The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	0	7608	2034706	tRNA	Acanthocystis_turfacea_Chlorella_virus(33.33%)	8	NA	NA
AWI33314.1|28_634_-	hypothetical protein	NA	NA	NA	NA	NA
AWI33315.1|649_1684_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AWI33316.1|2351_3695_-	MATE family efflux transporter	NA	NA	NA	NA	NA
AWI33317.1|3687_4251_-	tellurium resistance protein TehB	NA	NA	NA	NA	NA
AWI33318.1|4243_5125_-	carbon-nitrogen hydrolase	NA	M1HCD5	Acanthocystis_turfacea_Chlorella_virus	35.4	2.5e-45
AWI33319.1|5283_5958_-|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	tRNA	NA	NA	NA	NA
AWI33320.1|5954_6737_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	33.3	9.0e-39
AWI33321.1|6738_7608_-	geranyl transferase	NA	A0A1V0SE37	Indivirus	29.5	4.8e-09
>prophage 2
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	37409	38594	2034706		Moraxella_phage(100.0%)	1	NA	NA
AWI33342.1|37409_38594_-	hypothetical protein	NA	A0A0R6PJK4	Moraxella_phage	25.8	1.5e-16
>prophage 3
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	49995	51945	2034706		Moraxella_phage(100.0%)	1	NA	NA
AWI33351.1|49995_51945_-	hypothetical protein	NA	A0A0R6PJK4	Moraxella_phage	25.8	2.4e-16
>prophage 4
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	55221	56496	2034706	protease	Phage_TP(100.0%)	1	NA	NA
AWI33354.1|55221_56496_+|protease	collagenase-like protease	protease	Q6DW11	Phage_TP	30.6	3.9e-39
>prophage 5
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	86756	91530	2034706		Cyanophage(40.0%)	5	NA	NA
AWI33398.1|86756_88037_-	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	53.0	2.8e-122
AWI33399.1|88069_89101_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	62.2	2.7e-115
AWI33400.1|89275_90562_+	peptidase S41	NA	A0A0R6PIZ1	Moraxella_phage	28.3	1.8e-28
AWI33401.1|90574_91297_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4SM18	Cyanophage	41.0	8.0e-42
AWI33402.1|91293_91530_+	phosphoribosylformylglycinamidine synthase	NA	A0A1D7SNZ9	Cyanophage	33.8	1.5e-05
>prophage 6
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	95721	97242	2034706		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
AWI35033.1|95721_97242_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	38.6	3.4e-66
>prophage 7
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	103163	118276	2034706	tRNA	Hokovirus(12.5%)	10	NA	NA
AWI33412.1|103163_104549_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	31.7	6.9e-58
AWI33413.1|104859_105999_+	GDP-mannose 4,6-dehydratase	NA	E5EQW4	Bathycoccus_sp._RCC1105_virus	59.1	4.9e-118
AWI35034.1|106909_108079_+	pyridoxamine 5-phosphate oxidase	NA	A0A0E3G0Y1	Synechococcus_phage	32.6	7.9e-47
AWI33414.1|109186_110242_+	GDP-fucose synthetase	NA	D1LW79	Prochlorococcus_phage	47.7	6.6e-85
AWI33415.1|110296_110818_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A218MN57	uncultured_virus	30.7	2.7e-15
AWI33416.1|111226_111823_+	O-acetyltransferase	NA	NA	NA	NA	NA
AWI35035.1|112386_113463_+	aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.5	1.2e-33
AWI33417.1|113541_114819_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	50.5	3.2e-86
AWI33418.1|114823_117208_+	hypothetical protein	NA	NA	NA	NA	NA
AWI33419.1|117184_118276_-	peptide chain release factor 2	NA	W8EDB3	Pseudomonas_phage	40.5	4.4e-07
>prophage 8
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	125482	138261	2034706	tRNA	Bacillus_phage(20.0%)	13	NA	NA
AWI33426.1|125482_128167_-	DNA polymerase I	NA	A0A142F1Q9	Bacillus_phage	27.9	2.0e-53
AWI33427.1|128171_128906_-	hypothetical protein	NA	A0A0R6PEZ3	Moraxella_phage	46.7	2.4e-41
AWI33428.1|128999_130064_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AWI33429.1|130064_130595_-	peroxiredoxin	NA	NA	NA	NA	NA
AWI33430.1|130676_131432_-	ABC transporter	NA	G3M9Y6	Bacillus_virus	35.1	3.3e-30
AWI33431.1|131441_132206_-	taurine ABC transporter permease	NA	NA	NA	NA	NA
AWI33432.1|132211_133186_-	twin-arginine translocation pathway signal protein	NA	NA	NA	NA	NA
AWI33433.1|133210_133408_+	hypothetical protein	NA	NA	NA	NA	NA
AWI33434.1|133410_134502_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	42.6	1.5e-68
AWI33435.1|134548_135499_-	molybdenum cofactor biosynthesis protein MoaA	NA	NA	NA	NA	NA
AWI33436.1|135590_136625_+	hypothetical protein	NA	NA	NA	NA	NA
AWI33437.1|136624_137344_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AWI33438.1|137340_138261_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	50.3	3.2e-75
>prophage 9
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	148017	148536	2034706		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AWI33444.1|148017_148536_+	inorganic pyrophosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	50.3	3.5e-39
>prophage 10
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	159189	159813	2034706		Murmansk_poxvirus(100.0%)	1	NA	NA
AWI33453.1|159189_159813_+	guanylate kinase	NA	A0A223FN12	Murmansk_poxvirus	34.5	3.3e-20
>prophage 11
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	164729	168140	2034706		uncultured_Caudovirales_phage(33.33%)	3	NA	NA
AWI33459.1|164729_165827_-	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	55.7	2.3e-08
AWI33460.1|165996_166983_+	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	NA	A0A1V0SAI8	Catovirus	34.4	4.6e-40
AWI33461.1|166979_168140_+	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	A0A0P0CNN6	Ostreococcus_mediterraneus_virus	26.9	1.9e-16
>prophage 12
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	177637	179698	2034706		Bacillus_virus(50.0%)	3	NA	NA
AWI33466.1|177637_178402_+	peptide ABC transporter substrate-binding protein	NA	G3M9Y6	Bacillus_virus	26.0	5.9e-11
AWI33467.1|178416_178845_+	pseudoazurin	NA	NA	NA	NA	NA
AWI33468.1|178816_179698_+	hypothetical protein	NA	A0A1V0SGC8	Hokovirus	27.0	5.1e-14
>prophage 13
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	194143	200323	2034706	tRNA	Erwinia_phage(33.33%)	5	NA	NA
AWI33483.1|194143_195481_+	HslU--HslV peptidase ATPase subunit	NA	A0A1B2IBU3	Erwinia_phage	25.2	2.3e-26
AWI33484.1|195493_196378_+	GTPase Era	NA	NA	NA	NA	NA
AWI33485.1|196390_197374_+	peptidase	NA	NA	NA	NA	NA
AWI33486.1|197359_197980_-	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	A0A0N9Z738	Cassava_brown_streak_virus	34.2	1.4e-10
AWI35039.1|199546_200323_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	35.4	3.0e-34
>prophage 14
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	205283	205571	2034706		Burkholderia_phage(100.0%)	1	NA	NA
AWI33490.1|205283_205571_+	DNA-binding protein	NA	Q6QIE5	Burkholderia_phage	40.2	2.8e-06
>prophage 15
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	209824	213260	2034706		Bacillus_phage(33.33%)	4	NA	NA
AWI33495.1|209824_211195_+	phospho-sugar mutase	NA	A0A127AWJ1	Bacillus_phage	33.5	2.3e-50
AWI33496.1|211197_212208_+	dihydroorotase	NA	NA	NA	NA	NA
AWI33497.1|212208_212706_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	44.7	2.0e-28
AWI33498.1|212690_213260_+	dTMP kinase	NA	A0A1Y0SZG1	Pseudomonas_phage	31.2	4.6e-08
>prophage 16
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	217272	217941	2034706		Bacillus_phage(100.0%)	1	NA	NA
AWI33503.1|217272_217941_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	34.7	5.0e-30
>prophage 17
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	226317	226854	2034706		Salmonella_phage(100.0%)	1	NA	NA
AWI33509.1|226317_226854_-	superoxide dismutase	NA	Q9MC02	Salmonella_phage	49.0	2.3e-38
>prophage 18
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	229926	231948	2034706		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
AWI33513.1|229926_231948_+	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y1H0	Organic_Lake_phycodnavirus	25.6	7.3e-24
>prophage 19
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	250437	252288	2034706		Phaeocystis_globosa_virus(100.0%)	1	NA	NA
