phage	99.4	0.0e+00
AWD11327.1|1627009_1627129_-|tail	GpE family phage tail protein	tail	A0A0F7LCR6	Escherichia_phage	100.0	1.0e-15
AWD08246.1|1627161_1627437_-|tail	phage tail assembly protein	tail	A0A0F7LDQ8	Escherichia_phage	100.0	5.7e-41
AWD08247.1|1627492_1628011_-|tail	phage major tail tube protein	tail	A0A0F7LDZ1	Escherichia_phage	100.0	1.4e-93
AWD08248.1|1628023_1629214_-|tail	phage tail protein	tail	A0A0F7LBW9	Escherichia_phage	100.0	1.6e-225
AWD08249.1|1629273_1629867_-	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	97.5	6.1e-104
AWD08250.1|1629894_1631178_+|tail	phage tail protein	tail	A0A1B0VFW4	Salmonella_phage	99.5	3.9e-241
AWD08251.1|1631147_1631765_+|tail	tail assembly chaperone	tail	A0A1B0VCD0	Salmonella_phage	100.0	5.7e-113
AWD08252.1|1631768_1632176_-|tail	tail assembly chaperone	tail	A0A1B0V844	Salmonella_phage	100.0	4.9e-73
AWD08253.1|1633983_1634595_-|tail	phage tail protein I	tail	A0A0F7LA36	Escherichia_phage	100.0	1.7e-117
AWD08254.1|1634587_1635496_-|plate	baseplate assembly protein	plate	A0A0F7LCJ3	Escherichia_phage	99.7	2.6e-162
AWD08255.1|1635500_1635848_-|plate	baseplate assembly protein	plate	A0A0F7L9X3	Escherichia_phage	100.0	1.7e-58
AWD08256.1|1635844_1636480_-|plate	phage baseplate assembly protein V	plate	U5N3F0	Enterobacteria_phage	98.1	1.6e-110
AWD08257.1|1636546_1636999_-	phage virion morphogenesis protein	NA	A0A0F7LDR6	Escherichia_phage	100.0	8.2e-77
AWD08258.1|1636991_1637459_-|tail	phage tail protein	tail	U5N0S7	Enterobacteria_phage	98.1	3.3e-81
AWD08259.1|1637421_1637595_-|lysis	phage lysis protein	lysis	Q7Y4E1	Escherichia_virus	94.7	5.2e-24
AWD08260.1|1637566_1637992_-	protein lysB	NA	U5N3W5	Enterobacteria_phage	95.0	5.2e-65
AWD08261.1|1637979_1638405_-	protein lysA	NA	A0A0F7LBP4	Escherichia_phage	91.5	6.8e-57
AWD08262.1|1638419_1638917_-	lysozyme	NA	A0A0F7LBS0	Escherichia_phage	100.0	3.1e-93
AWD08263.1|1638916_1639198_-|holin	holin	holin	A0A0F7LA12	Escherichia_phage	100.0	1.3e-43
AWD08264.1|1639201_1639405_-|tail	phage tail protein	tail	A0A0F7LCN2	Escherichia_phage	100.0	3.0e-31
AWD08265.1|1639404_1639914_-|head	head completion/stabilization protein	head	U5N0S3	Enterobacteria_phage	99.4	2.5e-90
AWD08266.1|1640013_1640757_-|terminase	terminase	terminase	A0A0F7LBP7	Escherichia_phage	98.8	6.0e-125
AWD08267.1|1640760_1641834_-|capsid	phage major capsid protein, P2 family	capsid	Q94MC7	Enterobacteria_phage	99.2	5.7e-201
AWD08268.1|1641892_1642747_-|capsid	capsid scaffolding protein	capsid	Q94MF5	Enterobacteria_phage	99.6	2.2e-139
AWD08269.1|1642920_1644693_+	oxidoreductase	NA	A0A0F7LCK3	Escherichia_phage	99.8	0.0e+00
AWD08270.1|1644692_1645727_+|portal	phage portal protein	portal	Q858W8	Yersinia_virus	99.4	4.2e-201
AWD08271.1|1646100_1647243_+	DUF262 domain-containing protein	NA	A0A0R6PKN1	Moraxella_phage	42.9	1.6e-73
AWD08272.1|1647244_1647925_+	hypothetical protein	NA	A0A0R6PER3	Moraxella_phage	31.7	9.9e-18
AWD11328.1|1647954_1648977_-	DNA (cytosine-5-)-methyltransferase	NA	A0A0R6PG08	Moraxella_phage	59.0	5.5e-113
AWD08273.1|1649063_1651361_-	replication endonuclease	NA	Q858T4	Yersinia_virus	97.5	0.0e+00
AWD08274.1|1651350_1651626_-	hypothetical protein	NA	U5N3W1	Enterobacteria_phage	100.0	3.8e-45
AWD08275.1|1651622_1651847_-	hypothetical protein	NA	S4TRY6	Salmonella_phage	100.0	2.9e-35
AWD08276.1|1651849_1652149_-	hypothetical protein	NA	S4TUD1	Salmonella_phage	99.0	3.2e-45
AWD08277.1|1652148_1652373_-	DUF2732 domain-containing protein	NA	S4TP68	Salmonella_phage	100.0	4.7e-33
AWD08278.1|1652436_1652937_-	replication protein B	NA	M1SV55	Escherichia_phage	100.0	2.6e-92
AWD08279.1|1653106_1653379_-	hypothetical protein	NA	Q1JS36	Enterobacteria_phage	100.0	1.4e-47
AWD08280.1|1653515_1653809_+	transcriptional regulator	NA	Q1JS37	Enterobacteria_phage	100.0	2.7e-49
AWD08281.1|1653878_1654859_+|integrase	integrase	integrase	S4TP66	Salmonella_phage	100.0	4.7e-186
AWD08282.1|1655044_1655545_-	stress adaptor protein CpxP	NA	NA	NA	NA	NA
1654980:1655022	attR	AAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
AWD08283.1|1655695_1656394_+	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
AWD08284.1|1656390_1657764_+	two-component system sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	25.6	7.2e-15
AWD08285.1|1657811_1658015_-	hypothetical protein	NA	NA	NA	NA	NA
AWD08286.1|1658135_1658531_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
