assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	1	400421-400551	1	CRISPRCasFinder	no		c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Orphan	CACTTGAATGAACAGGACAGTTTTC	25	0	0	NA	NA	NA	2	2	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA,NA	NA|319aa|up_9|CP023704.1_391953_392910_+	COG3221, PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|264aa|up_8|CP023704.1_393024_393816_+	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|264aa|up_7|CP023704.1_393799_394591_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|267aa|up_6|CP023704.1_394587_395388_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|641aa|up_5|CP023704.1_395497_397420_+	pfam09822, ABC_transp_aux, ABC-type uncharacterized transport system	NA|47aa|up_4|CP023704.1_397691_397832_-	pfam12841, YvrJ, YvrJ protein family	NA|73aa|up_3|CP023704.1_397925_398144_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|73aa|up_2|CP023704.1_398180_398399_-	pfam07872, DUF1659, Protein of unknown function (DUF1659)	NA|300aa|up_1|CP023704.1_398666_399566_-	PRK08293, PRK08293, 3-hydroxyacyl-CoA dehydrogenase	NA|168aa|up_0|CP023704.1_399823_400327_+	pfam07853, DUF1648, Protein of unknown function (DUF1648)	NA|205aa|down_0|CP023704.1_400580_401195_-	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI	NA|275aa|down_1|CP023704.1_401191_402016_-	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|269aa|down_2|CP023704.1_402165_402972_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|174aa|down_3|CP023704.1_402940_403462_-	pfam09512, ThiW, Thiamine-precursor transporter protein (ThiW)	NA|256aa|down_4|CP023704.1_403501_404269_-	cd19366, TenA_C_BhTenA-like, TenA_C proteins similar to Bacillus halodurans TenA	NA|180aa|down_5|CP023704.1_404656_405196_+	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain	NA|206aa|down_6|CP023704.1_405485_406103_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|639aa|down_7|CP023704.1_406520_408437_+	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|74aa|down_8|CP023704.1_408517_408739_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|163aa|down_9|CP023704.1_410256_410745_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	2	441196-441293	2	CRISPRCasFinder	no	RT	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Unclear	CCTTTTGTTGAATGAAAATTAAGCGAGAAC	30	0	0	NA	NA	NA	1	1	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|91aa|up_9|CP023704.1_430320_430593_+,NA|124aa|up_6|CP023704.1_433302_433674_-,NA|62aa|down_5|CP023704.1_451535_451721_+	NA|91aa|up_9|CP023704.1_430320_430593_+	NA	RT|470aa|up_8|CP023704.1_430678_432088_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|115aa|up_7|CP023704.1_432917_433262_-	pfam05076, SUFU, Suppressor of fused protein (SUFU)	NA|124aa|up_6|CP023704.1_433302_433674_-	NA	NA|454aa|up_5|CP023704.1_434020_435382_+	pfam13546, DDE_5, DDE superfamily endonuclease	NA|175aa|up_4|CP023704.1_435385_435910_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|367aa|up_3|CP023704.1_436503_437604_+	TIGR01446, replication_protein, DnaD and phage-associated domain	NA|499aa|up_2|CP023704.1_438330_439827_-	sd00006, TPR, Tetratricopeptide repeat	NA|230aa|up_1|CP023704.1_439902_440592_-	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|172aa|up_0|CP023704.1_440632_441148_-	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]	NA|1228aa|down_0|CP023704.1_442743_446427_-	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|396aa|down_1|CP023704.1_446915_448103_+	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|394aa|down_2|CP023704.1_448462_449644_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|255aa|down_3|CP023704.1_449699_450464_-	pfam03649, UPF0014, Uncharacterized protein family (UPF0014)	NA|252aa|down_4|CP023704.1_450460_451216_-	cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system	NA|62aa|down_5|CP023704.1_451535_451721_+	NA	NA|526aa|down_6|CP023704.1_452014_453592_+	PRK09255, PRK09255, malate synthase; Validated	NA|426aa|down_7|CP023704.1_453660_454938_+	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|581aa|down_8|CP023704.1_455365_457108_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|372aa|down_9|CP023704.1_457602_458718_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	3	458743-458911	3	CRISPRCasFinder	no		c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Orphan	ACATCCGGATTGGTGACTTGACG	23	0	0	NA	NA	NA	2	2	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|62aa|up_4|CP023704.1_451535_451721_+,NA|90aa|down_3|CP023704.1_466209_466479_+	NA|1228aa|up_9|CP023704.1_442743_446427_-	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|396aa|up_8|CP023704.1_446915_448103_+	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|394aa|up_7|CP023704.1_448462_449644_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|255aa|up_6|CP023704.1_449699_450464_-	pfam03649, UPF0014, Uncharacterized protein family (UPF0014)	NA|252aa|up_5|CP023704.1_450460_451216_-	cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system	NA|62aa|up_4|CP023704.1_451535_451721_+	NA	NA|526aa|up_3|CP023704.1_452014_453592_+	PRK09255, PRK09255, malate synthase; Validated	NA|426aa|up_2|CP023704.1_453660_454938_+	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|581aa|up_1|CP023704.1_455365_457108_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|372aa|up_0|CP023704.1_457602_458718_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|157aa|down_0|CP023704.1_459019_459490_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|698aa|down_1|CP023704.1_459544_461638_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|151aa|down_2|CP023704.1_461820_462273_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|90aa|down_3|CP023704.1_466209_466479_+	NA	NA|452aa|down_4|CP023704.1_466479_467835_+	pfam01970, TctA, Tripartite tricarboxylate transporter TctA family	NA|332aa|down_5|CP023704.1_467866_468862_+	TIGR00549, Mevalonate_kinase, mevalonate kinase	NA|333aa|down_6|CP023704.1_468845_469844_+	COG3407, MVD1, Mevalonate pyrophosphate decarboxylase [Lipid metabolism]	NA|369aa|down_7|CP023704.1_469860_470967_+	TIGR01220, phosphomevalonate_kinase, phosphomevalonate kinase, ERG8-type, Gram-positive branch	NA|344aa|down_8|CP023704.1_471116_472148_+	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|104aa|down_9|CP023704.1_472392_472704_-	COG5577, COG5577, Spore coat protein [Cell envelope biogenesis, outer membrane]
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	4	692587-692670	4	CRISPRCasFinder	no		c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Orphan	TTTTCTTCGTGCGATGCTTATTC	23	1	3	692610-692647|692610-692647|692610-692647	CP023704.1_663811-663848|CP023704.1_2833521-2833484|CP023704.1_2833582-2833545	NA	1	1	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA,NA|82aa|down_1|CP023704.1_694697_694943_+	NA|481aa|up_9|CP023704.1_677637_679080_-	TIGR01998, N-acetylglucosamine_and_glucose_PTS, PTS system, N-acetylglucosamine-specific IIBC component	NA|272aa|up_8|CP023704.1_679277_680093_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|162aa|up_7|CP023704.1_680132_680618_-	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|434aa|up_6|CP023704.1_681175_682477_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|463aa|up_5|CP023704.1_682755_684144_+	PRK00485, fumC, fumarate hydratase; Reviewed	NA|430aa|up_4|CP023704.1_684338_685628_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|422aa|up_3|CP023704.1_685783_687049_+	pfam12844, HTH_19, Helix-turn-helix domain	NA|319aa|up_2|CP023704.1_687689_688646_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|400aa|up_1|CP023704.1_688642_689842_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|747aa|up_0|CP023704.1_689838_692079_+	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|507aa|down_0|CP023704.1_692897_694418_+	PRK00074, guaA, GMP synthase; Reviewed	NA|82aa|down_1|CP023704.1_694697_694943_+	NA	NA|68aa|down_2|CP023704.1_695752_695956_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|435aa|down_3|CP023704.1_697463_698768_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|283aa|down_4|CP023704.1_698952_699801_+	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|688aa|down_5|CP023704.1_700104_702168_+	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component	NA|89aa|down_6|CP023704.1_702438_702705_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|572aa|down_7|CP023704.1_702704_704420_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|431aa|down_8|CP023704.1_704700_705993_+	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1	NA|116aa|down_9|CP023704.1_706076_706424_-	pfam11127, DUF2892, Protein of unknown function (DUF2892)
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	5	748217-748315	5	CRISPRCasFinder	no		c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Orphan	TCCTCGAAAAAGCTACTCGCTTTTTCTTCGTGCGATG	37	1	2	748254-748278|748254-748278	CP023704.1_663804-663828|CP023704.1_2833589-2833565	NA	1	1	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|118aa|up_4|CP023704.1_744038_744392_+,NA|120aa|down_1|CP023704.1_750119_750479_+,NA|218aa|down_9|CP023704.1_759749_760403_-	NA|174aa|up_9|CP023704.1_737656_738178_+	pfam14595, Thioredoxin_9, Thioredoxin	NA|275aa|up_8|CP023704.1_738398_739223_+	cd19131, AKR_AKR5C2, Escherichia coli 2,5-diketo-D-gluconic acid reductase A (DkgA/YqhE) and similar proteins	NA|393aa|up_7|CP023704.1_739572_740751_+	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|473aa|up_6|CP023704.1_740918_742337_-	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|310aa|up_5|CP023704.1_742533_743463_+	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|118aa|up_4|CP023704.1_744038_744392_+	NA	NA|212aa|up_3|CP023704.1_744436_745072_+	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]	NA|243aa|up_2|CP023704.1_745194_745923_+	pfam09922, DUF2154, Cell wall-active antibiotics response 4TMS YvqF	NA|348aa|up_1|CP023704.1_745919_746963_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|212aa|up_0|CP023704.1_746955_747591_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|250aa|down_0|CP023704.1_749377_750127_+	cd01948, EAL, EAL domain	NA|120aa|down_1|CP023704.1_750119_750479_+	NA	NA|403aa|down_2|CP023704.1_750548_751757_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|227aa|down_3|CP023704.1_751753_752434_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|406aa|down_4|CP023704.1_752417_753635_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|181aa|down_5|CP023704.1_753930_754473_+	PRK09453, PRK09453, phosphodiesterase; Provisional	NA|388aa|down_6|CP023704.1_755793_756957_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|477aa|down_7|CP023704.1_757577_759008_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|117aa|down_8|CP023704.1_759156_759507_-	PRK05687, fliH, flagellar assembly protein FliH	NA|218aa|down_9|CP023704.1_759749_760403_-	NA