AWI33535.1|250437_252288_+	asparagine synthase (glutamine-hydrolyzing)	NA	R4TIC1	Phaeocystis_globosa_virus	30.7	1.8e-29
>prophage 20
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	259321	261064	2034706		Mimivirus(100.0%)	1	NA	NA
AWI33542.1|259321_261064_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A1X9VNR2	Mimivirus	29.8	6.3e-32
>prophage 21
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	267224	268901	2034706		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
AWI33549.1|267224_268901_+	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y1H0	Organic_Lake_phycodnavirus	28.9	2.9e-26
>prophage 22
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	272861	273965	2034706		Bathycoccus_sp._RCC1105_virus(100.0%)	1	NA	NA
AWI33554.1|272861_273965_+	erythromycin biosynthesis sensory transduction protein eryC1	NA	E5ES42	Bathycoccus_sp._RCC1105_virus	31.0	6.5e-43
>prophage 23
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	277853	281160	2034706		Campylobacter_phage(50.0%)	4	NA	NA
AWI33557.1|277853_278390_+	peptidase	NA	A7YG70	Campylobacter_phage	67.1	4.7e-23
AWI33558.1|278376_279801_-	hypothetical protein	NA	NA	NA	NA	NA
AWI33559.1|279948_280164_-	hypothetical protein	NA	NA	NA	NA	NA
AWI33560.1|280470_281160_+	DNA-binding protein	NA	E5DV74	Deep-sea_thermophilic_phage	25.5	2.8e-07
>prophage 24
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	302254	306486	2034706	tRNA	Planktothrix_phage(50.0%)	4	NA	NA
AWI33576.1|302254_302923_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	1.5e-26
AWI33577.1|302906_304145_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
AWI33578.1|304149_305400_-	hypothetical protein	NA	NA	NA	NA	NA
AWI33579.1|305505_306486_-	pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.6	3.8e-10
>prophage 25
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	312222	314296	2034706		Streptococcus_phage(50.0%)	3	NA	NA
AWI33585.1|312222_312795_+	hypothetical protein	NA	A0A1X9I5T8	Streptococcus_phage	35.7	1.4e-17
AWI33586.1|312774_313383_-	hypothetical protein	NA	NA	NA	NA	NA
AWI33587.1|313384_314296_-	aspartate carbamoyltransferase	NA	M1I6M4	Paramecium_bursaria_Chlorella_virus	34.2	8.1e-31
>prophage 26
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	330284	331457	2034706		Ralstonia_phage(100.0%)	1	NA	NA
AWI33601.1|330284_331457_+	glutathionylspermidine synthase	NA	B2ZXR7	Ralstonia_phage	30.2	6.5e-33
>prophage 27
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	352431	356016	2034706	integrase	Planktothrix_phage(33.33%)	4	348055:348070	362559:362574
348055:348070	attL	ATTTTCTATACTATAT	NA	NA	NA	NA
AWI33612.1|352431_353199_+	heme ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	1.5e-17
AWI33613.1|353230_354052_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWI33614.1|354212_355277_+|integrase	integrase	integrase	A3F636	Streptococcus_phage	27.0	1.7e-08
AWI35048.1|355278_356016_-	hypothetical protein	NA	A0A060AMV8	Cronobacter_phage	35.5	3.0e-12
362559:362574	attR	ATATAGTATAGAAAAT	NA	NA	NA	NA
>prophage 28
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	367449	372859	2034706		Saccharomonospora_phage(50.0%)	2	NA	NA
AWI33625.1|367449_370968_-	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	35.8	1.1e-197
AWI33626.1|371008_372859_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	36.3	3.4e-36
>prophage 29
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	386598	387345	2034706		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
AWI33639.1|386598_387345_+	ABC transporter	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.6	5.2e-20
>prophage 30
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	393827	411435	2034706	tRNA	Moumouvirus(22.22%)	18	NA	NA
AWI33646.1|393827_394256_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	42.8	1.3e-26
AWI33647.1|394260_394935_+	ribonuclease III	NA	M1PMQ4	Moumouvirus	32.9	4.0e-27
AWI33648.1|394931_396014_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	39.8	4.1e-66
AWI33649.1|395997_396924_+	hypothetical protein	NA	NA	NA	NA	NA
AWI33650.1|396915_398391_-	hypothetical protein	NA	A0A2H4JEI4	uncultured_Caudovirales_phage	31.1	6.5e-14
AWI33651.1|398488_399598_-|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	A0A2P1ELP3	Moumouvirus	26.9	7.1e-13
AWI33652.1|399604_400366_-	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AWI33653.1|400362_401178_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
AWI33654.1|401186_401951_-	motility protein A	NA	NA	NA	NA	NA
AWI33655.1|402070_403384_+	UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase	NA	A0A1S5V090	Saudi_moumouvirus	35.6	4.4e-30
AWI33656.1|403437_403635_+	thiamine biosynthesis protein ThiS	NA	NA	NA	NA	NA
AWI33657.1|403690_404701_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
AWI33658.1|404690_405428_+	metallophosphoesterase	NA	NA	NA	NA	NA
AWI33659.1|405428_406403_+	chemotaxis protein CheV	NA	Q56AR1	Bacillus_thuringiensis_phage	30.2	1.3e-39
AWI33660.1|406431_408825_+	chemotaxis protein CheA	NA	Q56AR1	Bacillus_thuringiensis_phage	25.0	1.4e-13
AWI33661.1|408824_409316_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AWI35051.1|409333_410311_-	hypothetical protein	NA	NA	NA	NA	NA
AWI33662.1|410310_411435_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	26.2	9.6e-18
>prophage 31
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	415389	416085	2034706		Murid_herpesvirus(100.0%)	1	NA	NA
AWI33669.1|415389_416085_+	uracil-DNA glycosylase	NA	P88984	Murid_herpesvirus	44.2	1.0e-46
>prophage 32
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	444896	448513	2034706		Bacillus_virus(50.0%)	4	NA	NA
AWI33695.1|444896_445643_-	glutamine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.8	4.3e-30
AWI33696.1|445651_446305_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AWI33697.1|446305_446974_-	polar amino acid ABC transporter permease	NA	NA	NA	NA	NA
AWI33698.1|446980_448513_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	36.3	1.8e-46
>prophage 33
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	459298	461056	2034706		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AWI33706.1|459298_461056_-	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	83.0	8.0e-11
>prophage 34
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	483235	491401	2034706	transposase	Helicobacter_phage(60.0%)	9	NA	NA
AWI33726.1|483235_483682_-	single-stranded DNA-binding protein	NA	A0A1B0VAF5	Salmonella_phage	38.5	8.5e-18
AWI33727.1|483749_483944_+	hypothetical protein	NA	NA	NA	NA	NA
AWI33728.1|486165_486501_+	hypothetical protein	NA	I6R0L8	Salmonella_phage	40.5	1.6e-16
AWI33729.1|486652_487693_+	hypothetical protein	NA	NA	NA	NA	NA
AWI33730.1|487702_487897_+	hypothetical protein	NA	NA	NA	NA	NA
AWI33731.1|488044_488377_+	hypothetical protein	NA	NA	NA	NA	NA
AWI33732.1|488383_489550_+	hypothetical protein	NA	A0A1S5RH85	Helicobacter_phage	36.0	1.1e-51
AWI33733.1|489651_491040_+	DNA primase	NA	A0A1S5RH72	Helicobacter_phage	37.4	6.2e-67
AWI33734.1|491023_491401_-|transposase	transposase	transposase	A0A1S5RH98	Helicobacter_phage	55.0	5.0e-35
>prophage 35
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	499966	514092	2034706		Chrysochromulina_ericina_virus(28.57%)	10	NA	NA
AWI33743.1|499966_504358_-	methyltransferase type 12	NA	A0A0N9QZQ5	Chrysochromulina_ericina_virus	26.9	9.2e-40
AWI33744.1|504357_505581_-	UDP-N-acetyl-D-mannosamine dehydrogenase	NA	M1HNJ7	Paramecium_bursaria_Chlorella_virus	27.6	2.3e-28
AWI35056.1|505577_506723_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	30.2	1.7e-30
AWI33745.1|507016_507718_+	hypothetical protein	NA	A0A1V0SAH6	Catovirus	36.7	2.5e-08
AWI33746.1|507714_508332_+	hypothetical protein	NA	NA	NA	NA	NA
AWI33747.1|508328_509618_+	hypothetical protein	NA	A0A1V0SAH6	Catovirus	36.7	4.7e-08
AWI33748.1|509614_510322_+	hypothetical protein	NA	NA	NA	NA	NA