AWD08287.1|1658542_1659295_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA	NA
AWD08288.1|1659301_1659922_-	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	58.9	2.4e-63
>prophage 5
CP027677	Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 chromosome, complete genome	4887378	2532763	2578441	4887378	head,tail,tRNA,integrase,portal,holin,terminase,capsid	Cronobacter_phage(65.0%)	54	2526829:2526849	2577156:2577176
2526829:2526849	attL	GATAAGCGCAGCGCCATCAGG	NA	NA	NA	NA
AWD09065.1|2532763_2534332_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.5	2.2e-12
AWD09066.1|2534328_2534976_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AWD09067.1|2535207_2535975_+	siderophore-interacting protein	NA	NA	NA	NA	NA
AWD09068.1|2536232_2538014_-	ATP-binding protein	NA	X2KLG0	Campylobacter_phage	23.2	6.4e-08
AWD09069.1|2538003_2539041_-|integrase	integrase	integrase	F1BUS9	Erwinia_phage	63.9	1.5e-121
AWD09070.1|2539044_2539611_-	hypothetical protein	NA	Q4ZA70	Staphylococcus_virus	32.8	1.3e-18
AWD09071.1|2539627_2540209_-	phage repressor protein	NA	A0A218M4J1	Erwinia_phage	37.2	1.2e-27
AWD09072.1|2540352_2540574_+	regulator	NA	NA	NA	NA	NA
AWD09073.1|2540604_2541108_+	hypothetical protein	NA	F1BUN6	Cronobacter_phage	72.5	3.5e-60
AWD09074.1|2541117_2541345_+	hypothetical protein	NA	NA	NA	NA	NA
AWD09075.1|2541334_2541760_+	hypothetical protein	NA	F1BUN5	Cronobacter_phage	49.6	2.2e-23
AWD09076.1|2541759_2542161_+	hypothetical protein	NA	F1BUN2	Cronobacter_phage	66.9	1.4e-48
AWD09077.1|2542228_2542462_+	DUF2732 domain-containing protein	NA	NA	NA	NA	NA
AWD09078.1|2542452_2543313_+	DNA adenine methylase	NA	F1BUN1	Cronobacter_phage	82.0	1.1e-130
AWD09079.1|2543309_2545331_+	replication endonuclease	NA	F1BUM9	Cronobacter_phage	74.5	7.9e-297
AWD09080.1|2545450_2545657_+	hypothetical protein	NA	NA	NA	NA	NA
AWD09081.1|2545630_2545954_-	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	92.3	8.0e-50
AWD09082.1|2545950_2547012_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	76.8	6.7e-162
AWD09083.1|2547008_2548784_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	83.1	9.8e-291
AWD09084.1|2548944_2549748_+|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	56.0	2.0e-78
AWD09085.1|2549809_2550832_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	81.5	3.9e-159
AWD09086.1|2550835_2551537_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	66.8	9.4e-88
AWD09087.1|2551582_2552086_+|head	head completion protein	head	F1BUL8	Cronobacter_phage	82.7	1.8e-64
AWD09088.1|2552082_2552589_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	69.1	1.2e-63
AWD09089.1|2552585_2553293_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	76.1	1.3e-100
AWD09090.1|2553289_2554417_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	83.7	1.9e-175
AWD09091.1|2554413_2554869_+	DUF2597 domain-containing protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
AWD09092.1|2554878_2555172_+|holin	holin	holin	C7BGD7	Burkholderia_phage	46.2	1.3e-14
AWD09093.1|2555168_2555510_+	hypothetical protein	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
AWD09094.1|2555509_2555842_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	70.9	1.5e-35
AWD09095.1|2555813_2556002_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	77.4	1.5e-21
AWD09096.1|2555988_2556246_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	63.4	3.6e-21
AWD09097.1|2556433_2558404_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	70.8	3.2e-274
AWD09098.1|2558400_2558730_+	DUF2590 domain-containing protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
AWD09099.1|2558726_2559911_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	78.4	6.7e-179
AWD09100.1|2559897_2560491_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.6	5.0e-90
AWD09101.1|2560500_2562735_+|tail	phage tail protein	tail	Q8HAB4	Salmonella_phage	73.7	7.2e-182
AWD09102.1|2562747_2563302_+|tail	tail fiber assembly protein	tail	S4TUB9	Salmonella_phage	89.0	2.7e-90
AWD09103.1|2563291_2564017_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	53.5	3.7e-63
AWD09104.1|2563988_2564534_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	72.0	3.2e-59
AWD09105.1|2564533_2566237_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.4	9.9e-224
AWD09106.1|2566988_2567174_+	hypothetical protein	NA	NA	NA	NA	NA
AWD09107.1|2567281_2567908_+	reverse transcriptase	NA	NA	NA	NA	NA