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	6	794598-794691	6	CRISPRCasFinder	no	csa3,cas14j	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Type I-A	CATCGCACGAAGAAAAAGCGATTAGCTTTTTC	32	1	2	794630-794659|794630-794659	CP023704.1_663833-663804|CP023704.1_2833560-2833589	NA	1	1	TypeI-A,TypeV	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|406aa|up_9|CP023704.1_783970_785188_+,NA|308aa|up_6|CP023704.1_787575_788499_+,NA|50aa|up_3|CP023704.1_790967_791117_-,NA|144aa|down_0|CP023704.1_794960_795392_+,NA|214aa|down_5|CP023704.1_799677_800319_+	NA|406aa|up_9|CP023704.1_783970_785188_+	NA	NA|351aa|up_8|CP023704.1_785453_786506_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|134aa|up_7|CP023704.1_786883_787285_+	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|308aa|up_6|CP023704.1_787575_788499_+	NA	NA|213aa|up_5|CP023704.1_788876_789515_-	cd16279, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo	NA|441aa|up_4|CP023704.1_789533_790856_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|50aa|up_3|CP023704.1_790967_791117_-	NA	csa3|115aa|up_2|CP023704.1_791133_791478_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|190aa|up_1|CP023704.1_792441_793011_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|320aa|up_0|CP023704.1_793338_794298_+	cd06286, PBP1_CcpB-like, ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species	NA|144aa|down_0|CP023704.1_794960_795392_+	NA	NA|112aa|down_1|CP023704.1_796705_797041_-	pfam06304, DUF1048, Protein of unknown function (DUF1048)	NA|86aa|down_2|CP023704.1_797518_797776_+	pfam14066, DUF4256, Protein of unknown function (DUF4256)	NA|133aa|down_3|CP023704.1_797793_798192_-	pfam01797, Y1_Tnp, Transposase IS200 like	cas14j|374aa|down_4|CP023704.1_798412_799534_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|214aa|down_5|CP023704.1_799677_800319_+	NA	NA|314aa|down_6|CP023704.1_800401_801343_-	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein	NA|328aa|down_7|CP023704.1_801943_802927_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|414aa|down_8|CP023704.1_803376_804618_+	PRK09528, lacY, galactoside permease; Reviewed	NA|487aa|down_9|CP023704.1_804646_806107_+	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	7	999501-1001136	1	CRT	no		c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Orphan	TTTTTNGCGACGAGACNNTTTCTCGTC	27	10	22	999632-999655|999891-999915|999943-999967|1000047-1000071|1000047-1000071|1000047-1000071|1000047-1000071|1000047-1000071|1000151-1000175|1000151-1000175|1000151-1000175|1000151-1000175|1000151-1000175|1000203-1000226|1000306-1000330|1000306-1000330|1000306-1000330|1000514-1000537|1000721-1000745|1000721-1000745|1000877-1000901|1000877-1000901	CP023704.1_895636-895613|CP023704.1_895636-895612|CP023704.1_895636-895612|CP023704.1_895428-895404|CP023704.1_895688-895664|CP023704.1_895584-895560|CP023704.1_330908-330884|CP023704.1_895480-895456|CP023704.1_895428-895404|CP023704.1_895688-895664|CP023704.1_895584-895560|CP023704.1_330908-330884|CP023704.1_895480-895456|CP023704.1_895636-895613|CP023704.1_895636-895612|CP023704.1_330908-330884|CP023704.1_895480-895456|CP023704.1_895636-895613|CP023704.1_895220-895196|CP023704.1_895324-895300|CP023704.1_822627-822651|CP023704.1_1400732-1400708	NA	31	31	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|192aa|up_9|CP023704.1_986889_987465_+,NA|132aa|up_3|CP023704.1_996083_996479_+,NA|77aa|up_2|CP023704.1_996855_997086_-,NA|68aa|down_6|CP023704.1_1008221_1008425_-,NA|274aa|down_9|CP023704.1_1010396_1011218_+	NA|192aa|up_9|CP023704.1_986889_987465_+	NA	NA|370aa|up_8|CP023704.1_989899_991009_+	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	NA|367aa|up_7|CP023704.1_991229_992330_-	PRK06520, PRK06520, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	NA|386aa|up_6|CP023704.1_992845_994003_+	pfam14199, DUF4317, Domain of unknown function (DUF4317)	NA|78aa|up_5|CP023704.1_994232_994466_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|415aa|up_4|CP023704.1_994535_995780_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|132aa|up_3|CP023704.1_996083_996479_+	NA	NA|77aa|up_2|CP023704.1_996855_997086_-	NA	NA|296aa|up_1|CP023704.1_997387_998275_+	COG1834, COG1834, N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]	NA|302aa|up_0|CP023704.1_998468_999374_+	pfam04204, HTS, Homoserine O-succinyltransferase	NA|361aa|down_0|CP023704.1_1001333_1002416_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_1|CP023704.1_1002449_1003079_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|311aa|down_2|CP023704.1_1003386_1004319_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|418aa|down_3|CP023704.1_1004336_1005590_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|367aa|down_4|CP023704.1_1005586_1006687_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|329aa|down_5|CP023704.1_1007007_1007994_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|68aa|down_6|CP023704.1_1008221_1008425_-	NA	NA|123aa|down_7|CP023704.1_1009322_1009691_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|234aa|down_8|CP023704.1_1009687_1010389_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|274aa|down_9|CP023704.1_1010396_1011218_+	NA
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	8	1043607-1043710	7	CRISPRCasFinder	no		c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Orphan	CCGGTTCATTGAAACAAAATGGGAA	25	0	0	NA	NA	NA	1	1	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|200aa|up_6|CP023704.1_1036732_1037332_+,NA|149aa|up_5|CP023704.1_1037359_1037806_+,NA	NA|808aa|up_9|CP023704.1_1029462_1031886_+	pfam13654, AAA_32, AAA domain	NA|832aa|up_8|CP023704.1_1032342_1034838_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|510aa|up_7|CP023704.1_1034971_1036501_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|200aa|up_6|CP023704.1_1036732_1037332_+	NA	NA|149aa|up_5|CP023704.1_1037359_1037806_+	NA	NA|407aa|up_4|CP023704.1_1038116_1039337_-	pfam10388, YkuI_C, EAL-domain associated signalling protein domain	NA|358aa|up_3|CP023704.1_1039574_1040648_-	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|299aa|up_2|CP023704.1_1040874_1041771_+	TIGR00768, Tetrahydromethanopterin:alpha-L-glutamate_ligase, alpha-L-glutamate ligase, RimK family	NA|310aa|up_1|CP023704.1_1041694_1042624_+	TIGR00768, Tetrahydromethanopterin:alpha-L-glutamate_ligase, alpha-L-glutamate ligase, RimK family	NA|242aa|up_0|CP023704.1_1042877_1043603_+	TIGR00434, Phosphoadenosine_phosphosulfate_reductase, phosophoadenylyl-sulfate reductase (thioredoxin)	NA|613aa|down_0|CP023704.1_1043872_1045711_+	TIGR01931, Sulfite_reductase_flavoprotein_alpha-component, sulfite reductase [NADPH] flavoprotein, alpha-component	NA|574aa|down_1|CP023704.1_1045731_1047453_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|259aa|down_2|CP023704.1_1047610_1048387_+	PRK06136, PRK06136, uroporphyrinogen-III C-methyltransferase	NA|251aa|down_3|CP023704.1_1048401_1049154_+	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|393aa|down_4|CP023704.1_1049233_1050412_+	PRK04149, sat, sulfate adenylyltransferase; Reviewed	NA|204aa|down_5|CP023704.1_1050596_1051208_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|466aa|down_6|CP023704.1_1051999_1053397_+	PRK13570, PRK13570, anthranilate synthase component I; Provisional	NA|196aa|down_7|CP023704.1_1053380_1053968_+	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|341aa|down_8|CP023704.1_1053964_1054987_+	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|261aa|down_9|CP023704.1_1054988_1055771_+	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	10	1402595-1403668	2	CRT	no		c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Orphan	TNAAAATGGTGACGAGAATNGGTCTCGTCGTCAA	34	16	60	1402629-1402646|1402681-1402698|1402681-1402698|1402681-1402698|1402681-1402698|1402681-1402698|1402681-1402698|1402681-1402698|1402681-1402698|1402681-1402698|1402733-1402750|1402785-1402802|1402785-1402802|1402785-1402802|1402837-1402854|1402889-1402906|1402889-1402906|1402889-1402906|1402889-1402906|1402941-1402958|1402941-1402958|1402941-1402958|1402993-1403010|1403045-1403062|1403045-1403062|1403045-1403062|1403045-1403062|1403045-1403062|1403045-1403062|1403045-1403062|1403045-1403062|1403045-1403062|1403097-1403114|1403149-1403166|1403149-1403166|1403149-1403166|1403149-1403166|1403149-1403166|1403149-1403166|1403149-1403166|1403149-1403166|1403149-1403166|1403305-1403322|1403305-1403322|1403305-1403322|1403305-1403322|1403357-1403374|1403357-1403374|1403357-1403374|1403357-1403374|1403357-1403374|1403357-1403374|1403357-1403374|1403357-1403374|1403357-1403374|1403461-1403478|1403565-1403582|1403617-1403634|1403617-1403634|1403617-1403634	