AWI33749.1|510318_511287_+	galactitol-1-phosphate 5-dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	26.0	1.3e-07
AWI33750.1|511279_511945_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AWI33751.1|511947_514092_+	hypothetical protein	NA	F2Y1U7	Organic_Lake_phycodnavirus	25.9	7.0e-09
>prophage 36
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	538765	540457	2034706		Bacillus_phage(100.0%)	1	NA	NA
AWI33776.1|538765_540457_-	ABC transporter permease	NA	W8CYL7	Bacillus_phage	30.8	6.2e-61
>prophage 37
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	546012	547059	2034706		Mamastrovirus(100.0%)	1	NA	NA
AWI33781.1|546012_547059_+	aminofutalosine synthase MqnE	NA	A9ZMK9	Mamastrovirus	35.8	1.2e-17
>prophage 38
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	564141	569340	2034706		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AWI33798.1|564141_569340_-	hypothetical protein	NA	A0A1B1IUC6	uncultured_Mediterranean_phage	28.1	1.3e-05
>prophage 39
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	572802	574134	2034706		Bacillus_phage(100.0%)	1	NA	NA
AWI33804.1|572802_574134_-	UDP-glucose 6-dehydrogenase	NA	A0A127AXI2	Bacillus_phage	37.8	2.3e-79
>prophage 40
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	580811	582758	2034706		uncultured_virus(100.0%)	2	NA	NA
AWI33815.1|580811_582452_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	59.6	1.0e-164
AWI35057.1|582497_582758_-	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	52.3	9.3e-17
>prophage 41
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	586181	587222	2034706		Tupanvirus(100.0%)	1	NA	NA
AWI35058.1|586181_587222_+	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.4	1.2e-33
>prophage 42
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	596244	603072	2034706		Erysipelothrix_phage(25.0%)	4	NA	NA
AWI33822.1|596244_598044_+	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	41.6	3.2e-23
AWI33823.1|598054_600421_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A127AW21	Bacillus_phage	38.5	6.7e-138
AWI33824.1|600421_601813_+	phosphate starvation-inducible protein PhoH	NA	D5GV52	Campylobacter_virus	30.0	5.1e-45
AWI33825.1|601809_603072_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SIT1	Klosneuvirus	33.1	1.5e-43
>prophage 43
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	614751	615291	2034706		Vibrio_phage(100.0%)	1	NA	NA
AWI33832.1|614751_615291_-	GTP cyclohydrolase I FolE	NA	A0A2I7S8W4	Vibrio_phage	48.3	8.4e-44
>prophage 44
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	629361	632498	2034706	tRNA	unidentified_phage(33.33%)	4	NA	NA
AWI33848.1|629361_630150_-	ParA family protein	NA	H7BUL8	unidentified_phage	33.5	1.9e-20
AWI33849.1|630161_630794_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AWI33850.1|630793_631690_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	37.8	1.5e-05
AWI33851.1|631712_632498_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	35.8	1.7e-32
>prophage 45
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	636957	647959	2034706	tRNA	Aeromonas_phage(25.0%)	10	NA	NA
AWI33861.1|636957_637833_-	signal peptide peptidase SppA	NA	A0A1I9KF73	Aeromonas_phage	27.4	3.7e-09
AWI33862.1|638095_638431_+	hypothetical protein	NA	NA	NA	NA	NA
AWI33863.1|638424_638694_+	carbonic anhydrase	NA	NA	NA	NA	NA
AWI33864.1|639574_641377_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	25.6	3.8e-24
AWI33865.1|641470_641743_+	hypothetical protein	NA	NA	NA	NA	NA
AWI33866.1|641922_644484_-|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L1X7	Tupanvirus	36.3	1.5e-69
AWI33867.1|644709_645168_-	signal peptidase II	NA	NA	NA	NA	NA
AWI33868.1|645164_646505_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AWI33869.1|646602_646878_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AWI33870.1|646894_647959_+	peptide chain release factor 1	NA	W8EDB3	Pseudomonas_phage	39.8	1.0e-05
>prophage 46
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	651294	652758	2034706		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AWI33875.1|651294_652758_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	34.0	6.6e-51
>prophage 47
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	657921	663117	2034706	tRNA	Bacillus_phage(50.0%)	3	NA	NA
AWI33880.1|657921_659934_-	ATP-dependent DNA helicase	NA	A7KV33	Bacillus_phage	26.2	7.2e-48
AWI35060.1|659939_660332_-	flagellar biosynthesis protein FliW	NA	NA	NA	NA	NA
AWI33881.1|660474_663117_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	39.9	2.9e-150
>prophage 48
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	668172	669661	2034706		Hokovirus(50.0%)	2	NA	NA
AWI33887.1|668172_669102_+	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	37.5	1.8e-49
AWI33888.1|669073_669661_+	peptidylprolyl isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	45.6	3.8e-26
>prophage 49
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	674649	678853	2034706		Bacillus_phage(50.0%)	3	NA	NA
AWI33893.1|674649_676740_+	ATP-dependent DNA helicase	NA	A7KV33	Bacillus_phage	37.9	1.6e-106
AWI33894.1|676822_677275_+	hypothetical protein	NA	NA	NA	NA	NA
AWI33895.1|677416_678853_-	catalase	NA	A0A2K9L0T1	Tupanvirus	49.0	6.0e-105
>prophage 50
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	682338	684182	2034706		Escherichia_phage(50.0%)	2	NA	NA
AWI33898.1|682338_683502_+	hypothetical protein	NA	C9DGN7	Escherichia_phage	39.5	4.0e-35
AWI33899.1|683642_684182_+	hypothetical protein	NA	F6MIM2	Haemophilus_phage	33.7	6.9e-14
>prophage 51
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	688213	692798	2034706	transposase	Nitratiruptor_phage(33.33%)	4	NA	NA
AWI33902.1|688213_688435_+	transcriptional regulator	NA	M5A9C2	Nitratiruptor_phage	60.6	2.4e-05
AWI33903.1|688567_688909_+	hypothetical protein	NA	NA	NA	NA	NA
AWI33904.1|690197_690698_+|transposase	transposase	transposase	A0A1S5RHD5	Helicobacter_phage	58.8	5.4e-45
AWI33905.1|690710_692798_-	hypothetical protein	NA	A0A0M4U788	Ralstonia_phage	27.3	3.7e-15
>prophage 52
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	695859	696917	2034706		Prochlorococcus_phage(50.0%)	2	NA	NA
AWI33908.1|695859_696093_-	acyl carrier protein	NA	M4QDG5	Prochlorococcus_phage	60.7	3.4e-10
AWI33909.1|696173_696917_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	24.7	7.3e-06
>prophage 53
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	711542	712961	2034706		Mycoplasma_phage(100.0%)	1	NA	NA
AWI33922.1|711542_712961_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	37.9	7.8e-49
>prophage 54
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	722387	723353	2034706		Tupanvirus(100.0%)	1	NA	NA
AWI33933.1|722387_723353_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	A0A2K9L4X0	Tupanvirus	22.7	2.3e-07
>prophage 55
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	728296	729850	2034706		Agrobacterium_phage(100.0%)	1	NA	NA
AWI33939.1|728296_729850_-	hypothetical protein	NA	A0A2L0UZX3	Agrobacterium_phage	22.5	1.5e-05
>prophage 56
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	733248	746422	2034706	tRNA	uncultured_Mediterranean_phage(40.0%)	14	NA	NA
AWI33942.1|733248_734178_-	peptidase	NA	A8ATH6	Listeria_phage	39.8	6.1e-18
AWI33943.1|734174_735311_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AWI33944.1|735297_736497_-	diguanylate cyclase	NA	NA	NA	NA	NA
AWI33945.1|736496_736994_-	hypothetical protein	NA	NA	NA	NA	NA
AWI33946.1|736990_739435_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	41.2	3.1e-162
AWI33947.1|739443_739785_-	hypothetical protein	NA	NA	NA	NA	NA
AWI33948.1|739794_740766_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	41.3	5.5e-46
AWI33949.1|740765_742355_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AWI33950.1|742351_742633_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	38.6	1.6e-09