AWD09108.1|2568231_2568738_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
AWD09109.1|2568794_2569358_-	DUF1768 domain-containing protein	NA	A8E2M1	Enterococcus_phage	44.7	1.1e-33
AWD09110.1|2569417_2571400_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	9.0e-35
AWD09111.1|2571414_2573157_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	37.5	8.1e-72
AWD09112.1|2573392_2573608_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AWD09113.1|2573835_2574849_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.5	2.8e-109
AWD09114.1|2574752_2575091_-	hypothetical protein	NA	NA	NA	NA	NA
AWD09115.1|2575098_2575710_-	acyl-phosphate--glycerol-3-phosphate O-acyltransferase	NA	NA	NA	NA	NA
AWD09116.1|2575816_2576176_+	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA	NA
AWD09117.1|2576273_2577095_+	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
AWD09118.1|2577199_2578441_-|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	47.9	6.5e-92
2577156:2577176	attR	GATAAGCGCAGCGCCATCAGG	NA	NA	NA	NA
>prophage 6
CP027677	Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 chromosome, complete genome	4887378	3595265	3604436	4887378	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AWD10027.1|3595265_3596213_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
AWD10028.1|3596196_3596928_+	ABC transporter permease	NA	NA	NA	NA	NA
AWD10029.1|3596908_3597016_-	hypothetical protein	NA	NA	NA	NA	NA
AWD10030.1|3597075_3597807_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AWD10031.1|3598029_3599715_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
AWD10032.1|3599711_3600431_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AWD10033.1|3600477_3600945_+	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	89.7	1.1e-73
AWD10034.1|3601001_3601532_-	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
AWD10035.1|3601703_3602162_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AWD10036.1|3602402_3604436_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 7
CP027677	Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 chromosome, complete genome	4887378	3684257	3694764	4887378		Enterobacteria_phage(37.5%)	10	NA	NA
AWD10101.1|3684257_3685661_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	2.3e-21
AWD10102.1|3685838_3686732_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AWD10103.1|3687108_3688194_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
AWD10104.1|3688193_3689093_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
AWD11410.1|3689140_3690019_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	5.1e-107
AWD10105.1|3690019_3690571_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.0e-52
AWD10106.1|3690576_3691551_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AWD10107.1|3691566_3692340_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AWD10108.1|3692344_3693424_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.7e-16
AWD10109.1|3693450_3694764_+	LPS biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	9.1e-52
>prophage 8
CP027677	Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 chromosome, complete genome	4887378	4878013	4885325	4887378	integrase,protease	Ralstonia_phage(16.67%)	8	4872801:4872815	4884061:4884075
4872801:4872815	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
AWD11248.1|4878013_4878391_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
AWD11249.1|4878552_4878750_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11250.1|4878961_4881238_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
AWD11251.1|4881268_4881589_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AWD11252.1|4881912_4882134_+	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AWD11253.1|4882088_4882283_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11254.1|4882263_4884210_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	42.6	3.1e-40
4884061:4884075	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
AWD11255.1|4884206_4885325_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
>prophage 1
CP027678	Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 plasmid pSE12-01738-1, complete sequence	284485	17052	75069	284485	transposase,integrase	Escherichia_phage(55.56%)	59	10281:10295	39073:39087
10281:10295	attL	GATCAGAAGTACACT	NA	NA	NA	NA
AWD11485.1|17052_19986_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
AWD11486.1|19982_21320_-	site-specific recombinase	NA	NA	NA	NA	NA