CP023704.1_3224434-3224451|CP023704.1_822654-822637|CP023704.1_2005260-2005277|CP023704.1_822498-822481|CP023704.1_1092101-1092084|CP023704.1_1092413-1092396|CP023704.1_2888015-2888032|CP023704.1_2888119-2888136|CP023704.1_2888223-2888240|CP023704.1_2888951-2888968|CP023704.1_1400549-1400566|CP023704.1_631051-631034|CP023704.1_631831-631814|CP023704.1_1402577-1402594|CP023704.1_1400653-1400670|CP023704.1_1400601-1400618|CP023704.1_1401069-1401086|CP023704.1_3318186-3318169|CP023704.1_3320348-3320331|CP023704.1_631051-631034|CP023704.1_631831-631814|CP023704.1_1402577-1402594|CP023704.1_3224434-3224451|CP023704.1_822654-822637|CP023704.1_2005260-2005277|CP023704.1_822498-822481|CP023704.1_1092101-1092084|CP023704.1_1092413-1092396|CP023704.1_2888015-2888032|CP023704.1_2888119-2888136|CP023704.1_2888223-2888240|CP023704.1_2888951-2888968|CP023704.1_1400549-1400566|CP023704.1_822654-822637|CP023704.1_2005260-2005277|CP023704.1_822498-822481|CP023704.1_1092101-1092084|CP023704.1_1092413-1092396|CP023704.1_2888015-2888032|CP023704.1_2888119-2888136|CP023704.1_2888223-2888240|CP023704.1_2888951-2888968|CP023704.1_822654-822637|CP023704.1_1092101-1092084|CP023704.1_1092413-1092396|CP023704.1_2005260-2005277|CP023704.1_822654-822637|CP023704.1_2005260-2005277|CP023704.1_822498-822481|CP023704.1_1092101-1092084|CP023704.1_1092413-1092396|CP023704.1_2888015-2888032|CP023704.1_2888119-2888136|CP023704.1_2888223-2888240|CP023704.1_2888951-2888968|CP023704.1_1400705-1400722|CP023704.1_1400653-1400670|CP023704.1_822654-822637|CP023704.1_1400705-1400722|CP023704.1_2005260-2005277	NA	20	20	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|245aa|up_5|CP023704.1_1396506_1397241_+,NA|135aa|up_1|CP023704.1_1399954_1400359_-,NA|76aa|down_9|CP023704.1_1414970_1415198_+	NA|295aa|up_9|CP023704.1_1392557_1393442_+	pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family	NA|163aa|up_8|CP023704.1_1393636_1394125_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|87aa|up_7|CP023704.1_1394278_1394539_+	pfam02024, Leptin, Leptin	NA|397aa|up_6|CP023704.1_1394921_1396112_-	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|245aa|up_5|CP023704.1_1396506_1397241_+	NA	NA|144aa|up_4|CP023704.1_1397281_1397713_-	pfam09723, Zn-ribbon_8, Zinc ribbon domain	NA|205aa|up_3|CP023704.1_1397812_1398427_-	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|272aa|up_2|CP023704.1_1398959_1399775_+	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]	NA|135aa|up_1|CP023704.1_1399954_1400359_-	NA	NA|388aa|up_0|CP023704.1_1401254_1402418_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|150aa|down_0|CP023704.1_1404039_1404489_+	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional	NA|161aa|down_1|CP023704.1_1404499_1404982_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|459aa|down_2|CP023704.1_1405173_1406550_+	PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome]	NA|214aa|down_3|CP023704.1_1406625_1407267_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|197aa|down_4|CP023704.1_1407573_1408164_-	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD	NA|495aa|down_5|CP023704.1_1408525_1410010_+	cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins	NA|359aa|down_6|CP023704.1_1410883_1411960_+	PRK12595, PRK12595, bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed	NA|372aa|down_7|CP023704.1_1412060_1413176_+	PRK06545, PRK06545, prephenate dehydrogenase; Validated	NA|492aa|down_8|CP023704.1_1413246_1414722_-	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|76aa|down_9|CP023704.1_1414970_1415198_+	NA
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	11	1682654-1682744	9	CRISPRCasFinder	no		c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Orphan	TTTTCTTCGTGCGATGCTTATTCAAGGAAG	30	1	3	1682684-1682714|1682684-1682714|1682684-1682714	CP023704.1_663818-663848|CP023704.1_2833514-2833484|CP023704.1_2833575-2833545	NA	1	1	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|418aa|up_5|CP023704.1_1675255_1676509_+,NA	NA|115aa|up_9|CP023704.1_1672370_1672715_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|176aa|up_8|CP023704.1_1673003_1673531_+	TIGR02227, Inactive_signal_peptidase_IA	NA|296aa|up_7|CP023704.1_1673578_1674466_+	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|261aa|up_6|CP023704.1_1674449_1675232_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|418aa|up_5|CP023704.1_1675255_1676509_+	NA	NA|94aa|up_4|CP023704.1_1676505_1676787_+	COG2257, COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]	NA|388aa|up_3|CP023704.1_1676921_1678085_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|301aa|up_2|CP023704.1_1678142_1679045_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|270aa|up_1|CP023704.1_1679186_1679996_+	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|692aa|up_0|CP023704.1_1680281_1682357_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|299aa|down_0|CP023704.1_1683162_1684059_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|181aa|down_1|CP023704.1_1684077_1684620_+	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|470aa|down_2|CP023704.1_1684659_1686069_+	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|259aa|down_3|CP023704.1_1686146_1686923_+	PRK04158, PRK04158, GTP-sensing pleiotropic transcriptional regulator CodY	NA|134aa|down_4|CP023704.1_1687274_1687676_+	PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|150aa|down_5|CP023704.1_1687672_1688122_+	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|98aa|down_6|CP023704.1_1688196_1688490_+	PRK12728, fliE, flagellar hook-basal body protein FliE; Provisional	NA|533aa|down_7|CP023704.1_1688546_1690145_+	PRK06007, fliF, flagellar basal body M-ring protein FliF	NA|337aa|down_8|CP023704.1_1690157_1691168_+	PRK05686, fliG, flagellar motor switch protein G; Validated	NA|286aa|down_9|CP023704.1_1691064_1691922_+	TIGR03825, FliH_bacil, flagellar assembly protein FliH
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	12	1825118-1825212	10	CRISPRCasFinder	no	PrimPol	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Unclear	GCATCGCACGAAGAAAAAGCGATTAGCTTTTTC	33	1	2	1825151-1825179|1825151-1825179	CP023704.1_663833-663805|CP023704.1_2833560-2833588	NA	1	1	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA,NA	NA|690aa|up_9|CP023704.1_1811598_1813668_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|350aa|up_8|CP023704.1_1814303_1815353_+	PRK09354, recA, recombinase A; Provisional	NA|521aa|up_7|CP023704.1_1815765_1817328_+	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|266aa|up_6|CP023704.1_1817513_1818311_+	pfam13277, YmdB, YmdB-like protein	NA|87aa|up_5|CP023704.1_1818463_1818724_+	COG2359, SpoVS, Stage V sporulation protein SpoVS [Function unknown]	NA|517aa|up_4|CP023704.1_1819226_1820777_+	PRK14327, PRK14327, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|147aa|up_3|CP023704.1_1820781_1821222_+	COG4550, COG4550, Predicted membrane protein [Function unknown]	NA|259aa|up_2|CP023704.1_1821315_1822092_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|180aa|up_1|CP023704.1_1822274_1822814_+	pfam10628, CotE, Outer spore coat protein E (CotE)	NA|522aa|up_0|CP023704.1_1823423_1824989_+	cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)	NA|891aa|down_0|CP023704.1_1825620_1828293_+	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|665aa|down_1|CP023704.1_1828319_1830314_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|317aa|down_2|CP023704.1_1830590_1831541_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|75aa|down_3|CP023704.1_1831569_1831794_+	PRK00395, hfq, RNA-binding protein Hfq; Provisional	NA|310aa|down_4|CP023704.1_1832271_1833201_+	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K	NA|422aa|down_5|CP023704.1_1833393_1834659_+	TIGR03156, GTP_HflX, GTP-binding protein HflX	NA|424aa|down_6|CP023704.1_1834660_1835932_+	pfam06838, Met_gamma_lyase, Methionine gamma-lyase	NA|134aa|down_7|CP023704.1_1836176_1836578_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|446aa|down_8|CP023704.1_1836672_1838010_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|207aa|down_9|CP023704.1_1838063_1838684_-	PRK00215, PRK00215, transcriptional repressor LexA
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	13	2125129-2125222	11	CRISPRCasFinder	no		c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Orphan	CATCGCACGAAGAAAAAGCGAGTAGCTTTTTC	32	1	2	2125161-2125190|2125161-2125190	CP023704.1_663833-663804|CP023704.1_2833560-2833589	NA	1	1	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|66aa|up_7|CP023704.1_2118431_2118629_+,NA|199aa|up_6|CP023704.1_2118661_2119258_+,NA|63aa|up_2|CP023704.1_2123075_2123264_+,NA|74aa|down_0|CP023704.1_2125507_2125729_-	NA|331aa|up_9|CP023704.1_2116139_2117132_-	cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases	NA|197aa|up_8|CP023704.1_2117208_2117799_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|66aa|up_7|CP023704.1_2118431_2118629_+	NA	NA|199aa|up_6|CP023704.1_2118661_2119258_+	NA	NA|432aa|up_5|CP023704.1_2119586_2120882_-	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|256aa|up_4|CP023704.1_2121231_2121999_-	TIGR02890, conserved_hypothetical_protein, regulatory protein, yteA family	NA|270aa|up_3|CP023704.1_2122176_2122986_+	COG1408, COG1408, Predicted phosphohydrolases [General function prediction only]	NA|63aa|up_2|CP023704.1_2123075_2123264_+	NA	NA|260aa|up_1|CP023704.1_2123358_2124138_-	pfam10710, DUF2512, Protein of unknown function (DUF2512)	NA|178aa|up_0|CP023704.1_2124402_2124936_+	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase	NA|74aa|down_0|CP023704.1_2125507_2125729_-	NA	NA|415aa|down_1|CP023704.1_2125776_2127021_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|378aa|down_2|CP023704.1_2127062_2128196_-	PRK07671, PRK07671, bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA|84aa|down_3|CP023704.1_2128212_2128464_-	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|569aa|down_4|CP023704.1_2128608_2130315_+	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|233aa|down_5|CP023704.1_2130375_2131074_-	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|156aa|down_6|CP023704.1_2131086_2131554_-	