AWI33951.1|742697_743036_-	hypothetical protein	NA	NA	NA	NA	NA
AWI33952.1|743158_743494_-	hypothetical protein	NA	NA	NA	NA	NA
AWI33953.1|743498_743744_-	hypothetical protein	NA	NA	NA	NA	NA
AWI33954.1|743976_745062_-	hypothetical protein	NA	NA	NA	NA	NA
AWI33955.1|745096_746422_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	42.2	3.4e-70
>prophage 57
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	766458	767859	2034706		Cyanophage(100.0%)	1	NA	NA
AWI33964.1|766458_767859_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	34.3	6.9e-66
>prophage 58
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	778207	779014	2034706		Planktothrix_phage(100.0%)	1	NA	NA
AWI33971.1|778207_779014_+	polar amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.5	8.1e-27
>prophage 59
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	784197	789649	2034706	tRNA	uncultured_Caudovirales_phage(66.67%)	3	NA	NA
AWI33976.1|784197_785187_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A7IXR9	Paramecium_bursaria_Chlorella_virus	26.6	1.5e-06
AWI33977.1|785318_787412_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	72.9	7.8e-13
AWI33978.1|787534_789649_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	72.9	7.9e-13
>prophage 60
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	796620	803448	2034706		Bacteriophage(25.0%)	8	NA	NA
AWI33987.1|796620_797052_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	A0A1L2BX65	Bacteriophage	46.8	1.0e-31
AWI33988.1|797067_797538_-	transcription elongation factor GreA	NA	A0A248SJQ8	Salicola_phage	29.2	2.7e-14
AWI33989.1|797605_798739_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AWI33990.1|798728_799325_-	hypothetical protein	NA	NA	NA	NA	NA
AWI33991.1|799321_799921_-	NUDIX hydrolase	NA	NA	NA	NA	NA
AWI33992.1|799907_801131_-	endopeptidase	NA	A0A292GJG6	Xanthomonas_phage	44.4	4.6e-21
AWI33993.1|801244_802147_-	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
AWI33994.1|802155_803448_-	O-acetylhomoserine aminocarboxypropyltransferase	NA	A0A0B5JD48	Pandoravirus	25.2	1.2e-11
>prophage 61
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	815513	816242	2034706		Planktothrix_phage(100.0%)	1	NA	NA
AWI34005.1|815513_816242_-	polar amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	2.4e-33
>prophage 62
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	822781	823525	2034706		Cedratvirus(100.0%)	1	NA	NA
AWI34012.1|822781_823525_+	ABC transporter	NA	A0A285PWH2	Cedratvirus	28.2	2.1e-13
>prophage 63
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	841899	842679	2034706		Clostridium_phage(100.0%)	1	NA	NA
AWI34027.1|841899_842679_+	DNA polymerase III subunit epsilon	NA	A0A0K2SUJ2	Clostridium_phage	33.3	7.9e-19
>prophage 64
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	851120	853450	2034706	tRNA	Agrobacterium_phage(50.0%)	2	NA	NA
AWI34034.1|851120_851636_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	37.4	5.4e-08
AWI34035.1|851632_853450_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.2	2.4e-119
>prophage 65
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	856661	867358	2034706	protease	uncultured_Mediterranean_phage(33.33%)	12	NA	NA
AWI34040.1|856661_857489_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.3	8.0e-62
AWI34041.1|857499_858261_-	hypothetical protein	NA	NA	NA	NA	NA
AWI34042.1|860471_860780_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	40.7	6.1e-15
AWI34043.1|860847_861408_-	isochorismatase	NA	NA	NA	NA	NA
AWI34044.1|861470_862433_-	TIGR01212 family radical SAM protein	NA	NA	NA	NA	NA
AWI34045.1|862442_863810_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	29.0	5.8e-49
AWI34046.1|863818_864586_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
AWI34047.1|864595_865534_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	40.3	1.0e-52
AWI34048.1|865544_866015_-	hypothetical protein	NA	NA	NA	NA	NA
AWI34049.1|866045_866363_-	thiol reductase thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	36.1	5.5e-19
AWI34050.1|866443_866887_-	N utilization substance protein B	NA	NA	NA	NA	NA
AWI34051.1|866887_867358_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A1V0SE20	Indivirus	31.7	1.1e-07
>prophage 66
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	874336	875788	2034706		Klosneuvirus(100.0%)	1	NA	NA
AWI34057.1|874336_875788_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	45.1	1.4e-106
>prophage 67
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	887620	889744	2034706		uncultured_virus(100.0%)	1	NA	NA
AWI34068.1|887620_889744_+	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	30.3	3.6e-50
>prophage 68
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	892779	895635	2034706		Planktothrix_phage(50.0%)	5	NA	NA
AWI34072.1|892779_893469_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.5	7.4e-29
AWI34073.1|893465_894686_+	multidrug ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWI34074.1|894781_894916_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
AWI34075.1|894929_895262_+	ribonuclease P protein component	NA	NA	NA	NA	NA
AWI34076.1|895266_895635_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	37.9	3.0e-08
>prophage 69
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	904980	905601	2034706		Enterobacteria_phage(100.0%)	1	NA	NA
AWI34090.1|904980_905601_+	toxin	NA	A5LH52	Enterobacteria_phage	28.9	3.4e-17
>prophage 70
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	909734	912099	2034706		Staphylococcus_phage(50.0%)	3	NA	NA
AWI34094.1|909734_911381_+	DNA methyltransferase	NA	A0A2H4PQP4	Staphylococcus_phage	28.3	1.5e-38
AWI34095.1|911615_911843_+	hypothetical protein	NA	NA	NA	NA	NA
AWI35065.1|911826_912099_+	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	A0A1S5SCV8	Streptococcus_phage	45.9	3.5e-14
>prophage 71
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	916409	919484	2034706		Liberibacter_phage(100.0%)	1	NA	NA
AWI34100.1|916409_919484_+	restriction endonuclease	NA	A0A220A398	Liberibacter_phage	28.1	1.7e-69
>prophage 72
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	931988	934677	2034706		Streptococcus_phage(33.33%)	4	NA	NA
AWI35068.1|931988_932990_-	DNA (cytosine-5-)-methyltransferase	NA	Q6DMX0	Streptococcus_phage	45.1	3.4e-67
AWI34113.1|933017_933275_-	hypothetical protein	NA	NA	NA	NA	NA
AWI34114.1|933271_933865_-	HNH endonuclease	NA	A0A2I7RGT5	Vibrio_phage	40.9	1.5e-06
AWI35069.1|933861_934677_-	site-specific DNA-methyltransferase	NA	A0A0N9PB81	Sulfolobus_monocaudavirus	58.2	4.4e-81
>prophage 73
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	958216	958927	2034706		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
AWI35070.1|958216_958927_+	DNA ligase	NA	F2Y2Y2	Organic_Lake_phycodnavirus	31.5	5.7e-24
>prophage 74
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	962559	963480	2034706		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
AWI34131.1|962559_963480_+	ornithine carbamoyltransferase	NA	M1I6M4	Paramecium_bursaria_Chlorella_virus	27.2	1.3e-20
>prophage 75
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	973820	975902	2034706		uncultured_virus(100.0%)	1	NA	NA
AWI34143.1|973820_975902_+	SAM-dependent methyltransferase	NA	B3GAM1	uncultured_virus	45.0	2.0e-16
>prophage 76
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	982630	984698	2034706		Vibrio_phage(50.0%)	3	NA	NA
AWI34150.1|982630_982903_-	hypothetical protein	NA	A0A2I7RY34	Vibrio_phage	42.4	2.7e-06
AWI34151.1|983608_983929_-	hypothetical protein	NA	NA	NA	NA	NA
AWI34152.1|984092_984698_+	resolvase	NA	H2A0H0	Bacteroides_phage	33.7	2.3e-18
>prophage 77
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	998834	999446	2034706		uncultured_archaeal_virus(100.0%)	1	NA	NA
AWI34166.1|998834_999446_-	resolvase	NA	A0A1S5Y2X8	uncultured_archaeal_virus	34.6	8.4e-16
>prophage 78