AWD11487.1|22278_23088_-	DsbA family protein	NA	NA	NA	NA	NA
AWD11488.1|23194_23806_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11735.1|23865_24126_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11489.1|24321_24714_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11490.1|24738_25488_-	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
AWD11491.1|25635_26175_+	lytic transglycosylase	NA	NA	NA	NA	NA
AWD11492.1|26257_26815_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11493.1|26938_28000_+	HNH endonuclease	NA	NA	NA	NA	NA
AWD11494.1|28009_28516_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11495.1|28638_32589_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
AWD11496.1|32597_34013_-	conjugal transfer protein	NA	NA	NA	NA	NA
AWD11497.1|34002_35049_-	thioredoxin family protein	NA	NA	NA	NA	NA
AWD11498.1|35640_36153_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11499.1|36154_36955_-	trhR	NA	NA	NA	NA	NA
AWD11500.1|37714_38200_+	plasmid transfer protein	NA	NA	NA	NA	NA
AWD11501.1|38196_38934_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11502.1|38943_42090_+	helicase	NA	NA	NA	NA	NA
39073:39087	attR	GATCAGAAGTACACT	NA	NA	NA	NA
AWD11503.1|42089_44174_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11504.1|44173_45283_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11505.1|45269_45932_+	DUF4400 domain-containing protein	NA	NA	NA	NA	NA
AWD11506.1|45942_47124_+	S49 family peptidase	NA	B8QTU8	Erwinia_phage	29.2	7.5e-13
AWD11507.1|47125_47857_+	NERD domain-containing protein	NA	NA	NA	NA	NA
AWD11508.1|48143_48497_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11509.1|48562_48847_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11510.1|49203_49503_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11511.1|49935_50304_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11512.1|50529_51066_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11513.1|51133_51571_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11514.1|51615_51912_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11515.1|52046_52748_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11516.1|53062_53344_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11517.1|53409_54594_-	DNA-binding protein	NA	NA	NA	NA	NA
AWD11518.1|55010_55205_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11519.1|55697_56642_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11520.1|56737_57340_+	hypothetical protein	NA	A0A1V0E5L6	Salmonella_phage	42.6	1.7e-08
AWD11521.1|57399_57750_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11522.1|57796_58000_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11523.1|58281_58602_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11524.1|59210_59369_-	Hok/Gef family protein	NA	NA	NA	NA	NA
AWD11525.1|59764_60004_-	antitoxin RelB	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
AWD11526.1|60028_60223_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11527.1|60266_61190_-	cation transporter	NA	NA	NA	NA	NA
AWD11736.1|61389_61962_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
AWD11528.1|62999_63704_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AWD11529.1|63798_64056_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11530.1|64285_65077_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11531.1|65127_65328_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11737.1|65374_66298_+|transposase	IS5/IS1182 family transposase	transposase	Q9MCT5	Escherichia_phage	99.7	3.8e-177
AWD11532.1|66414_66744_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11533.1|68559_68799_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11534.1|68861_69173_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11535.1|69169_69364_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11536.1|69879_70584_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AWD11738.1|70743_72252_+|transposase	IS21-like element ISCfr8 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	32.7	9.9e-26
AWD11537.1|72238_72979_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	41.7	4.4e-43
AWD11538.1|73206_73761_-	aminoglycoside N-acetyltransferase AAC(6')-Ib3	NA	NA	NA	NA	NA
AWD11539.1|74364_75069_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
>prophage 2
