assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003073515.1_ASM307351v1	CP029041	Salmonella enterica strain CFSAN051295 chromosome, complete genome	3	614669-614826	3	CRISPRCasFinder	no		cas3,PD-DExK,WYL,csa3,DEDDh,DinG,RT	Orphan	TTCACTTCTTCATAAAACCCGCTTCGGCGGGTTTTTGCTTTTACCGGGCG	50	1	1	614719-614776	CP029041.1_614946-615003	NA	1	1	Orphan	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,RT	NA,NA|55aa|down_8|CP029041.1_627470_627635_-	NA|258aa|up_9|CP029041.1_602592_603366_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|348aa|up_8|CP029041.1_603476_604520_-	PRK10309, PRK10309, galactitol-1-phosphate 5-dehydrogenase	NA|95aa|up_7|CP029041.1_605940_606225_-	PRK10310, PRK10310, PTS galactitol transporter subunit IIB	NA|155aa|up_6|CP029041.1_606255_606720_-	PRK09665, PRK09665, PTS galactitol transporter subunit IIA	NA|424aa|up_5|CP029041.1_606734_608006_-	PRK15052, PRK15052, tagatose-bisphosphate aldolase subunit GatZ	NA|285aa|up_4|CP029041.1_608125_608980_-	PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed	NA|524aa|up_3|CP029041.1_609237_610809_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|257aa|up_2|CP029041.1_611338_612109_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|CP029041.1_612134_613025_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|CP029041.1_613122_614268_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|313aa|down_0|CP029041.1_615961_616900_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_1|CP029041.1_616997_617987_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_2|CP029041.1_618007_619339_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_3|CP029041.1_619405_620614_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_4|CP029041.1_620647_622942_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|455aa|down_5|CP029041.1_623011_624376_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|down_6|CP029041.1_624690_626022_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|down_7|CP029041.1_626047_627358_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_8|CP029041.1_627470_627635_-	NA	NA|234aa|down_9|CP029041.1_627658_628360_-	COG1741, COG1741, Pirin-related protein [General function prediction only]
GCA_003073515.1_ASM307351v1	CP029041	Salmonella enterica strain CFSAN051295 chromosome, complete genome	4	955413-956420	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,PD-DExK,WYL,csa3,DEDDh,DinG,RT	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	15,16,16	16	Orphan	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,RT	NA,NA|74aa|down_2|CP029041.1_958027_958249_-,NA|81aa|down_6|CP029041.1_962408_962651_-,NA|75aa|down_8|CP029041.1_963801_964026_-	NA|179aa|up_9|CP029041.1_943958_944495_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|CP029041.1_944491_944962_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|CP029041.1_944976_945483_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|CP029041.1_945502_946276_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|CP029041.1_946288_948988_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|CP029041.1_949067_949655_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|CP029041.1_950262_951063_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP029041.1_951290_952928_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP029041.1_953010_954309_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP029041.1_954444_955116_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP029041.1_956517_957315_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP029041.1_957402_957765_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|74aa|down_2|CP029041.1_958027_958249_-	NA	NA|600aa|down_3|CP029041.1_958198_959998_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP029041.1_959997_961710_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|CP029041.1_961785_962520_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|81aa|down_6|CP029041.1_962408_962651_-	NA	NA|318aa|down_7|CP029041.1_962732_963686_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|75aa|down_8|CP029041.1_963801_964026_-	NA	NA|349aa|down_9|CP029041.1_966907_967954_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional
GCA_003073515.1_ASM307351v1	CP029041	Salmonella enterica strain CFSAN051295 chromosome, complete genome	5	965154-966893	2,5,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no		cas3,PD-DExK,WYL,csa3,DEDDh,DinG,RT	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	26,28,28,26	28	Orphan	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,RT	NA|74aa|up_6|CP029041.1_958027_958249_-,NA|81aa|up_2|CP029041.1_962408_962651_-,NA|75aa|up_0|CP029041.1_963801_964026_-,NA	NA|224aa|up_9|CP029041.1_954444_955116_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|up_8|CP029041.1_956517_957315_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|up_7|CP029041.1_957402_957765_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|74aa|up_6|CP029041.1_958027_958249_-	NA	NA|600aa|up_5|CP029041.1_958198_959998_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_4|CP029041.1_959997_961710_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_3|CP029041.1_961785_962520_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|81aa|up_2|CP029041.1_962408_962651_-	NA	NA|318aa|up_1|CP029041.1_962732_963686_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|75aa|up_0|CP029041.1_963801_964026_-	