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1006208	1012192	2034706		Freshwater_phage(33.33%)	6	NA	NA
AWI34180.1|1006208_1006595_-	hypothetical protein	NA	A0A1B0XUG6	Freshwater_phage	33.1	9.0e-08
AWI34181.1|1006605_1007406_-	phage recombination protein Bet	NA	NA	NA	NA	NA
AWI34182.1|1007536_1007911_-	hypothetical protein	NA	NA	NA	NA	NA
AWI34183.1|1008237_1008684_-	single-stranded DNA-binding protein	NA	A0A1B0VAF5	Salmonella_phage	38.5	8.5e-18
AWI34184.1|1008751_1008946_+	hypothetical protein	NA	NA	NA	NA	NA
AWI34185.1|1010677_1012192_-	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	54.5	2.8e-145
>prophage 79
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1018884	1019382	2034706		Streptococcus_phage(100.0%)	1	NA	NA
AWI34190.1|1018884_1019382_-	6-O-methylguanine DNA methyltransferase	NA	M1PFU9	Streptococcus_phage	50.0	6.3e-38
>prophage 80
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1023462	1025397	2034706		Streptococcus_phage(100.0%)	1	NA	NA
AWI34195.1|1023462_1025397_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	34.7	2.1e-97
>prophage 81
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1045866	1047117	2034706	protease	Bacillus_virus(100.0%)	1	NA	NA
AWI34216.1|1045866_1047117_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	52.7	3.5e-117
>prophage 82
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1053857	1054943	2034706		Mamastrovirus(100.0%)	1	NA	NA
AWI34222.1|1053857_1054943_-	dehypoxanthine futalosine cyclase	NA	A9ZMK9	Mamastrovirus	43.7	1.1e-21
>prophage 83
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1058135	1062591	2034706		Indivirus(50.0%)	4	NA	NA
AWI34225.1|1058135_1059173_-	riboflavin biosynthesis protein RibD	NA	A0A1V0SE20	Indivirus	33.0	3.7e-24
AWI34226.1|1059166_1059595_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
AWI34227.1|1059594_1059993_-	ribosome-binding factor A	NA	NA	NA	NA	NA
AWI34228.1|1059993_1062591_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	25.6	1.3e-28
>prophage 84
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1080636	1081359	2034706		Staphylococcus_phage(100.0%)	1	NA	NA
AWI34242.1|1080636_1081359_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.2	1.4e-25
>prophage 85
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1086485	1087163	2034706		Feldmannia_irregularis_virus(100.0%)	1	NA	NA
AWI34243.1|1086485_1087163_-	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	30.6	9.6e-05
>prophage 86
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1095956	1097903	2034706		Ralstonia_phage(100.0%)	1	NA	NA
AWI34253.1|1095956_1097903_+	DNA ligase (NAD(+)) LigA	NA	A0A0K2QQN8	Ralstonia_phage	37.7	1.1e-109
>prophage 87
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1108481	1114370	2034706		Tupanvirus(33.33%)	6	NA	NA
AWI34261.1|1108481_1109534_+	NAD-dependent epimerase	NA	A0A2K9L0I7	Tupanvirus	28.3	9.3e-31
AWI34262.1|1109612_1110344_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AWI34263.1|1110352_1110943_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	45.1	9.8e-38
AWI34264.1|1110951_1112178_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AWI34265.1|1112383_1112707_-	hypothetical protein	NA	NA	NA	NA	NA
AWI34266.1|1112693_1114370_-	AAA family ATPase	NA	H8ZJI5	Ostreococcus_tauri_virus	42.2	9.8e-83
>prophage 88
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1119140	1123101	2034706		Bodo_saltans_virus(50.0%)	3	NA	NA
AWI34272.1|1119140_1119614_-	peptidylprolyl isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	46.5	3.8e-16
AWI34273.1|1119824_1120547_+	hypothetical protein	NA	NA	NA	NA	NA
AWI34274.1|1120608_1123101_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.3	8.2e-102
>prophage 89
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1143152	1146119	2034706		Vibrio_phage(50.0%)	2	NA	NA
AWI34291.1|1143152_1144628_-	hypothetical protein	NA	A0A2I7RNF1	Vibrio_phage	27.1	7.1e-37
AWI34292.1|1144961_1146119_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	54.2	1.5e-119
>prophage 90
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1150642	1152556	2034706		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AWI35082.1|1150642_1152556_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	72.9	7.1e-13
>prophage 91
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1158329	1160480	2034706		Salmonella_phage(100.0%)	1	NA	NA
AWI34299.1|1158329_1160480_-	penta-phosphate guanosine-3'-pyrophosphohydrolase	NA	S4TRQ0	Salmonella_phage	48.7	1.1e-09
>prophage 92
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1168430	1169834	2034706	tRNA	Catovirus(100.0%)	1	NA	NA
AWI34310.1|1168430_1169834_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	30.2	2.0e-49
>prophage 93
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1179704	1185634	2034706		Anguillid_herpesvirus(33.33%)	5	NA	NA
AWI34320.1|1179704_1180118_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	42.7	3.1e-22
AWI34321.1|1180227_1180929_-	menaquinone biosynthesis protein	NA	NA	NA	NA	NA
AWI34322.1|1180998_1182516_-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AWI34323.1|1182515_1184132_-	bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	36.5	1.5e-48
AWI34324.1|1184128_1185634_-	anthranilate synthase component I	NA	S4VNU7	Pandoravirus	33.8	1.6e-28
>prophage 94
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1191732	1192395	2034706		Prochlorococcus_phage(100.0%)	1	NA	NA
AWI34329.1|1191732_1192395_+	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	34.6	1.2e-20
>prophage 95
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1200798	1209352	2034706	protease	uncultured_Mediterranean_phage(25.0%)	8	NA	NA
AWI34335.1|1200798_1202211_+|protease	serine protease	protease	A0A1B1IRH0	uncultured_Mediterranean_phage	38.1	1.8e-16
AWI34336.1|1202259_1203174_+	hypothetical protein	NA	NA	NA	NA	NA
AWI34337.1|1203176_1204718_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	26.9	6.6e-09
AWI34338.1|1204865_1205588_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AWI34339.1|1205587_1206193_-	hypothetical protein	NA	NA	NA	NA	NA
AWI34340.1|1206200_1208129_-	cell division protein FtsH	NA	E5EQU5	Bathycoccus_sp._RCC1105_virus	45.2	5.4e-101
AWI34341.1|1208144_1208975_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
AWI34342.1|1208977_1209352_-	two-component system response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	32.1	1.6e-09
>prophage 96
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1215914	1216781	2034706		Bacillus_virus(100.0%)	1	NA	NA
AWI34349.1|1215914_1216781_-	molybdenum ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.7	2.9e-22
>prophage 97
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1225215	1225971	2034706		Pelagibacter_phage(100.0%)	1	NA	NA
AWI34358.1|1225215_1225971_-	NAD(+) synthetase	NA	M1IPF8	Pelagibacter_phage	34.9	1.1e-22
>prophage 98
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1236936	1239112	2034706		Synechococcus_phage(50.0%)	3	NA	NA
AWI34369.1|1236936_1237455_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	40.0	1.7e-14
AWI34370.1|1237454_1238510_-	hypothetical protein	NA	NA	NA	NA	NA
AWI34371.1|1238521_1239112_-	ATP-dependent Clp endopeptidase, proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	56.6	1.4e-55
>prophage 99
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1243196	1251140	2034706		Enterobacteria_phage(33.33%)	7	NA	NA
AWI34374.1|1243196_1244426_-	polynucleotide adenylyltransferase	NA	H6X3I8	Enterobacteria_phage	45.9	5.0e-44
AWI34375.1|1244403_1244952_-	ribosomal subunit interface protein	NA	NA	NA	NA	NA
AWI34376.1|1245036_1245819_-	shikimate dehydrogenase	NA	NA	NA	NA	NA
AWI34377.1|1245818_1246577_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
AWI34378.1|1246624_1247617_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SQF5	Cyanophage	39.6	5.6e-54