CP027678	Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 plasmid pSE12-01738-1, complete sequence	284485	207068	264625	284485	transposase	Escherichia_phage(33.33%)	57	NA	NA
AWD11658.1|207068_208073_-|transposase	IS110-like element IS4321 family transposase	transposase	NA	NA	NA	NA
AWD11659.1|208151_211118_-|transposase	Tn3-like element ISPa38 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.2	0.0e+00
AWD11660.1|211276_211567_+	nucleotidyltransferase	NA	NA	NA	NA	NA
AWD11661.1|211563_211965_+	DUF86 domain-containing protein	NA	NA	NA	NA	NA
AWD11662.1|211954_212311_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AWD11663.1|212565_212892_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11664.1|212888_213389_+|transposase	transposase	transposase	NA	NA	NA	NA
AWD11665.1|213385_213757_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11666.1|213956_214661_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AWD11667.1|215171_215876_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AWD11668.1|215965_216730_-	resolvase	NA	I3WFA4	Macacine_betaherpesvirus	52.4	1.9e-25
AWD11669.1|216728_216920_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11670.1|217194_217872_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11671.1|217902_218526_-	RES domain-containing protein	NA	NA	NA	NA	NA
AWD11672.1|219056_219752_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11745.1|219927_220185_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11673.1|220211_221039_-	ParA family protein	NA	J9QE36	Clostridium_phage	27.4	2.0e-12
AWD11674.1|221217_222153_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11675.1|223047_223377_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11676.1|223898_225728_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11677.1|225897_228585_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11678.1|228736_229567_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11746.1|229682_229871_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
AWD11679.1|230951_231665_+	N-acetyltransferase	NA	NA	NA	NA	NA
AWD11680.1|231713_231980_+	transcriptional regulator	NA	NA	NA	NA	NA
AWD11681.1|232281_234258_-	excinuclease ABC subunit UvrB	NA	A7WKH8	Acidianus_filamentous_virus	39.0	7.1e-08
AWD11682.1|234544_234820_+	regulator	NA	NA	NA	NA	NA
AWD11683.1|234878_235988_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	30.3	1.8e-32
AWD11684.1|236038_236437_+	VOC family protein	NA	NA	NA	NA	NA
AWD11685.1|236594_237929_+	DUF3422 domain-containing protein	NA	NA	NA	NA	NA
AWD11686.1|237976_238807_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
AWD11687.1|238824_240135_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AWD11688.1|240338_242990_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	33.8	2.1e-156
AWD11689.1|243181_243613_+	DUF488 domain-containing protein	NA	NA	NA	NA	NA
AWD11690.1|243977_244253_+	regulator protein FrmR	NA	NA	NA	NA	NA
AWD11691.1|244938_246090_+	L-threonine dehydrogenase	NA	NA	NA	NA	NA
AWD11692.1|246250_246397_-	DUF2474 domain-containing protein	NA	NA	NA	NA	NA
AWD11693.1|246422_247433_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AWD11694.1|247432_248842_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AWD11695.1|249820_250201_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11696.1|250539_250743_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11697.1|250732_251023_-	korC	NA	NA	NA	NA	NA
AWD11698.1|251019_252057_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11699.1|252332_252596_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11700.1|252592_253159_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11701.1|254264_254747_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11702.1|254757_255510_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AWD11703.1|255786_256392_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11704.1|256519_256849_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AWD11705.1|256983_257427_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AWD11706.1|257662_258409_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11707.1|258426_259038_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
AWD11708.1|259004_259805_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11709.1|259883_260711_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11710.1|261751_262120_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11711.1|262803_263862_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AWD11712.1|263920_264625_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