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|213aa|down_7|CP023704.1_2131717_2132356_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|302aa|down_8|CP023704.1_2132799_2133705_-	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase)	NA|129aa|down_9|CP023704.1_2133774_2134161_-	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	15	2147721-2147814	13	CRISPRCasFinder	no		c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Orphan	GTTAATGTATGGGTATTTTAAGCGGAAACC	30	0	0	NA	NA	NA	1	1	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|70aa|up_6|CP023704.1_2140961_2141171_-,NA|74aa|up_3|CP023704.1_2143390_2143612_+,NA|234aa|down_7|CP023704.1_2154929_2155631_-	NA|118aa|up_9|CP023704.1_2138626_2138980_-	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|134aa|up_8|CP023704.1_2138983_2139385_-	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|482aa|up_7|CP023704.1_2139404_2140850_-	cd01171, YXKO-related, B	NA|70aa|up_6|CP023704.1_2140961_2141171_-	NA	NA|102aa|up_5|CP023704.1_2141275_2141581_-	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|424aa|up_4|CP023704.1_2141899_2143171_+	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|74aa|up_3|CP023704.1_2143390_2143612_+	NA	NA|453aa|up_2|CP023704.1_2143973_2145332_+	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|207aa|up_1|CP023704.1_2145491_2146112_+	pfam01810, LysE, LysE type translocator	NA|455aa|up_0|CP023704.1_2146174_2147539_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|67aa|down_0|CP023704.1_2148421_2148622_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|67aa|down_1|CP023704.1_2148789_2148990_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|178aa|down_2|CP023704.1_2149354_2149888_-	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|281aa|down_3|CP023704.1_2149972_2150815_-	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku	NA|617aa|down_4|CP023704.1_2151261_2153112_+	PRK09633, ligD, DNA ligase D	NA|333aa|down_5|CP023704.1_2153133_2154132_-	PRK00450, dapF, diaminopimelate epimerase; Provisional	NA|196aa|down_6|CP023704.1_2154246_2154834_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|234aa|down_7|CP023704.1_2154929_2155631_-	NA	NA|190aa|down_8|CP023704.1_2156028_2156598_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|158aa|down_9|CP023704.1_2156900_2157374_+	cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	16	2229578-2229659	14	CRISPRCasFinder	no	csa3	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Type I-A	ATATTCAAACAATTATTTGAATAA	24	0	0	NA	NA	NA	1	1	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|65aa|up_9|CP023704.1_2218817_2219012_+,NA|187aa|down_6|CP023704.1_2237194_2237755_-,NA|65aa|down_9|CP023704.1_2241307_2241502_-	NA|65aa|up_9|CP023704.1_2218817_2219012_+	NA	NA|548aa|up_8|CP023704.1_2219393_2221037_-	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase	NA|430aa|up_7|CP023704.1_2221333_2222623_-	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|139aa|up_6|CP023704.1_2222736_2223153_-	cd07254, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	csa3|109aa|up_5|CP023704.1_2223214_2223541_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|318aa|up_4|CP023704.1_2224009_2224963_+	COG0798, ACR3, Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]	NA|366aa|up_3|CP023704.1_2225177_2226275_-	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism]	NA|170aa|up_2|CP023704.1_2226217_2226727_-	pfam04234, CopC, CopC domain	NA|726aa|up_1|CP023704.1_2227034_2229212_-	cd07545, P-type_ATPase_Cd-like, P-type heavy metal-transporting ATPase, similar to Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase	csa3|122aa|up_0|CP023704.1_2229198_2229564_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|205aa|down_0|CP023704.1_2229693_2230308_-	COG4300, CadD, Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]	NA|527aa|down_1|CP023704.1_2230867_2232448_-	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]	NA|274aa|down_2|CP023704.1_2232664_2233486_-	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase	NA|438aa|down_3|CP023704.1_2233744_2235058_+	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1	NA|78aa|down_4|CP023704.1_2235255_2235489_-	pfam11666, DUF2933, Protein of unknown function (DUF2933)	NA|454aa|down_5|CP023704.1_2235863_2237225_+	pfam13546, DDE_5, DDE superfamily endonuclease	NA|187aa|down_6|CP023704.1_2237194_2237755_-	NA	NA|524aa|down_7|CP023704.1_2239295_2240867_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|118aa|down_8|CP023704.1_2240957_2241311_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|65aa|down_9|CP023704.1_2241307_2241502_-	NA
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	17	2612654-2612742	15	CRISPRCasFinder	no		c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Orphan	AAAACTACTTCCTTTTGTGGAATGGCGGC	29	0	0	NA	NA	NA	1	1	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA,NA|78aa|down_2|CP023704.1_2616958_2617192_+	NA|754aa|up_9|CP023704.1_2603193_2605455_-	PRK13024, PRK13024, bifunctional preprotein translocase subunit SecD/SecF; Reviewed	NA|100aa|up_8|CP023704.1_2605581_2605881_-	pfam13797, Post_transc_reg, Post-transcriptional regulator	NA|517aa|up_7|CP023704.1_2606013_2607564_+	TIGR02900, Stage_V_sporulation_protein_B, stage V sporulation protein B	NA|213aa|up_6|CP023704.1_2607637_2608276_-	COG2323, COG2323, Predicted membrane protein [Function unknown]	NA|131aa|up_5|CP023704.1_2608437_2608830_+	TIGR04086, hypothetical_protein, putative membrane protein, TIGR04086 family	NA|83aa|up_4|CP023704.1_2608924_2609173_-	PRK05585, yajC, preprotein translocase subunit YajC; Validated	NA|380aa|up_3|CP023704.1_2609218_2610358_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|343aa|up_2|CP023704.1_2610377_2611406_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|69aa|up_1|CP023704.1_2611422_2611629_-	pfam11146, DUF2905, Protein of unknown function (DUF2905)	NA|334aa|up_0|CP023704.1_2611625_2612627_-	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|201aa|down_0|CP023704.1_2612900_2613503_-	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|869aa|down_1|CP023704.1_2613627_2616234_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|78aa|down_2|CP023704.1_2616958_2617192_+	NA	NA|281aa|down_3|CP023704.1_2617281_2618124_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|453aa|down_4|CP023704.1_2618076_2619435_+	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|97aa|down_5|CP023704.1_2619616_2619907_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|347aa|down_6|CP023704.1_2620110_2621151_-	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like	NA|249aa|down_7|CP023704.1_2621559_2622306_-	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|384aa|down_8|CP023704.1_2622482_2623634_-	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase	NA|172aa|down_9|CP023704.1_2623958_2624474_-	pfam08955, BofC_C, BofC C-terminal domain
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	18	2677651-2677725	16	CRISPRCasFinder	no	c2c10_CAS-V-U3	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Type V-U3	AGGAAAAATTATACGAAATGATTT	24	0	0	NA	NA	NA	1	1	TypeV-U3	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|178aa|up_9|CP023704.1_2662031_2662565_+,NA|623aa|up_8|CP023704.1_2662548_2664417_+,NA|63aa|up_6|CP023704.1_2667752_2667941_-,NA|75aa|up_0|CP023704.1_2677294_2677519_-,NA|64aa|down_0|CP023704.1_2677980_2678172_+	NA|178aa|up_9|CP023704.1_2662031_2662565_+	NA	NA|623aa|up_8|CP023704.1_2662548_2664417_+	NA	c2c10_CAS-V-U3|372aa|up_7|CP023704.1_2664666_2665782_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|63aa|up_6|CP023704.1_2667752_2667941_-	NA	NA|133aa|up_5|CP023704.1_2667948_2668347_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|434aa|up_4|CP023704.1_2668622_2669924_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|502aa|up_3|CP023704.1_2670225_2671731_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|425aa|up_2|CP023704.1_2672072_2673347_-	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|883aa|up_1|CP023704.1_2674653_2677302_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|75aa|up_0|CP023704.1_2677294_2677519_-	NA	NA|64aa|down_0|CP023704.1_2677980_2678172_+	NA	NA|491aa|down_1|CP023704.1_2678534_2680007_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|215aa|down_2|CP023704.1_2680369_2681014_-	PRK06718, PRK06718, NAD(P)-binding protein	NA|328aa|down_3|CP023704.1_2681256_2682240_-	TIGR02904, hypothetical_conserved_protein, spore coat protein YsxE	NA|550aa|down_4|CP023704.1_2682373_2684023_-	TIGR02907, Stage_VI_sporulation_protein_D, stage VI sporulation protein D	NA|432aa|down_5|CP023704.1_2684433_2685729_-	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|328aa|down_6|CP023704.1_2685783_2686767_-	PRK09283, PRK09283, porphobilinogen synthase	NA|308aa|down_7|CP023704.1_2686980_2687904_-	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme	NA|310aa|down_8|CP023704.1_2687911_2688841_-	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|278aa|down_9|CP023704.1_2688929_2689763_-	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	19	2895783-2895891	17	CRISPRCasFinder	no		c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Orphan	GGTGGTAAAAAAATTAGATTTTTATCAATGATTCGAAA	38	0	0	NA	NA	NA	1	1	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|92aa|up_8|CP023704.1_2887952_2888228_+,NA|170aa|up_4|CP023704.1_2891667_2892177_-,NA|320aa|down_4|CP023704.1_2899233_2900193_-	NA|956aa|up_9|CP023704.1_2884894_2887762_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|92aa|up_8|CP023704.1_2887952_2888228_+	NA	NA|203aa|up_7|CP023704.1_2889683_2890292_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|270aa|up_6|CP023704.1_2890296_2891106_-	pfam07285, DUF1444, Protein of unknown function (DUF1444)	NA|105aa|up_5|CP023704.1_2891138_2891453_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|170aa|up_4|CP023704.1_2891667_2892177_-	NA	NA|176aa|up_3|CP023704.1_2892179_2892707_-	PRK03114, PRK03114, DUF84 family protein	NA|359aa|up_2|CP023704.1_2892955_2894032_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|105aa|up_1|CP023704.1_2894366_2894681_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|282aa|up_0|CP023704.1_2894845_2895691_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|291aa|down_0|CP023704.1_2895892_2896765_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|217aa|down_1|CP023704.1_2897032_2897683_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|93aa|down_2|CP023704.1_2897898_2898177_+	pfam14165, YtzH, YtzH-like protein	NA|258aa|down_3|CP023704.1_2898255_2899029_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|320aa|down_4|CP023704.1_2899233_2900193_-	NA	NA|187aa|down_5|CP023704.1_2900296_2900857_-	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase	NA|289aa|down_6|CP023704.1_2901013_2901880_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|74aa|down_7|CP023704.1_2902753_2902975_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|239aa|down_8|CP023704.1_2903052_2903769_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|86aa|down_9|CP023704.1_2904196_2904454_+	pfam00261, Tropomyosin, Tropomyosin