AWI34379.1|1247752_1249858_+	RNA degradosome polyphosphate kinase	NA	NA	NA	NA	NA
AWI34380.1|1249883_1251140_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	43.8	3.0e-76
>prophage 100
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1263343	1264276	2034706		Catovirus(100.0%)	1	NA	NA
AWI34391.1|1263343_1264276_+	hypothetical protein	NA	A0A1V0SAH6	Catovirus	36.5	1.0e-09
>prophage 101
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1281707	1285058	2034706		Agrobacterium_phage(50.0%)	2	NA	NA
AWI34410.1|1281707_1282721_-	modification methylase	NA	A0A2L0UZL7	Agrobacterium_phage	43.2	1.7e-66
AWI35093.1|1284197_1285058_+	2,5-diketo-D-gluconic acid reductase	NA	A0A2H4PQR8	Staphylococcus_phage	37.7	1.3e-46
>prophage 102
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1290950	1295565	2034706		Pneumococcus_phage(33.33%)	7	NA	NA
AWI34419.1|1290950_1291247_+	preQ(1) synthase	NA	E7DN65	Pneumococcus_phage	61.2	4.0e-24
AWI34420.1|1291256_1291601_+	hypothetical protein	NA	NA	NA	NA	NA
AWI34421.1|1291621_1292392_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AWI34422.1|1292391_1293036_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	7.0e-21
AWI34423.1|1293045_1294113_-	elongation factor Ts	NA	NA	NA	NA	NA
AWI34424.1|1294130_1294922_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
AWI34425.1|1295175_1295565_-	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	72.4	5.5e-13
>prophage 103
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1301456	1307369	2034706		Halovirus(33.33%)	6	NA	NA
AWI34435.1|1301456_1302596_+	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	32.8	1.4e-43
AWI34436.1|1302602_1303793_+	8-amino-7-oxononanoate synthase	NA	D2TEZ5	Emiliania_huxleyi_virus	26.6	5.8e-21
AWI34437.1|1303764_1304406_+	hypothetical protein	NA	NA	NA	NA	NA
AWI34438.1|1304402_1305128_+	biotin biosynthesis protein BioC	NA	NA	NA	NA	NA
AWI34439.1|1305188_1305923_+	hypothetical protein	NA	NA	NA	NA	NA
AWI34440.1|1305932_1307369_+	replicative DNA helicase	NA	A0A1B0VG30	Salmonella_phage	37.6	1.0e-72
>prophage 104
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1321561	1322356	2034706		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
AWI34452.1|1321561_1322356_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.8	1.6e-11
>prophage 105
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1328191	1329688	2034706		Mycobacterium_phage(100.0%)	1	NA	NA
AWI34457.1|1328191_1329688_-	cell division protein FtsK	NA	G1FGP1	Mycobacterium_phage	28.1	5.8e-26
>prophage 106
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1356659	1357391	2034706		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
AWI34475.1|1356659_1357391_+	sulfate ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.8	3.6e-21
>prophage 107
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1364172	1366208	2034706		Yellowstone_lake_phycodnavirus(50.0%)	2	NA	NA
AWI34485.1|1364172_1364874_-	hypothetical protein	NA	A0A0P0YNF5	Yellowstone_lake_phycodnavirus	33.3	4.6e-10
AWI34486.1|1364870_1366208_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	31.6	3.0e-18
>prophage 108
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1384931	1391111	2034706		Bacillus_virus(33.33%)	5	NA	NA
AWI34506.1|1384931_1387250_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	36.7	8.1e-120
AWI34507.1|1387275_1388343_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	23.2	1.6e-14
AWI34508.1|1388508_1389807_-	chromosomal replication initiation protein DnaA	NA	NA	NA	NA	NA
AWI34509.1|1389997_1390507_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AWI34510.1|1390481_1391111_+	thymidylate synthase (FAD)	NA	A0A1B0XW95	Campylobacter_phage	49.8	1.2e-44
>prophage 109
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1394548	1397280	2034706		Clostridium_phage(50.0%)	2	NA	NA
AWI34515.1|1394548_1394986_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	36.6	1.6e-16
AWI34516.1|1395186_1397280_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	31.6	4.0e-09
>prophage 110
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1435279	1448140	2034706		Moraxella_phage(16.67%)	10	NA	NA
AWI35101.1|1435279_1437682_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	39.8	4.1e-143
AWI34553.1|1437681_1438299_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	36.0	1.1e-20
AWI35102.1|1438342_1439512_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	27.0	1.9e-24
AWI34554.1|1439513_1440008_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AWI34555.1|1440146_1441193_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
AWI34556.1|1441384_1443958_+	ATP-dependent chaperone ClpB	NA	K4FB40	Cronobacter_phage	36.2	1.0e-118
AWI34557.1|1444070_1445126_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AWI34558.1|1445167_1446436_+	peptidase M16	NA	M1NN74	Moumouvirus	26.7	1.8e-33
AWI34559.1|1446446_1447361_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AWI34560.1|1447357_1448140_+	7-alpha-hydroxysteroid dehydrogenase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	23.5	8.2e-08
>prophage 111
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1453439	1457082	2034706		Tupanvirus(50.0%)	5	NA	NA
AWI35103.1|1453439_1454153_+	cobalt ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	33.8	1.3e-15
AWI34568.1|1454170_1454452_-	hypothetical protein	NA	NA	NA	NA	NA
AWI34569.1|1454462_1455854_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AWI34570.1|1455881_1456334_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
AWI34571.1|1456323_1457082_-	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	46.3	3.2e-57
>prophage 112
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1461376	1462285	2034706		Klosneuvirus(100.0%)	1	NA	NA
AWI34576.1|1461376_1462285_+	hypothetical protein	NA	A0A1V0SJF4	Klosneuvirus	31.2	4.0e-14
>prophage 113
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1482447	1486189	2034706		Staphylococcus_phage(33.33%)	6	NA	NA
AWI34585.1|1482447_1483224_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	23.8	2.2e-13
AWI34586.1|1483906_1484134_-	hypothetical protein	NA	NA	NA	NA	NA
AWI34587.1|1484226_1484793_-	D,D-heptose 1,7-bisphosphate phosphatase	NA	NA	NA	NA	NA
AWI34588.1|1484793_1485339_-	hypothetical protein	NA	A0A2P1CKM9	Pantoea_phage	31.7	1.4e-06
AWI34589.1|1485434_1485692_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
AWI34590.1|1485703_1486189_-	single-stranded DNA-binding protein	NA	A0A0A0P1Q9	Enterobacteria_phage	45.4	3.8e-19
>prophage 114
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1491974	1493075	2034706		Catovirus(100.0%)	1	NA	NA
AWI34595.1|1491974_1493075_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	32.2	3.5e-28
>prophage 115
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1498349	1499597	2034706		Megavirus(100.0%)	1	NA	NA
AWI34601.1|1498349_1499597_+	adenylosuccinate synthase	NA	A0A2P1EKE7	Megavirus	36.4	3.2e-70
>prophage 116
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1510260	1510722	2034706		Pneumococcus_phage(100.0%)	1	NA	NA
AWI34612.1|1510260_1510722_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	65.8	1.1e-39
>prophage 117
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1515689	1524176	2034706		Acinetobacter_phage(16.67%)	6	NA	NA
AWI34616.1|1515689_1516256_-	glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	38.5	1.7e-26
AWI34617.1|1516230_1518003_-	bifunctional aminodeoxychorismate synthase component I/aminotransferase	NA	A0A0B5J984	Pandoravirus	28.4	1.1e-28
AWI34618.1|1518003_1519998_-	hypothetical protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	1.3e-09
AWI34619.1|1520048_1521644_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.1	1.3e-52
AWI34620.1|1521656_1523177_-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	NA	A0A0K0KVL9	Prochlorococcus_phage	50.0	2.2e-25