>prophage 1
CP027679	Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 plasmid pSE12-01738-2, complete sequence	177190	36708	81208	177190	transposase,integrase	Streptococcus_phage(18.75%)	45	34052:34067	73133:73146
34052:34067	attL	GTAATTATCATAATTA	NA	NA	NA	NA
AWD11796.1|36708_37719_-|integrase	integrase	integrase	A0A0K0N6I5	Gordonia_phage	31.9	3.1e-07
34052:34067	attL	GTAATTATCATAATTA	NA	NA	NA	NA
AWD11797.1|37721_38258_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11798.1|38250_38538_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11799.1|38556_38877_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11800.1|39099_39702_+	hypothetical protein	NA	NA	NA	NA	NA
38962:38977	attR	GTAATTATCATAATTA	NA	NA	NA	NA
AWD11801.1|39717_40170_-	hypothetical protein	NA	NA	NA	NA	NA
38962:38977	attR	GTAATTATCATAATTA	NA	NA	NA	NA
AWD11802.1|40340_40781_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11803.1|40752_45006_-	RHS repeat protein	NA	A0A2H4JHK7	uncultured_Caudovirales_phage	47.6	1.1e-18
AWD11949.1|44960_45164_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11804.1|45138_45864_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11805.1|45977_46379_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11806.1|46994_47999_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AWD11807.1|48584_48935_+	mercuric transporter	NA	NA	NA	NA	NA
AWD11808.1|48948_49224_+	mercuric transporter periplasmic component	NA	NA	NA	NA	NA
AWD11950.1|49259_49682_+	mercury transport protein MerC	NA	NA	NA	NA	NA
AWD11809.1|49733_51428_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.0e-38
AWD11810.1|51445_51808_+	transcriptional regulator	NA	NA	NA	NA	NA
AWD11811.1|51804_52041_+	mercury resistance protein	NA	NA	NA	NA	NA
AWD11812.1|52037_52745_+	EAL domain-containing protein	NA	NA	NA	NA	NA
AWD11813.1|52783_54499_+|transposase	transposase	transposase	NA	NA	NA	NA
AWD11814.1|54501_55494_+|transposase	transposase	transposase	NA	NA	NA	NA
AWD11815.1|55462_55963_-	N-acetyltransferase	NA	NA	NA	NA	NA
AWD11816.1|55981_56161_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11817.1|56090_56930_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
AWD11818.1|56923_57226_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11819.1|57229_58042_-	subclass B1 metallo-beta-lactamase NDM-1	NA	NA	NA	NA	NA
AWD11820.1|58142_59168_-|transposase	IS30-like element ISAba125 family transposase	transposase	W5R8L2	Staphylococcus_phage	38.1	1.2e-51
AWD11821.1|59319_60099_-	APH(3')-VI family aminoglycoside O-phosphotransferase	NA	E4ZFP6	Streptococcus_phage	34.7	6.9e-31
AWD11822.1|60589_62131_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AWD11823.1|62535_63375_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
AWD11824.1|63368_63716_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
AWD11951.1|63884_64439_-	aminoglycoside N-acetyltransferase AAC(6')-Ib3	NA	NA	NA	NA	NA
AWD11825.1|64599_65559_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	40.5	1.3e-47
AWD11826.1|65449_66154_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AWD11827.1|67032_68058_-|transposase	IS30-like element ISAba125 family transposase	transposase	W5R8L2	Staphylococcus_phage	38.1	1.2e-51
AWD11828.1|68137_68917_-	APH(3')-VI family aminoglycoside O-phosphotransferase	NA	E4ZFP6	Streptococcus_phage	35.1	1.2e-30
AWD11829.1|69940_70645_-|transposase	IS6 family transposase IS15DII	transposase	A0A077SL39	Escherichia_phage	100.0	6.9e-139
AWD11830.1|71529_72072_+	DNA-binding protein	NA	NA	NA	NA	NA
AWD11831.1|72430_73315_-	Mph(E) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
AWD11832.1|73370_74846_-	ABC-F type ribosomal protection protein Msr(E)	NA	A0A1B0RXA0	Streptococcus_phage	59.0	2.3e-160
AWD11833.1|75295_76000_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AWD11952.1|76231_76555_+|transposase	transposase	transposase	NA	NA	NA	NA
AWD11834.1|76592_77150_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	81.3	5.8e-48
AWD11835.1|77152_80125_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.1	0.0e+00
AWD11836.1|80203_81208_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP027679	Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 plasmid pSE12-01738-2, complete sequence	177190	129219	174577	177190	tail,transposase,head	Escherichia_phage(23.08%)	55	NA	NA