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	20	2924788-2924888	18	CRISPRCasFinder	no		c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Orphan	GGAATTACTATTTAAAGAAACACAATGAGT	30	0	0	NA	NA	NA	1	1	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|99aa|up_8|CP023704.1_2915320_2915617_-,NA|109aa|down_8|CP023704.1_2933368_2933695_-	NA|195aa|up_9|CP023704.1_2914656_2915241_-	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]	NA|99aa|up_8|CP023704.1_2915320_2915617_-	NA	NA|396aa|up_7|CP023704.1_2915662_2916850_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|89aa|up_6|CP023704.1_2917298_2917565_-	pfam10732, DUF2524, Protein of unknown function (DUF2524)	NA|322aa|up_5|CP023704.1_2917900_2918866_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|191aa|up_4|CP023704.1_2918862_2919435_+	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|334aa|up_3|CP023704.1_2919643_2920645_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|357aa|up_2|CP023704.1_2920886_2921957_-	pfam10776, DUF2600, Protein of unknown function (DUF2600)	NA|175aa|up_1|CP023704.1_2922159_2922684_+	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|401aa|up_0|CP023704.1_2922728_2923931_-	PRK13289, PRK13289, NO-inducible flavohemoprotein	NA|399aa|down_0|CP023704.1_2925088_2926285_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|529aa|down_1|CP023704.1_2926957_2928544_+	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase	NA|123aa|down_2|CP023704.1_2928976_2929345_-	pfam08000, bPH_1, Bacterial PH domain	NA|81aa|down_3|CP023704.1_2929507_2929750_-	pfam10763, DUF2584, Protein of unknown function (DUF2584)	NA|335aa|down_4|CP023704.1_2930019_2931024_+	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|260aa|down_5|CP023704.1_2931201_2931981_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|269aa|down_6|CP023704.1_2931958_2932765_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|158aa|down_7|CP023704.1_2932848_2933322_-	TIGR02705, conserved_hypothetical_protein, nucleoside triphosphatase YtkD	NA|109aa|down_8|CP023704.1_2933368_2933695_-	NA	NA|359aa|down_9|CP023704.1_2933891_2934968_+	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	21	2980315-2980405	19	CRISPRCasFinder	no		c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Orphan	ACTTTCTATCTAAAGAAAAGCAAAT	25	0	0	NA	NA	NA	1	1	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|61aa|up_7|CP023704.1_2970245_2970428_-,NA|86aa|up_1|CP023704.1_2977641_2977899_-,NA	NA|230aa|up_9|CP023704.1_2968426_2969116_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|236aa|up_8|CP023704.1_2969344_2970052_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|61aa|up_7|CP023704.1_2970245_2970428_-	NA	NA|196aa|up_6|CP023704.1_2970451_2971039_-	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|470aa|up_5|CP023704.1_2971255_2972665_-	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|367aa|up_4|CP023704.1_2972786_2973887_-	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional	NA|516aa|up_3|CP023704.1_2973939_2975487_-	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated	NA|322aa|up_2|CP023704.1_2976087_2977053_-	COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only]	NA|86aa|up_1|CP023704.1_2977641_2977899_-	NA	NA|566aa|up_0|CP023704.1_2978117_2979815_+	PRK07710, PRK07710, acetolactate synthase large subunit	NA|344aa|down_0|CP023704.1_2980501_2981533_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|346aa|down_1|CP023704.1_2981638_2982676_+	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|454aa|down_2|CP023704.1_2982856_2984218_-	PRK05313, PRK05313, hypothetical protein; Provisional	NA|91aa|down_3|CP023704.1_2984245_2984518_-	PRK00194, PRK00194, ACT domain-containing protein	NA|939aa|down_4|CP023704.1_2984967_2987784_+	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|217aa|down_5|CP023704.1_2987805_2988456_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|222aa|down_6|CP023704.1_2988468_2989134_+	PRK09496, trkA, Trk system potassium transporter TrkA	NA|67aa|down_7|CP023704.1_2989809_2990010_-	pfam04328, Sel_put, Selenoprotein, putative	NA|489aa|down_8|CP023704.1_2991256_2992723_-	pfam13586, DDE_Tnp_1_2, Transposase DDE domain	NA|77aa|down_9|CP023704.1_2993896_2994127_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	22	3104773-3104865	20	CRISPRCasFinder	no	c2c9_V-U4	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Type V-U4	CCCGATACGTTCATTGTTGAATTTC	25	0	0	NA	NA	NA	1	1	TypeV-U4	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|93aa|up_8|CP023704.1_3096903_3097182_+,NA|238aa|down_4|CP023704.1_3108018_3108732_-	NA|795aa|up_9|CP023704.1_3093750_3096135_-	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]	NA|93aa|up_8|CP023704.1_3096903_3097182_+	NA	NA|113aa|up_7|CP023704.1_3097211_3097550_+	pfam07875, Coat_F, Coat F domain	NA|372aa|up_6|CP023704.1_3097818_3098934_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|85aa|up_5|CP023704.1_3099104_3099359_+	pfam07293, DUF1450, Protein of unknown function (DUF1450)	NA|151aa|up_4|CP023704.1_3099422_3099875_-	pfam17370, DUF5392, Family of unknown function (DUF5392)	NA|332aa|up_3|CP023704.1_3100139_3101135_-	COG1277, NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]	NA|322aa|up_2|CP023704.1_3101148_3102114_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|388aa|up_1|CP023704.1_3102116_3103280_-	COG1470, COG1470, Predicted membrane protein [Function unknown]	NA|194aa|up_0|CP023704.1_3103504_3104086_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|248aa|down_0|CP023704.1_3104957_3105701_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|220aa|down_1|CP023704.1_3105715_3106375_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|262aa|down_2|CP023704.1_3106527_3107313_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|79aa|down_3|CP023704.1_3107594_3107831_-	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|238aa|down_4|CP023704.1_3108018_3108732_-	NA	NA|196aa|down_5|CP023704.1_3109219_3109807_-	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase	NA|142aa|down_6|CP023704.1_3109823_3110249_-	COG2087, CobU, Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]	NA|264aa|down_7|CP023704.1_3110354_3111146_-	PRK00235, cobS, cobalamin synthase; Reviewed	NA|195aa|down_8|CP023704.1_3111212_3111797_-	pfam02283, CobU, Cobinamide kinase / cobinamide phosphate guanyltransferase	c2c9_V-U4|371aa|down_9|CP023704.1_3112061_3113174_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	23	3119217-3119311	21	CRISPRCasFinder	no	c2c9_V-U4	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Type V-U4	TCTATTTTTTAGACCTTTTTTCAG	24	0	0	NA	NA	NA	1	1	TypeV-U4	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA,NA|114aa|down_3|CP023704.1_3123276_3123618_-,NA|118aa|down_4|CP023704.1_3124201_3124555_+,NA|615aa|down_7|CP023704.1_3125328_3127173_+,NA|67aa|down_8|CP023704.1_3127165_3127366_-	NA|142aa|up_9|CP023704.1_3109823_3110249_-	COG2087, CobU, Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]	NA|264aa|up_8|CP023704.1_3110354_3111146_-	PRK00235, cobS, cobalamin synthase; Reviewed	NA|195aa|up_7|CP023704.1_3111212_3111797_-	pfam02283, CobU, Cobinamide kinase / cobinamide phosphate guanyltransferase	c2c9_V-U4|371aa|up_6|CP023704.1_3112061_3113174_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|52aa|up_5|CP023704.1_3113267_3113423_+	pfam12651, RHH_3, Ribbon-helix-helix domain	NA|325aa|up_4|CP023704.1_3113457_3114432_-	TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase	NA|328aa|up_3|CP023704.1_3114373_3115357_-	PRK01209, cobD, cobalamin biosynthesis protein	NA|493aa|up_2|CP023704.1_3115353_3116832_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|353aa|up_1|CP023704.1_3116828_3117887_-	pfam01032, FecCD, FecCD transport family	NA|322aa|up_0|CP023704.1_3117852_3118818_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|110aa|down_0|CP023704.1_3119339_3119669_+	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|317aa|down_1|CP023704.1_3119775_3120726_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|428aa|down_2|CP023704.1_3121157_3122441_-	sd00006, TPR, Tetratricopeptide repeat	NA|114aa|down_3|CP023704.1_3123276_3123618_-	NA	NA|118aa|down_4|CP023704.1_3124201_3124555_+	NA	NA|132aa|down_5|CP023704.1_3124655_3125051_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|93aa|down_6|CP023704.1_3125057_3125336_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|615aa|down_7|CP023704.1_3125328_3127173_+	NA	NA|67aa|down_8|CP023704.1_3127165_3127366_-	NA	NA|159aa|down_9|CP023704.1_3127456_3127933_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	24	3182438-3183266	3,1,22	CRT,PILER-CR,CRISPRCasFinder	no	csx1,csx20,csm3gr7,csx19,cas10	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Type