AWI34621.1|1523177_1524176_-	ADP-glyceromanno-heptose 6-epimerase	NA	A0A1V0SKV4	Klosneuvirus	28.7	8.0e-24
>prophage 118
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1530561	1531362	2034706		Staphylococcus_phage(100.0%)	1	NA	NA
AWI35104.1|1530561_1531362_+	glutathione ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.8	3.1e-10
>prophage 119
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1537505	1539419	2034706		Hokovirus(100.0%)	1	NA	NA
AWI34635.1|1537505_1539419_-	ABC transporter ATP-binding protein	NA	A0A1V0SGN0	Hokovirus	28.4	1.2e-47
>prophage 120
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1549710	1554897	2034706	tRNA	Lake_Baikal_phage(33.33%)	3	NA	NA
AWI34641.1|1549710_1550691_-	iron-sulfur cluster assembly scaffold protein NifU	NA	A0A2H4N7M4	Lake_Baikal_phage	40.7	3.8e-18
AWI34642.1|1550701_1551874_-	cysteine desulfurase, NifS family	NA	A0A0H3TPH2	Faustovirus	30.2	5.0e-41
AWI34643.1|1552125_1554897_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	26.4	1.8e-73
>prophage 121
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1560105	1560666	2034706		Pseudomonas_phage(100.0%)	1	NA	NA
AWI34649.1|1560105_1560666_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	66.5	4.4e-64
>prophage 122
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1573826	1575749	2034706	tRNA	Klosneuvirus(100.0%)	1	NA	NA
AWI34666.1|1573826_1575749_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	37.9	3.8e-91
>prophage 123
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1585131	1586259	2034706	tRNA	uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AWI34679.1|1585131_1586259_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	43.2	4.0e-80
>prophage 124
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1593549	1594275	2034706		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AWI34688.1|1593549_1594275_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	33.1	1.0e-28
>prophage 125
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1616759	1617206	2034706		Salmonella_phage(100.0%)	1	NA	NA
AWI34705.1|1616759_1617206_-	single-stranded DNA-binding protein	NA	A0A1B0VAF5	Salmonella_phage	38.5	8.5e-18
>prophage 126
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1623739	1624495	2034706		Planktothrix_phage(100.0%)	1	NA	NA
AWI34714.1|1623739_1624495_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.7	2.1e-16
>prophage 127
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1629392	1631318	2034706		Enterobacteria_phage(50.0%)	2	NA	NA
AWI34719.1|1629392_1630262_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	60.1	1.8e-96
AWI34720.1|1630301_1631318_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	47.4	4.0e-79
>prophage 128
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1637704	1638796	2034706		Tupanvirus(100.0%)	1	NA	NA
AWI34729.1|1637704_1638796_+	aminotransferase	NA	A0A2K9L470	Tupanvirus	29.2	1.1e-31
>prophage 129
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1643088	1644594	2034706		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
AWI34734.1|1643088_1644594_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.8	7.6e-10
>prophage 130
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1651258	1652458	2034706		Klosneuvirus(100.0%)	1	NA	NA
AWI34740.1|1651258_1652458_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	28.3	3.1e-14
>prophage 131
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1655701	1671773	2034706	tRNA	Tupanvirus(50.0%)	8	NA	NA
AWI35111.1|1655701_1664359_+	DNA-directed RNA polymerase subunit beta/beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.5	2.7e-67
AWI34748.1|1664453_1664840_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
AWI34749.1|1664856_1665324_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
AWI34750.1|1665418_1667500_+	elongation factor G	NA	A0A1S5SF82	Streptococcus_phage	26.9	4.5e-61
AWI34751.1|1667510_1668680_-	SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	39.9	5.4e-56
AWI34752.1|1668898_1670254_+	DNA recombination protein RmuC	NA	NA	NA	NA	NA
AWI34753.1|1670258_1670639_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA	NA
AWI34754.1|1670777_1671773_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.2	5.0e-34
>prophage 132
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1678496	1691117	2034706		Paramecium_bursaria_Chlorella_virus(20.0%)	9	NA	NA
AWI35113.1|1678496_1680080_+	phosphoglycerate dehydrogenase	NA	M1I4S0	Paramecium_bursaria_Chlorella_virus	28.9	5.9e-21
AWI34759.1|1680657_1681083_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AWI34760.1|1681166_1682009_-	IroE protein	NA	NA	NA	NA	NA
AWI34761.1|1682681_1685606_+	DEAD/DEAH box helicase	NA	Q1MVP1	Enterobacteria_phage	26.5	5.2e-55
AWI35114.1|1685670_1687656_+	restriction endonuclease	NA	A0A2K5B2C1	Erysipelothrix_phage	34.8	2.0e-50
AWI34762.1|1687764_1688088_-	hypothetical protein	NA	A0A218MNG8	uncultured_virus	35.2	8.6e-12
AWI34763.1|1688288_1689083_-	hypothetical protein	NA	NA	NA	NA	NA
AWI34764.1|1689293_1689884_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
AWI34765.1|1690202_1691117_-	iron ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.0	2.2e-20
>prophage 133
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1707065	1713975	2034706		Staphylococcus_phage(25.0%)	7	NA	NA
AWI34780.1|1707065_1708088_+	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	37.8	1.6e-56
AWI34781.1|1708093_1708618_-	hypothetical protein	NA	NA	NA	NA	NA
AWI34782.1|1708656_1709358_-	hypothetical protein	NA	NA	NA	NA	NA
AWI34783.1|1709366_1709999_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	37.6	1.5e-20
AWI35116.1|1709998_1710724_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
AWI34784.1|1710710_1711736_-	ribonucleotide-diphosphate reductase subunit beta	NA	U5PWJ8	Bacillus_phage	35.2	1.5e-54
AWI34785.1|1711857_1713975_+	ATPase	NA	A0A218MNH6	uncultured_virus	29.8	2.9e-79
>prophage 134
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1725565	1734873	2034706		Clostridium_phage(25.0%)	8	NA	NA
AWI34799.1|1725565_1726369_-	peptidase M24	NA	Q8SBN9	Clostridium_phage	42.9	1.2e-14
AWI34800.1|1726639_1727194_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AWI34801.1|1727214_1729095_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	48.4	2.2e-144
AWI34802.1|1729809_1731537_-	ATP-binding protein	NA	A0A0R6PCP6	Moraxella_phage	28.6	1.8e-18
AWI35117.1|1731553_1731925_-	hypothetical protein	NA	NA	NA	NA	NA
AWI34803.1|1732001_1732889_-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
AWI34804.1|1732888_1733464_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AWI34805.1|1733472_1734873_-	peptidase	NA	A0A222YU16	Streptomyces_phage	35.7	1.8e-05
>prophage 135
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1738338	1739340	2034706		uncultured_virus(100.0%)	1	NA	NA
AWI34809.1|1738338_1739340_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	33.3	1.6e-08
>prophage 136
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1763942	1767352	2034706		Planktothrix_phage(50.0%)	3	NA	NA
AWI34835.1|1763942_1764677_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	6.5e-31
AWI34836.1|1765388_1766186_-	L-cystine-binding protein tcyA	NA	NA	NA	NA	NA
AWI34837.1|1766191_1767352_-	cystathionine gamma-synthase	NA	A0A0B5JD48	Pandoravirus	30.3	3.7e-20
>prophage 137
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1794053	1796240	2034706		Tupanvirus(100.0%)	1	NA	NA
AWI35120.1|1794053_1796240_+	DNA topoisomerase I	NA	A0A2K9L1Q2	Tupanvirus	36.4	1.2e-88
>prophage 138
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1799902	1803219	2034706		Tetraselmis_virus(100.0%)	4	NA	NA
AWI34863.1|1799902_1800397_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.6	1.8e-24
AWI34864.1|1800405_1800885_+	hypothetical protein	NA	NA	NA	NA	NA
AWI34865.1|1800967_1802269_+	sodium:proton antiporter	NA	NA	NA	NA	NA
AWI34866.1|1802277_1803219_+	arabinose-5-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	33.9	1.6e-37
>prophage 139
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1807094	1814376	2034706	tRNA	Planktothrix_phage(33.33%)	6	NA	NA
AWI34869.1|1807094_1808672_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.2	2.9e-20
AWI34870.1|1808668_1809214_+	hypothetical protein	NA	NA	NA	NA	NA
AWI34871.1|1810453_1810957_-	YajQ family cyclic di-GMP-binding protein	NA	NA	NA	NA	NA
AWI34872.1|1811061_1811604_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AWI34873.1|1811614_1813123_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	39.3	1.4e-88
AWI34874.1|1813125_1814376_+	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	51.3	1.9e-99
>prophage 140
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1819684	1822179	2034706	tRNA	Catovirus(50.0%)	3	NA	NA
AWI34881.1|1819684_1820998_-|tRNA	histidine--tRNA ligase	tRNA	A0A1V0S921	Catovirus	27.0	5.6e-33
AWI34882.1|1821138_1821342_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
AWI34883.1|1821354_1822179_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	33.0	8.3e-27
>prophage 141
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1825777	1840199	2034706	protease	uncultured_virus(16.67%)	14	NA	NA
AWI35123.1|1825777_1828183_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	30.0	1.6e-81
AWI34887.1|1828476_1829376_+	ABC transporter	NA	NA	NA	NA	NA
AWI34888.1|1829422_1829977_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	38.4	5.1e-28
AWI34889.1|1829987_1830326_-	hypothetical protein	NA	NA	NA	NA	NA
AWI34890.1|1830337_1830760_-	ribose 5-phosphate isomerase B	NA	NA	NA	NA	NA
AWI34891.1|1830769_1831453_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
AWI34892.1|1831452_1832253_-	signal peptidase I	NA	NA	NA	NA	NA
AWI34893.1|1832269_1833118_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	38.3	6.8e-40
AWI35124.1|1833200_1833521_+	cytochrome C oxidase subunit III	NA	NA	NA	NA	NA
AWI34894.1|1833525_1834161_+	Rossman fold protein, TIGR00730 family	NA	A0A1D8KU27	Synechococcus_phage	35.0	3.4e-20
AWI34895.1|1834240_1835419_+	recombinase RarA	NA	G3MBE0	Bacillus_virus	36.0	2.3e-62
AWI34896.1|1835454_1835739_-	ferredoxin	NA	NA	NA	NA	NA
AWI34897.1|1837164_1837509_+	ribosome silencing factor RsfS	NA	NA	NA	NA	NA
AWI34898.1|1838048_1840199_+	hypothetical protein	NA	E3T5F4	Cafeteria_roenbergensis_virus	38.4	2.0e-24
>prophage 142
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1843428	1854812	2034706		Vibrio_phage(50.0%)	5	NA	NA
AWI34903.1|1843428_1844220_-	hypothetical protein	NA	A0A2I7QSC9	Vibrio_phage	46.8	1.4e-31
AWI34904.1|1844366_1844774_+	hypothetical protein	NA	NA	NA	NA	NA
AWI34905.1|1845155_1845428_-	hypothetical protein	NA	NA	NA	NA	NA
AWI34906.1|1845405_1845984_-	hypothetical protein	NA	NA	NA	NA	NA
AWI34907.1|1846247_1854812_-	hypothetical protein	NA	A0A1S5RG15	Helicobacter_phage	29.5	4.3e-118
>prophage 143
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1863131	1866271	2034706		Planktothrix_phage(50.0%)	4	NA	NA
AWI34916.1|1863131_1864088_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.4	2.8e-26
AWI34917.1|1864097_1864748_+	methionine ABC transporter permease	NA	NA	NA	NA	NA
AWI34918.1|1864770_1865589_+	methionine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWI34919.1|1865596_1866271_-	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	38.5	8.3e-17
>prophage 144
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1872659	1875609	2034706		Cafeteria_roenbergensis_virus(33.33%)	4	NA	NA
AWI34926.1|1872659_1873154_-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	NA	E3T535	Cafeteria_roenbergensis_virus	38.0	1.2e-20
AWI34927.1|1873150_1873723_-	imidazoleglycerol-phosphate dehydratase	NA	NA	NA	NA	NA
AWI34928.1|1873725_1874535_-	septal ring lytic transglycosylase RlpA family lipoprotein	NA	F5B3X9	Synechococcus_phage	61.9	3.6e-22
AWI34929.1|1874541_1875609_-	lytic transglycosylase	NA	A0A218M4G6	Pasteurella_phage	33.6	3.9e-08
>prophage 145
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1884325	1890146	2034706		Paramecium_bursaria_Chlorella_virus(33.33%)	5	NA	NA
AWI34938.1|1884325_1886113_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1I9J5	Paramecium_bursaria_Chlorella_virus	37.2	6.5e-93
AWI34939.1|1886265_1887399_+	hypothetical protein	NA	NA	NA	NA	NA
AWI34940.1|1887391_1888765_+	cytochrome	NA	A0A2I2L481	Orpheovirus	26.6	1.5e-33
AWI34941.1|1888772_1889126_+	hypothetical protein	NA	NA	NA	NA	NA
AWI34942.1|1889135_1890146_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	36.0	5.6e-49
>prophage 146
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1894245	1910291	2034706		Anomala_cuprea_entomopoxvirus(16.67%)	12	NA	NA
AWI34946.1|1894245_1894905_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.6	5.0e-06
AWI34947.1|1894901_1895666_-	capsule biosynthesis protein	NA	NA	NA	NA	NA
AWI34948.1|1895811_1896921_+	porin	NA	NA	NA	NA	NA
AWI34949.1|1896942_1897800_-	polyphosphate kinase 2	NA	NA	NA	NA	NA
AWI34950.1|1897876_1898896_+	competence protein	NA	B5TK85	Pseudomonas_phage	45.3	2.8e-16
AWI35127.1|1899625_1900213_-	hypothetical protein	NA	NA	NA	NA	NA
AWI34951.1|1900396_1903504_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	45.1	2.4e-82
AWI34952.1|1903822_1905268_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AWI34953.1|1905550_1906297_-	accessory colonization factor AcfC	NA	NA	NA	NA	NA
AWI34954.1|1906458_1908246_+	Xaa-Pro aminopeptidase	NA	A0A0P0I8D7	Acinetobacter_phage	49.1	1.8e-167
AWI34955.1|1908399_1909776_-	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	39.1	2.2e-11
AWI34956.1|1909790_1910291_-	histidine kinase	NA	A0A1B0V854	Salmonella_phage	44.7	3.4e-23
>prophage 147
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1916991	1917756	2034706		Moumouvirus(100.0%)	1	NA	NA
AWI34961.1|1916991_1917756_-	3-hydroxybutyrate dehydrogenase	NA	A0A2P1ELN2	Moumouvirus	24.5	3.6e-08
>prophage 148
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1952875	1954759	2034706		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AWI34971.1|1952875_1954759_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.1	1.9e-103
>prophage 149
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1959935	1960187	2034706		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AWI34976.1|1959935_1960187_-	ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	49.4	9.9e-16
>prophage 150
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1985581	1988789	2034706		Only_Syngen_Nebraska_virus(50.0%)	2	NA	NA
AWI34994.1|1985581_1987213_+	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	50.0	5.9e-141
AWI34995.1|1987193_1988789_+	single-stranded-DNA-specific exonuclease RecJ	NA	A0A0R6PDC6	Moraxella_phage	41.6	5.3e-46
>prophage 151
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	1997901	1999002	2034706		Faustovirus(100.0%)	1	NA	NA
AWI35002.1|1997901_1999002_-	histidinol-phosphate transaminase	NA	A0A1X7QHI1	Faustovirus	27.2	1.5e-18
>prophage 152
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	2002364	2004630	2034706		Escherichia_phage(50.0%)	2	NA	NA
AWI35006.1|2002364_2003045_-	serine/threonine protein phosphatase	NA	A0A222YWF0	Escherichia_phage	30.0	4.6e-15
AWI35007.1|2003046_2004630_-	inorganic phosphate transporter	NA	G9E3M1	Emiliania_huxleyi_virus	37.4	1.6e-18
>prophage 153
CP021886	Helicobacter apodemus strain SCJK1 chromosome, complete genome	2034706	2026621	2031675	2034706	tRNA	Paramecium_bursaria_Chlorella_virus(50.0%)	3	NA	NA
AWI35028.1|2026621_2029282_+	calcium-translocating P-type ATPase, PMCA-type	NA	M1HX51	Paramecium_bursaria_Chlorella_virus	33.0	3.2e-104
AWI35029.1|2029273_2030269_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AWI35030.1|2030403_2031675_+	hypothetical protein	NA	A0A2H4UUV2	Bodo_saltans_virus	33.2	1.8e-28