AWD11886.1|129219_130482_-|transposase	IS1380 family transposase ISEc9	transposase	A0A1B0VDR3	Salmonella_phage	100.0	1.3e-39
AWD11887.1|130766_131159_-	conjugal transfer protein TraA	NA	NA	NA	NA	NA
AWD11888.1|131162_131741_-	type IV conjugative transfer system protein TraV	NA	NA	NA	NA	NA
AWD11889.1|131737_133054_-	conjugal transfer protein TraB	NA	NA	NA	NA	NA
AWD11890.1|133050_133968_-	conjugal transfer protein TraK	NA	NA	NA	NA	NA
AWD11891.1|133951_134578_-	pilus assembly protein	NA	NA	NA	NA	NA
AWD11892.1|134574_134856_-	type IV conjugative transfer system protein TraL	NA	NA	NA	NA	NA
AWD11893.1|135000_135378_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11894.1|135701_136364_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11895.1|136363_136741_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11896.1|136750_137197_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11897.1|137206_137836_-	DUF4400 domain-containing protein	NA	NA	NA	NA	NA
AWD11898.1|137792_138377_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11899.1|138387_140253_-	DUF87 domain-containing protein	NA	NA	NA	NA	NA
AWD11900.1|140249_143222_-	conjugal transfer protein TraI	NA	NA	NA	NA	NA
AWD11901.1|143389_144007_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11902.1|143988_144222_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11903.1|144221_146414_+	DNA topoisomerase 3	NA	A0A1X9I6W8	Streptococcus_phage	29.4	9.9e-43
AWD11904.1|146428_146917_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11905.1|147007_147307_-	RNA-binding protein	NA	A0A0K1LLW2	Caulobacter_phage	55.4	3.6e-20
AWD11906.1|147311_147518_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11907.1|147518_148136_-|head,tail	phage head-tail adapter protein	head,tail	NA	NA	NA	NA
AWD11908.1|148191_148848_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11909.1|148847_150275_-	DNA cytosine methyltransferase	NA	NA	NA	NA	NA
AWD11910.1|150278_150779_-	hypothetical protein	NA	I3UMJ0	Colwellia_phage	38.4	9.5e-18
AWD11911.1|150787_151120_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11955.1|151104_151536_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11912.1|151603_152278_-	thymidylate kinase	NA	NA	NA	NA	NA
AWD11913.1|152252_152534_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11914.1|152526_152904_-	hypothetical protein	NA	A0A2H4P7P5	Pseudomonas_phage	49.6	1.7e-22
AWD11915.1|153465_154101_+	restriction endonuclease subunit M	NA	NA	NA	NA	NA
AWD11916.1|154153_154426_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11917.1|154474_155656_-	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	28.7	2.4e-11
AWD11918.1|155659_156445_-	ParA family protein	NA	A0A1X9IGI7	Lactococcus_phage	26.4	6.1e-11
AWD11919.1|156618_156930_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11920.1|157236_158052_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	A0A0B5J4J5	Pandoravirus	27.6	5.9e-09
AWD11921.1|158112_158916_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA	NA
AWD11922.1|158915_159752_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
AWD11923.1|160057_160300_+	relaxase	NA	NA	NA	NA	NA
AWD11924.1|160331_161009_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AWD11925.1|161087_162287_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA	NA
AWD11926.1|162553_162859_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AWD11927.1|162886_164101_-	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	4.2e-19
AWD11928.1|164317_165202_-	DUF3363 domain-containing protein	NA	NA	NA	NA	NA
AWD11929.1|165232_166726_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AWD11930.1|166936_167161_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11931.1|167157_167895_-	resolvase	NA	NA	NA	NA	NA
AWD11932.1|168001_168493_+	hypothetical protein	NA	NA	NA	NA	NA
AWD11933.1|168526_169231_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AWD11934.1|169616_170033_+	fosfomycin resistance glutathione transferase FosA3	NA	Q2LI91	Bacillus_phage	35.6	2.0e-08
AWD11935.1|170037_170556_-	hypothetical protein	NA	NA	NA	NA	NA
AWD11936.1|170555_171344_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AWD11937.1|171843_172548_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AWD11938.1|172524_172722_+	hypothetical protein	NA	A0A077SL39	Escherichia_phage	94.7	1.4e-12
AWD11939.1|173044_174577_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