III-B,Type III-A,Type III-C,Type III-D	GTTTCAATTCCTCATAGGTAAGAT,GTTTCAATTCCTCATAGGTAAGATATAAAC,GTTTCAATTCCTCATAGGTAAGATATAAAC	24,30,30	0	0	NA	NA	NA:NA:NA	12,11,11	12	TypeIII-B,TypeIII-A,TypeIII-C,TypeIII-D	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|147aa|up_8|CP023704.1_3172559_3173000_-,NA|152aa|up_6|CP023704.1_3174206_3174662_-,csx20|131aa|down_1|CP023704.1_3184853_3185246_-,csx20|131aa|down_2|CP023704.1_3185527_3185920_-,csx19|136aa|down_5|CP023704.1_3189393_3189801_-,cas10|247aa|down_8|CP023704.1_3193333_3194074_-	NA|153aa|up_9|CP023704.1_3171906_3172365_-	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|147aa|up_8|CP023704.1_3172559_3173000_-	NA	NA|254aa|up_7|CP023704.1_3173146_3173908_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|152aa|up_6|CP023704.1_3174206_3174662_-	NA	NA|224aa|up_5|CP023704.1_3175122_3175794_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|334aa|up_4|CP023704.1_3175795_3176797_+	cd16948, HATPase_BceS-YxdK-YvcQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis BceS, YxdK, and Bacillus thuringiensis YvcQ	NA|256aa|up_3|CP023704.1_3177031_3177799_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|659aa|up_2|CP023704.1_3177791_3179768_+	pfam02687, FtsX, FtsX-like permease family	NA|256aa|up_1|CP023704.1_3180143_3180911_+	pfam17200, sCache_2, Single Cache domain 2	NA|321aa|up_0|CP023704.1_3180928_3181891_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	csx1|420aa|down_0|CP023704.1_3183524_3184784_-	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family	csx20|131aa|down_1|CP023704.1_3184853_3185246_-	NA	csx20|131aa|down_2|CP023704.1_3185527_3185920_-	NA	csx1|463aa|down_3|CP023704.1_3185940_3187329_-	TIGR02221, CRISPR-associated_protein_Csx1_2, CRISPR-associated protein, TM1812 family	csm3gr7|605aa|down_4|CP023704.1_3187558_3189373_-	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csx19|136aa|down_5|CP023704.1_3189393_3189801_-	NA	csm3gr7|440aa|down_6|CP023704.1_3189802_3191122_-	pfam03787, RAMPs, RAMP superfamily	csm3gr7|754aa|down_7|CP023704.1_3191078_3193340_-	cd09700, Csx10, CRISPR/Cas system-associated RAMP superfamily protein Csx10	cas10|247aa|down_8|CP023704.1_3193333_3194074_-	NA	NA|562aa|down_9|CP023704.1_3194212_3195898_+	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	25	3204142-3204236	23	CRISPRCasFinder	no	csx20,csx1,csm3gr7,csx19,cas10,cas4,cas3,cas5,cas7,cas8b1,cas6	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Type III-D,Type III-B,Type III-C,Type I-B,Type III-A	AGTTTCAATTCCTCATAGGTAAGATATA	28	0	0	NA	NA	NA	1	1	TypeIII-D,TypeIII-B,TypeIII-C,TypeI-B,TypeIII-A	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	cas10|247aa|up_7|CP023704.1_3193333_3194074_-,cas10|225aa|up_5|CP023704.1_3196031_3196706_-,NA|65aa|up_2|CP023704.1_3198740_3198935_-,cas10|125aa|up_1|CP023704.1_3198990_3199365_-,NA|168aa|down_9|CP023704.1_3220234_3220738_-	csm3gr7|440aa|up_9|CP023704.1_3189802_3191122_-	pfam03787, RAMPs, RAMP superfamily	csm3gr7|754aa|up_8|CP023704.1_3191078_3193340_-	cd09700, Csx10, CRISPR/Cas system-associated RAMP superfamily protein Csx10	cas10|247aa|up_7|CP023704.1_3193333_3194074_-	NA	NA|562aa|up_6|CP023704.1_3194212_3195898_+	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	cas10|225aa|up_5|CP023704.1_3196031_3196706_-	NA	NA|524aa|up_4|CP023704.1_3196728_3198300_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|118aa|up_3|CP023704.1_3198390_3198744_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|65aa|up_2|CP023704.1_3198740_3198935_-	NA	cas10|125aa|up_1|CP023704.1_3198990_3199365_-	NA	NA|569aa|up_0|CP023704.1_3201173_3202880_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	cas4|103aa|down_0|CP023704.1_3204630_3204939_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|792aa|down_1|CP023704.1_3205200_3207576_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|261aa|down_2|CP023704.1_3207572_3208355_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|319aa|down_3|CP023704.1_3208368_3209325_-	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI	cas8b1|600aa|down_4|CP023704.1_3209326_3211126_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas6|249aa|down_5|CP023704.1_3211944_3212691_-	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|638aa|down_6|CP023704.1_3215122_3217036_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|479aa|down_7|CP023704.1_3217269_3218706_-	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|452aa|down_8|CP023704.1_3218857_3220213_-	PRK09592, celD, PTS cellobiose transporter subunit IIC	NA|168aa|down_9|CP023704.1_3220234_3220738_-	NA
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	26	3213079-3213166	24	CRISPRCasFinder	no	cas10,cas4,cas3,cas5,cas7,cas8b1,cas6	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Type III-D,Type III-B,Type III-C,Type I-B,Type III-A	TCCTCATAGGTAAGATAGAAATATT	25	0	0	NA	NA	NA	1	1	TypeIII-D,TypeIII-B,TypeIII-C,TypeI-B,TypeIII-A	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|65aa|up_8|CP023704.1_3198740_3198935_-,cas10|125aa|up_7|CP023704.1_3198990_3199365_-,NA|168aa|down_3|CP023704.1_3220234_3220738_-	NA|118aa|up_9|CP023704.1_3198390_3198744_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|65aa|up_8|CP023704.1_3198740_3198935_-	NA	cas10|125aa|up_7|CP023704.1_3198990_3199365_-	NA	NA|569aa|up_6|CP023704.1_3201173_3202880_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	cas4|103aa|up_5|CP023704.1_3204630_3204939_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|792aa|up_4|CP023704.1_3205200_3207576_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|261aa|up_3|CP023704.1_3207572_3208355_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|319aa|up_2|CP023704.1_3208368_3209325_-	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI	cas8b1|600aa|up_1|CP023704.1_3209326_3211126_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas6|249aa|up_0|CP023704.1_3211944_3212691_-	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|638aa|down_0|CP023704.1_3215122_3217036_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|479aa|down_1|CP023704.1_3217269_3218706_-	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|452aa|down_2|CP023704.1_3218857_3220213_-	PRK09592, celD, PTS cellobiose transporter subunit IIC	NA|168aa|down_3|CP023704.1_3220234_3220738_-	NA	NA|108aa|down_4|CP023704.1_3221085_3221409_-	PRK09590, celB, PTS cellobiose transporter subunit IIB	NA|113aa|down_5|CP023704.1_3221573_3221912_-	COG1447, CelC, Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]	NA|471aa|down_6|CP023704.1_3222716_3224129_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|281aa|down_7|CP023704.1_3225815_3226658_+	cd19132, AKR_AKR5D1_E1, AKR5D and AKR5E families of aldo-keto reductase (AKR)	NA|663aa|down_8|CP023704.1_3227245_3229234_-	pfam02810, SEC-C, SEC-C motif	NA|156aa|down_9|CP023704.1_3230390_3230858_-	pfam01668, SmpB, SmpB protein
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	27	3232733-3232830	25	CRISPRCasFinder	no	c2c10_CAS-V-U3,cas14j	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Unclear	TTGGACCGTACCTAAATTGATTCCTAC	27	0	0	NA	NA	NA	1	1	TypeV	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|168aa|up_7|CP023704.1_3220234_3220738_-,NA	NA|479aa|up_9|CP023704.1_3217269_3218706_-	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|452aa|up_8|CP023704.1_3218857_3220213_-	PRK09592, celD, PTS cellobiose transporter subunit IIC	NA|168aa|up_7|CP023704.1_3220234_3220738_-	NA	NA|108aa|up_6|CP023704.1_3221085_3221409_-	PRK09590, celB, PTS cellobiose transporter subunit IIB	NA|113aa|up_5|CP023704.1_3221573_3221912_-	COG1447, CelC, Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]	NA|471aa|up_4|CP023704.1_3222716_3224129_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|281aa|up_3|CP023704.1_3225815_3226658_+	cd19132, AKR_AKR5D1_E1, AKR5D and AKR5E families of aldo-keto reductase (AKR)	NA|663aa|up_2|CP023704.1_3227245_3229234_-	pfam02810, SEC-C, SEC-C motif	NA|156aa|up_1|CP023704.1_3230390_3230858_-	pfam01668, SmpB, SmpB protein	NA|453aa|up_0|CP023704.1_3231144_3232503_-	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|250aa|down_0|CP023704.1_3235160_3235910_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|down_1|CP023704.1_3236122_3236356_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|535aa|down_2|CP023704.1_3236631_3238236_-	COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]	c2c10_CAS-V-U3|372aa|down_3|CP023704.1_3238603_3239719_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|202aa|down_4|CP023704.1_3240593_3241199_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|537aa|down_5|CP023704.1_3241240_3242851_-	cd07399, MPP_YvnB, Bacillus subtilis YvnB and related proteins, metallophosphatase domain	NA|78aa|down_6|CP023704.1_3242810_3243044_-	cd07399, MPP_YvnB, Bacillus subtilis YvnB and related proteins, metallophosphatase domain	cas14j|368aa|down_7|CP023704.1_3243164_3244268_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|47aa|down_8|CP023704.1_3246067_3246208_-	pfam09501, Bac_small_YrzI, Probable sporulation protein (Bac_small_yrzI)	NA|63aa|down_9|CP023704.1_3246323_3246512_-	pfam09501, Bac_small_YrzI, Probable sporulation protein (Bac_small_yrzI)