NA	NA|349aa|down_0|CP029041.1_966907_967954_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP029041.1_968204_969113_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP029041.1_969122_970562_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP029041.1_970548_971154_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP029041.1_971171_971528_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP029041.1_971718_972030_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP029041.1_972048_972759_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP029041.1_972758_973238_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP029041.1_973234_974284_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP029041.1_974264_975026_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_003073515.1_ASM307351v1	CP029041	Salmonella enterica strain CFSAN051295 chromosome, complete genome	6	1454935-1455010	6	CRISPRCasFinder	no		cas3,PD-DExK,WYL,csa3,DEDDh,DinG,RT	Orphan	GTCTGTGCCGGATGGCGACTAACGT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,RT	NA,NA|67aa|down_3|CP029041.1_1458044_1458245_+,NA|62aa|down_9|CP029041.1_1465154_1465340_-	NA|329aa|up_9|CP029041.1_1445252_1446239_+	PRK03427, PRK03427, cell division protein ZipA; Provisional	NA|672aa|up_8|CP029041.1_1446310_1448326_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|73aa|up_7|CP029041.1_1448327_1448546_+	COG3530, COG3530, Uncharacterized protein conserved in bacteria [Function unknown]	NA|333aa|up_6|CP029041.1_1448542_1449541_-	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137)	NA|309aa|up_5|CP029041.1_1449630_1450557_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|254aa|up_4|CP029041.1_1450618_1451380_-	PRK11528, PRK11528, hypothetical protein; Provisional	NA|278aa|up_3|CP029041.1_1451635_1452469_+	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|419aa|up_2|CP029041.1_1452523_1453780_+	TIGR00889, Putative_nucleoside_transporter_YegT, nucleoside transporter	NA|53aa|up_1|CP029041.1_1453838_1453997_+	TIGR03510, conserved_hypothetical_protein, XapX domain	NA|295aa|up_0|CP029041.1_1454048_1454933_+	PRK09986, PRK09986, LysR family transcriptional regulator	NA|472aa|down_0|CP029041.1_1455799_1457215_+	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|131aa|down_1|CP029041.1_1457268_1457661_-	pfam07037, DUF1323, Putative transcription regulator (DUF1323)	NA|121aa|down_2|CP029041.1_1457662_1458025_-	pfam07037, DUF1323, Putative transcription regulator (DUF1323)	NA|67aa|down_3|CP029041.1_1458044_1458245_+	NA	NA|730aa|down_4|CP029041.1_1458630_1460820_+	cd01948, EAL, EAL domain	NA|401aa|down_5|CP029041.1_1460872_1462075_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|414aa|down_6|CP029041.1_1462417_1463659_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|109aa|down_7|CP029041.1_1463719_1464046_-	pfam10697, DUF2502, Protein of unknown function (DUF2502)	NA|333aa|down_8|CP029041.1_1464159_1465158_-	cd19151, AKR_AKR14A2, Salmonella enterica aldo-keto reductase (AKR) and similar protein	NA|62aa|down_9|CP029041.1_1465154_1465340_-	NA
GCA_003073515.1_ASM307351v1	CP029041	Salmonella enterica strain CFSAN051295 chromosome, complete genome	8	4414131-4414277	8	CRISPRCasFinder	no		cas3,PD-DExK,WYL,csa3,DEDDh,DinG,RT	Orphan	AAACCATCCCGCGAAACATTAACCACTACACATCAGAATTGATTATTTTTT	51	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,RT	NA|68aa|up_3|CP029041.1_4409733_4409937_-,NA|77aa|down_1|CP029041.1_4415649_4415880_-	NA|558aa|up_9|CP029041.1_4404860_4406534_-	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family	NA|148aa|up_8|CP029041.1_4406553_4406997_-	pfam07419, PilM, PilM	NA|450aa|up_7|CP029041.1_4406998_4408348_-	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family	NA|83aa|up_6|CP029041.1_4408614_4408863_-	pfam10387, DUF2442, Protein of unknown function (DUF2442)	NA|81aa|up_5|CP029041.1_4408846_4409089_-	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|183aa|up_4|CP029041.1_4409167_4409716_-	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|68aa|up_3|CP029041.1_4409733_4409937_-	NA	NA|164aa|up_2|CP029041.1_4410009_4410501_-	pfam12101, DUF3577, Protein of unknown function (DUF3577)	NA|670aa|up_1|CP029041.1_4411130_4413140_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|241aa|up_0|CP029041.1_4413153_4413876_-	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family	NA|411aa|down_0|CP029041.1_4414338_4415571_-	pfam13730, HTH_36, Helix-turn-helix domain	NA|77aa|down_1|CP029041.1_4415649_4415880_-	NA	NA|199aa|down_2|CP029041.1_4415879_4416476_-	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|248aa|down_3|CP029041.1_4416560_4417304_-	pfam10979, DUF2786, Protein of unknown function (DUF2786)	NA|85aa|down_4|CP029041.1_4417296_4417551_-	PRK13715, PRK13715, conjugal transfer protein TraR; Provisional	NA|572aa|down_5|CP029041.1_4417543_4419259_-	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein	NA|456aa|down_6|CP029041.1_4419255_4420623_-	TIGR00665, DnaB, replicative DNA helicase	NA|305aa|down_7|CP029041.1_4420619_4421534_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|20aa|down_8|CP029041.1_4421740_4421800_-	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|251aa|down_9|CP029041.1_4422371_4423124_+	cd03397, PAP2_acid_phosphatase, PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases