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	28	3420391-3420482	26	CRISPRCasFinder	no	c2c10_CAS-V-U3	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Type V-U3	GGATTGGTCTTCAGTCTGTGAATGGC	26	0	0	NA	NA	NA	1	1	TypeV-U3	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA,NA|112aa|down_0|CP023704.1_3420706_3421042_-,NA|91aa|down_5|CP023704.1_3425381_3425654_+	NA|259aa|up_9|CP023704.1_3410062_3410839_-	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|326aa|up_8|CP023704.1_3410995_3411973_-	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites	NA|377aa|up_7|CP023704.1_3412216_3413347_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|384aa|up_6|CP023704.1_3413468_3414620_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|381aa|up_5|CP023704.1_3414654_3415797_-	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	NA|261aa|up_4|CP023704.1_3416003_3416786_-	PRK06127, PRK06127, enoyl-CoA hydratase; Provisional	NA|260aa|up_3|CP023704.1_3416911_3417691_-	PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|173aa|up_2|CP023704.1_3418015_3418534_+	PRK10140, PRK10140, N-acetyltransferase	NA|168aa|up_1|CP023704.1_3418601_3419105_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|402aa|up_0|CP023704.1_3419101_3420307_+	PRK07682, PRK07682, aminotransferase	NA|112aa|down_0|CP023704.1_3420706_3421042_-	NA	NA|133aa|down_1|CP023704.1_3421272_3421671_+	cd08018, M20_Acy1_amhX-like, M20 Peptidase aminoacylase 1 amhX-like subfamily	NA|269aa|down_2|CP023704.1_3421837_3422644_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|361aa|down_3|CP023704.1_3423220_3424303_-	COG3367, COG3367, Uncharacterized conserved protein [Function unknown]	NA|181aa|down_4|CP023704.1_3424820_3425363_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|91aa|down_5|CP023704.1_3425381_3425654_+	NA	NA|484aa|down_6|CP023704.1_3426368_3427820_+	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|280aa|down_7|CP023704.1_3428108_3428948_-	cd13599, PBP2_lipoprotein_Gna1946, The membrane-associated lipoprotein Gna1946 from Neisseria meningitidis; the type 2 periplasmic binding protein fold	NA|225aa|down_8|CP023704.1_3429012_3429687_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|338aa|down_9|CP023704.1_3429676_3430690_-	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	29	3647170-3647730	27,4,2	CRISPRCasFinder,CRT,PILER-CR	no	RT	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Unclear	GTTTCAATTCCTCATAGGTAAGATATAAAC,GTTTCAATTCCTCATAGGTAAGATATAAAC,GTTTCAATTCCTCATAGGTAAGATATAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	8,8,8	8	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA,NA	NA|277aa|up_9|CP023704.1_3634931_3635762_-	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component	NA|254aa|up_8|CP023704.1_3635754_3636516_-	pfam03609, EII-Sor, PTS system sorbose-specific iic component	NA|159aa|up_7|CP023704.1_3636535_3637012_-	pfam03830, PTSIIB_sorb, PTS system sorbose subfamily IIB component	NA|135aa|up_6|CP023704.1_3637032_3637437_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|278aa|up_5|CP023704.1_3638099_3638933_-	PRK07998, gatY, class II aldolase	NA|105aa|up_4|CP023704.1_3639695_3640010_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|339aa|up_3|CP023704.1_3642333_3643350_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|357aa|up_2|CP023704.1_3643377_3644448_-	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides	NA|388aa|up_1|CP023704.1_3644466_3645630_-	COG5505, COG5505, Predicted integral membrane protein [Function unknown]	NA|111aa|up_0|CP023704.1_3645717_3646050_-	pfam12986, DUF3870, Domain of unknown function (DUF3870)	NA|300aa|down_0|CP023704.1_3648536_3649436_-	PRK08185, PRK08185, hypothetical protein; Provisional	NA|284aa|down_1|CP023704.1_3649462_3650314_-	cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases	NA|361aa|down_2|CP023704.1_3650337_3651420_-	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]	NA|106aa|down_3|CP023704.1_3651434_3651752_-	COG1445, FrwB, Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]	NA|159aa|down_4|CP023704.1_3651848_3652325_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|down_5|CP023704.1_3653304_3653703_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|389aa|down_6|CP023704.1_3656532_3657699_-	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional	NA|153aa|down_7|CP023704.1_3661798_3662257_+	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|475aa|down_8|CP023704.1_3662257_3663682_+	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional	NA|287aa|down_9|CP023704.1_3663671_3664532_+	PRK08185, PRK08185, hypothetical protein; Provisional
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	30	3654781-3655875	3,28,5	PILER-CR,CRISPRCasFinder,CRT	no		c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Orphan	GTTTCAATTCCTCATAGGTAAGATATAAAC,GTTTCAATTCCTCATAGGTAAGATATAAAC,GTTTCAATTCCTCATAGGTAAGATATAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	16,16,16	16	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA,NA	NA|339aa|up_9|CP023704.1_3642333_3643350_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|357aa|up_8|CP023704.1_3643377_3644448_-	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides	NA|388aa|up_7|CP023704.1_3644466_3645630_-	COG5505, COG5505, Predicted integral membrane protein [Function unknown]	NA|111aa|up_6|CP023704.1_3645717_3646050_-	pfam12986, DUF3870, Domain of unknown function (DUF3870)	NA|300aa|up_5|CP023704.1_3648536_3649436_-	PRK08185, PRK08185, hypothetical protein; Provisional	NA|284aa|up_4|CP023704.1_3649462_3650314_-	cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases	NA|361aa|up_3|CP023704.1_3650337_3651420_-	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]	NA|106aa|up_2|CP023704.1_3651434_3651752_-	COG1445, FrwB, Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]	NA|159aa|up_1|CP023704.1_3651848_3652325_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_0|CP023704.1_3653304_3653703_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|389aa|down_0|CP023704.1_3656532_3657699_-	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional	NA|153aa|down_1|CP023704.1_3661798_3662257_+	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|475aa|down_2|CP023704.1_3662257_3663682_+	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional	NA|287aa|down_3|CP023704.1_3663671_3664532_+	PRK08185, PRK08185, hypothetical protein; Provisional	NA|259aa|down_4|CP023704.1_3664848_3665625_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|453aa|down_5|CP023704.1_3666846_3668205_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|346aa|down_6|CP023704.1_3668304_3669342_-	PRK10073, PRK10073, putative glycosyl transferase; Provisional	NA|374aa|down_7|CP023704.1_3669383_3670505_-	cd03812, GT4_CapH-like, capsular polysaccharide biosynthesis glycosyltransferase CapH and similar proteins	NA|490aa|down_8|CP023704.1_3670506_3671976_-	pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy	NA|422aa|down_9|CP023704.1_3672103_3673369_-	cd04946, GT4_AmsK-like, amylovoran biosynthesis glycosyltransferase AmsK and similar proteins
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	31	3687461-3688117	6	CRT	no		c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Orphan	TTTGTCCNNGAGAGCCGNTCTATTGGACAGTTT	33	12	230	3687494-3687512|3687494-3687512|3687494-3687512|3687494-3687512|3687494-3687512|3687494-3687512|3687494-3687512|3687494-3687512|3687494-3687512|3687494-3687512|3687494-3687512|3687494-3687512|3687494-3687512|3687494-3687512|3687494-3687512|3687494-3687512|3687494-3687512|3687494-3687512|3687494-3687512|3687546-3687564|3687546-3687564|3687546-3687564|3687546-3687564|3687546-3687564|3687546-3687564|3687546-3687564|3687546-3687564|3687546-3687564|3687546-3687564|3687598-3687616|3687598-3687616|3687598-3687616|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687650-3687668|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687702-3687720|3687754-3687772|3687754-3687772|3687754-3687772|3687754-3687772|3687754-3687772|3687754-3687772|3687754-3687772|3687754-3687772|3687754-3687772|3687754-3687772|3687754-3687772|3687754-3687772|3687754-3687772|3687754-3687772|3687754-3687772|3687754-3687772|3687754-3687772|3687806-3687824|3687858-3687876|3687858-3687876|3687858-3687876|3687858-3687876|3687858-3687876|3687858-3687876|3687858-3687876|3687858-3687876|3687858-3687876|3687858-3687876|3687858-3687876|3687858-3687876|3687858-3687876|3687858-3687876|3687858-3687876|3687858-3687876|3687858-3687876|3687858-3687876|3687858-3687876|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687910-3687928|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3687962-3687980|3688014-3688032|3688014-3688032|3688014-3688032|3688014-3688032|3688014-3688032|3688014-3688032|3688014-3688032|3688014-3688032|3688014-3688032|3688014-3688032|3688014-3688032|3688014-3688032|3688014-3688032|3688014-3688032|3688014-3688032|3688014-3688032|3688014-3688032|3688014-3688032|3688014-3688032|3688066-3688084|3688066-3688084|3688066-3688084|3688066-3688084|3688066-3688084|3688066-3688084|3688066-3688084|3688066-3688084|3688066-3688084|3688066-3688084|3688066-3688084|3688066-3688084|3688066-3688084|3688066-3688084	CP023704.1_3528506-3528488|CP023704.1_3528870-3528852|CP023704.1_3687339-3687357|CP023704.1_3528298-3528280|CP023704.1_3528558-3528540|CP023704.1_3685142-3685160|CP023704.1_3687391-3687409|CP023704.1_3694078-3694096|CP023704.1_3528454-3528436|CP023704.1_3528922-3528904|CP023704.1_3691673-3691691|CP023704.1_3694130-3694148|CP023704.1_3694182-3694200|CP023704.1_3694234-3694252|CP023704.1_3695066-3695084|CP023704.1_3695118-3695136|CP023704.1_3695170-3695188|CP023704.1_3758733-3758751|CP023704.1_3758889-3758907|CP023704.1_3691985-3692003|CP023704.1_3693818-3693836|CP023704.1_3694442-3694460|CP023704.1_3694546-3694564|CP023704.1_3694754-3694772|CP023704.1_3694806-3694824|CP023704.1_3694858-3694876|CP023704.1_3695014-3695032|CP023704.1_3694286-3694304|CP023704.1_3694650-3694668|CP023704.1_501177-501159|CP023704.1_3569273-3569255|CP023704.1_3694494-3694512|CP023704.1_989581-989563|CP023704.1_3567661-3567643|CP023704.1_3685194-3685212|CP023704.1_989061-989043|CP023704.1_989217-989199|CP023704.1_989425-989407|CP023704.1_989529-989511|CP023704.1_989633-989615|CP023704.1_3567557-3567539|CP023704.1_3567765-3567747|CP023704.1_3568649-3568631|CP023704.1_3569065-3569047|CP023704.1_3569169-3569151|CP023704.1_501437-501419|CP023704.1_501697-501679|CP023704.1_989113-989095|CP023704.1_989321-989303|CP023704.1_3567505-3567487|CP023704.1_3567973-3567955|CP023704.1_3568025-3568007|CP023704.1_3568077-3568059|CP023704.1_3568129-3568111|CP023704.1_3568389-3568371|CP023704.1_3568545-3568527|CP023704.1_3568597-3568579|CP023704.1_3568701-3568683|CP023704.1_3568909-3568891|CP023704.1_3568961-3568943|CP023704.1_3569013-3568995|CP023704.1_3569221-3569203|CP023704.1_989269-989251|CP023704.1_3685454-3685472|CP023704.1_501437-501419|CP023704.1_501697-501679|CP023704.1_989009-988991|CP023704.1_989165-989147|CP023704.1_989321-989303|CP023704.1_989373-989355|CP023704.1_989477-989459|CP023704.1_3567349-3567331|CP023704.1_3567505-3567487|CP023704.1_3567713-3567695|CP023704.1_3567973-3567955|CP023704.1_3568025-3568007|CP023704.1_3568077-3568059|CP023704.1_3568129-3568111|CP023704.1_3568389-3568371|CP023704.1_3568857-3568839|CP023704.1_3568909-3568891|CP023704.1_3569221-3569203|CP023704.1_501385-501367|CP023704.1_989061-989043|CP023704.1_989217-989199|CP023704.1_989425-989407|CP023704.1_989529-989511|CP023704.1_989633-989615|CP023704.1_3567765-3567747|CP023704.1_3567817-3567799|CP023704.1_3567921-3567903|CP023704.1_3568337-3568319|CP023704.1_3568441-3568423|CP023704.1_3568649-3568631|CP023704.1_3569117-3569099|CP023704.1_3685246-3685264|CP023704.1_3685298-3685316|CP023704.1_501853-501835|CP023704.1_501125-501107|CP023704.1_3693870-3693888|CP023704.1_3693922-3693940|CP023704.1_3693974-3693992|CP023704.1_3694130-3694148|CP023704.1_3694182-3694200|CP023704.1_3694234-3694252|CP023704.1_3694338-3694356|CP023704.1_3694390-3694408|CP023704.1_3695066-3695084|CP023704.1_3695118-3695136|CP023704.1_3695170-3695188|CP023704.1_3758733-3758751|CP023704.1_3758889-3758907|CP023704.1_3687287-3687305|CP023704.1_3528506-3528488|CP023704.1_3528870-3528852|CP023704.1_3687339-3687357|CP023704.1_3528298-3528280|CP023704.1_3528558-3528540|CP023704.1_3685142-3685160|CP023704.1_3687391-3687409|CP023704.1_3694078-3694096|CP023704.1_3528454-3528436|CP023704.1_3528922-3528904|CP023704.1_3691673-3691691|CP023704.1_3694130-3694148|CP023704.1_3694182-3694200|CP023704.1_3694234-3694252|CP023704.1_3695066-3695084|CP023704.1_3695118-3695136|CP023704.1_3695170-3695188|CP023704.1_3758733-3758751|CP023704.1_3758889-3758907|CP023704.1_989269-989251|CP023704.1_3685454-3685472|CP023704.1_501437-501419|CP023704.1_501697-501679|CP023704.1_989009-988991|CP023704.1_989165-989147|CP023704.1_989321-989303|CP023704.1_989373-989355|CP023704.1_989477-989459|CP023704.1_3567349-3567331|CP023704.1_3567505-3567487|CP023704.1_3567713-3567695|CP023704.1_3567973-3567955|CP023704.1_3568025-3568007|CP023704.1_3568077-3568059|CP023704.1_3568129-3568111|CP023704.1_3568389-3568371|CP023704.1_3568857-3568839|CP023704.1_3568909-3568891|CP023704.1_3569221-3569203|CP023704.1_501385-501367|CP023704.1_989061-989043|CP023704.1_989217-989199|CP023704.1_989425-989407|CP023704.1_989529-989511|CP023704.1_989633-989615|CP023704.1_3567765-3567747|CP023704.1_3567817-3567799|CP023704.1_3567921-3567903|CP023704.1_3568337-3568319|CP023704.1_3568441-3568423|CP023704.1_3568649-3568631|CP023704.1_3569117-3569099|CP023704.1_3685142-3685160|CP023704.1_3687391-3687409|CP023704.1_3694078-3694096|CP023704.1_3528454-3528436|CP023704.1_3528506-3528488|CP023704.1_3528870-3528852|CP023704.1_3528922-3528904|CP023704.1_3687339-3687357|CP023704.1_3691673-3691691|CP023704.1_3694130-3694148|CP023704.1_3694182-3694200|CP023704.1_3694234-3694252|CP023704.1_3695066-3695084|CP023704.1_3695118-3695136|CP023704.1_3695170-3695188|CP023704.1_3758733-3758751|CP023704.1_3758889-3758907|CP023704.1_501021-501003|CP023704.1_501125-501107|CP023704.1_501229-501211|CP023704.1_501593-501575|CP023704.1_501853-501835|CP023704.1_988957-988939|CP023704.1_3528298-3528280|CP023704.1_3528558-3528540|CP023704.1_3567245-3567227|CP023704.1_3567401-3567383|CP023704.1_3568181-3568163|CP023704.1_3568285-3568267|CP023704.1_3568753-3568735|CP023704.1_3568805-3568787|CP023704.1_3694494-3694512|CP023704.1_989061-989043|CP023704.1_989217-989199|CP023704.1_989425-989407|CP023704.1_989529-989511|CP023704.1_989633-989615|CP023704.1_3567765-3567747|CP023704.1_989113-989095|CP023704.1_989581-989563|CP023704.1_3567661-3567643|CP023704.1_3685194-3685212|CP023704.1_989269-989251|CP023704.1_3567557-3567539|CP023704.1_3567921-3567903|CP023704.1_3568337-3568319|CP023704.1_3568441-3568423|CP023704.1_3569065-3569047|CP023704.1_3569117-3569099|CP023704.1_3569169-3569151|CP023704.1_3685454-3685472|CP023704.1_501645-501627|CP023704.1_3685350-3685368|CP023704.1_3685402-3685420|CP023704.1_3691829-3691847|CP023704.1_3694910-3694928|CP023704.1_500969-500951|CP023704.1_501073-501055|CP023704.1_501281-501263|CP023704.1_501333-501315|CP023704.1_501489-501471|CP023704.1_501749-501731|CP023704.1_501801-501783|CP023704.1_501541-501523|CP023704.1_501905-501887	NA	12	12	Orphan	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA,NA|83aa|down_4|CP023704.1_3698858_3699107_-,NA|83aa|down_5|CP023704.1_3699088_3699337_-,NA|78aa|down_6|CP023704.1_3699333_3699567_-,NA|83aa|down_7|CP023704.1_3699778_3700027_-,NA|83aa|down_8|CP023704.1_3700123_3700372_-,NA|69aa|down_9|CP023704.1_3700812_3701019_-	NA|205aa|up_9|CP023704.1_3673368_3673983_-	pfam02397, Bac_transf, Bacterial sugar transferase	NA|302aa|up_8|CP023704.1_3673963_3674869_-	cd08946, SDR_e, extended (e) SDRs	NA|373aa|up_7|CP023704.1_3674921_3676040_-	PRK02186, PRK02186, argininosuccinate lyase; Provisional	NA|410aa|up_6|CP023704.1_3676039_3677269_-	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|611aa|up_5|CP023704.1_3677487_3679320_-	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|295aa|up_4|CP023704.1_3679389_3680274_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|255aa|up_3|CP023704.1_3680972_3681737_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|232aa|up_2|CP023704.1_3681765_3682461_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|241aa|up_1|CP023704.1_3682460_3683183_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|266aa|up_0|CP023704.1_3683753_3684551_+	cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases	NA|303aa|down_0|CP023704.1_3688357_3689266_+	pfam08378, NERD, Nuclease-related domain	NA|512aa|down_1|CP023704.1_3689782_3691318_+	cd01031, EriC, ClC chloride channel EriC	NA|556aa|down_2|CP023704.1_3695572_3697240_-	PRK09419, PRK09419, multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase/5'-nucleotidase	NA|305aa|down_3|CP023704.1_3697413_3698328_+	pfam08378, NERD, Nuclease-related domain	NA|83aa|down_4|CP023704.1_3698858_3699107_-	NA	NA|83aa|down_5|CP023704.1_3699088_3699337_-	NA	NA|78aa|down_6|CP023704.1_3699333_3699567_-	NA	NA|83aa|down_7|CP023704.1_3699778_3700027_-	NA	NA|83aa|down_8|CP023704.1_3700123_3700372_-	NA	NA|69aa|down_9|CP023704.1_3700812_3701019_-	NA
GCA_003096215.1_ASM309621v1	CP023704	Bacillus thermoamylovorans strain SSBM chromosome, complete genome	33	3869596-3870565	7	CRT	no	cas14j,c2c10_CAS-V-U3	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	Unclear	AAANGGNGACGAGANNGNNNCTCGTCGNCAAAAT	34	4	18	3869682-3869699|3869682-3869699|3870098-3870115|3870098-3870115|3870462-3870479|3870462-3870479|3870462-3870479|3870462-3870479|3870462-3870479|3870462-3870479|3870462-3870479|3870514-3870531|3870514-3870531|3870514-3870531|3870514-3870531|3870514-3870531|3870514-3870531|3870514-3870531	CP023704.1_2888174-2888191|CP023704.1_2888330-2888347|CP023704.1_2888174-2888191|CP023704.1_2888330-2888347|CP023704.1_822651-822634|CP023704.1_2005263-2005280|CP023704.1_822495-822478|CP023704.1_1092098-1092081|CP023704.1_1092410-1092393|CP023704.1_1400708-1400725|CP023704.1_3355255-3355238|CP023704.1_3317767-3317750|CP023704.1_330884-330901|CP023704.1_895612-895629|CP023704.1_2590080-2590063|CP023704.1_2590548-2590531|CP023704.1_3320709-3320692|CP023704.1_3320761-3320744	NA	18	18	TypeV	c2c10_CAS-V-U3,cas3,cas14j,c2c9_V-U4,RT,csa3,DEDDh,DinG,WYL,PrimPol,c2c4_V-U1,csx1,csx20,csm3gr7,csx19,cas10,cas4,cas5,cas7,cas8b1,cas6	NA|64aa|up_4|CP023704.1_3864327_3864519_-,NA	cas14j|374aa|up_9|CP023704.1_3859504_3860626_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|133aa|up_8|CP023704.1_3860846_3861245_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|180aa|up_7|CP023704.1_3861257_3861797_-	COG5578, COG5578, Predicted integral membrane protein [Function unknown]	c2c10_CAS-V-U3|372aa|up_6|CP023704.1_3862154_3863270_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|193aa|up_5|CP023704.1_3863645_3864224_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|64aa|up_4|CP023704.1_3864327_3864519_-	NA	NA|767aa|up_3|CP023704.1_3864574_3866875_-	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	NA|250aa|up_2|CP023704.1_3867026_3867776_+	TIGR04094, AraC_family_transcriptional_regulator, YSIRK-targeted surface antigen transcriptional regulator	NA|116aa|up_1|CP023704.1_3868333_3868681_+	pfam08830, DUF1806, Protein of unknown function (DUF1806)	NA|224aa|up_0|CP023704.1_3868840_3869512_+	TIGR04000, thiol_BshB2, bacillithiol biosynthesis deacetylase BshB2	NA|560aa|down_0|CP023704.1_3870649_3872329_-	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product	NA|505aa|down_1|CP023704.1_3872328_3873843_-	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13	NA|130aa|down_2|CP023704.1_3873844_3874234_-	cd04776, HTH_GnyR, Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR	NA|559aa|down_3|CP023704.1_3874752_3876429_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|342aa|down_4|CP023704.1_3876808_3877834_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|451aa|down_5|CP023704.1_3878285_3879638_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|282aa|down_6|CP023704.1_3879884_3880730_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|280aa|down_7|CP023704.1_3880729_3881569_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|293aa|down_8|CP023704.1_3882306_3883185_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|352aa|down_9|CP023704.1_3883272_3884328_-	cd05657, M42_glucanase_like, M42 Peptidase, endoglucanase-like subfamily
