assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003112165.1_ASM311216v1	CP028112	Escherichia coli O103 str. RM8385 chromosome, complete genome	1	1589229-1589352	1	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,c2c9_V-U4,cas3,PrimPol,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,PrimPol,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	NA,NA|75aa|down_7|CP028112.1_1597937_1598162_-,NA|30aa|down_8|CP028112.1_1598248_1598338_+	NA|471aa|up_9|CP028112.1_1578682_1580095_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|CP028112.1_1580651_1580861_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|CP028112.1_1581316_1581943_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|CP028112.1_1581963_1584066_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|CP028112.1_1584069_1584717_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|CP028112.1_1584780_1585449_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|CP028112.1_1585445_1586231_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|CP028112.1_1586234_1587047_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|CP028112.1_1587058_1588663_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|CP028112.1_1588788_1589094_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|CP028112.1_1589666_1590923_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|CP028112.1_1590963_1592337_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|CP028112.1_1592551_1593193_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|CP028112.1_1593232_1594381_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|CP028112.1_1594671_1595883_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|CP028112.1_1595995_1596928_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|CP028112.1_1596924_1597950_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|CP028112.1_1597937_1598162_-	NA	NA|30aa|down_8|CP028112.1_1598248_1598338_+	NA	NA|390aa|down_9|CP028112.1_1598503_1599673_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCA_003112165.1_ASM311216v1	CP028112	Escherichia coli O103 str. RM8385 chromosome, complete genome	2	2274945-2275148	1	PILER-CR	no		DEDDh,DinG,c2c9_V-U4,cas3,PrimPol,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	Orphan	TCTCCCCACTTTTACTCCCCACTTTTT	27	1	1	2275082-2275139	CP028112.1_864837-864894	NA	2	2	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,PrimPol,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	NA|101aa|up_5|CP028112.1_2273335_2273638_-,NA|43aa|up_4|CP028112.1_2273600_2273729_-,NA|63aa|up_1|CP028112.1_2274390_2274579_-,NA|84aa|up_0|CP028112.1_2274692_2274944_-,NA|78aa|down_1|CP028112.1_2276845_2277079_-,NA|74aa|down_2|CP028112.1_2277080_2277302_-,NA|122aa|down_3|CP028112.1_2277294_2277660_-,NA|75aa|down_4|CP028112.1_2277652_2277877_-,NA|77aa|down_5|CP028112.1_2277866_2278097_-	NA|113aa|up_9|CP028112.1_2269726_2270065_-	COG5614, COG5614, Bacteriophage head-tail adaptor [General function prediction only]	NA|404aa|up_8|CP028112.1_2270061_2271273_-	COG4695, COG4695, Phage-related protein [Function unknown]	NA|191aa|up_7|CP028112.1_2271274_2271847_-	COG3740, COG3740, Phage head maturation protease [General function prediction only]	NA|386aa|up_6|CP028112.1_2271886_2273044_-	COG4653, COG4653, Predicted phage phi-C31 gp36 major capsid-like protein [General function prediction only]	NA|101aa|up_5|CP028112.1_2273335_2273638_-	NA	NA|43aa|up_4|CP028112.1_2273600_2273729_-	NA	NA|91aa|up_3|CP028112.1_2273685_2273958_-	pfam06069, PerC, PerC transcriptional activator	NA|137aa|up_2|CP028112.1_2273970_2274381_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|63aa|up_1|CP028112.1_2274390_2274579_-	NA	NA|84aa|up_0|CP028112.1_2274692_2274944_-	NA	NA|100aa|down_0|CP028112.1_2276540_2276840_-	pfam13973, DUF4222, Domain of unknown function (DUF4222)	NA|78aa|down_1|CP028112.1_2276845_2277079_-	NA	NA|74aa|down_2|CP028112.1_2277080_2277302_-	NA	NA|122aa|down_3|CP028112.1_2277294_2277660_-	NA	NA|75aa|down_4|CP028112.1_2277652_2277877_-	NA	NA|77aa|down_5|CP028112.1_2277866_2278097_-	NA	NA|426aa|down_6|CP028112.1_2278093_2279371_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|63aa|down_7|CP028112.1_2279423_2279612_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|410aa|down_8|CP028112.1_2279976_2281206_-	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain	NA|374aa|down_9|CP028112.1_2281454_2282576_+	COG2850, COG2850, Uncharacterized conserved protein [Function unknown]
GCA_003112165.1_ASM311216v1	CP028112	Escherichia coli O103 str. RM8385 chromosome, complete genome	4	2919296-2919440	3	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,PrimPol,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,PrimPol,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	NA|186aa|up_9|CP028112.1_2913519_2914077_+,NA|206aa|up_7|CP028112.1_2914632_2915250_+,NA|56aa|up_4|CP028112.1_2915898_2916066_+,NA|115aa|up_3|CP028112.1_2916094_2916439_+,NA	NA|186aa|up_9|CP028112.1_2913519_2914077_+	NA	NA|186aa|up_8|CP028112.1_2914073_2914631_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|206aa|up_7|CP028112.1_2914632_2915250_+	NA	NA|101aa|up_6|CP028112.1_2915246_2915549_+	TIGR03655, hypothetical_protein_VT2-Sap32, restriction alleviation protein, Lar family	NA|95aa|up_5|CP028112.1_2915541_2915826_+	smart01022, ASCH, The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain	NA|56aa|up_4|CP028112.1_2915898_2916066_+	NA	NA|115aa|up_3|CP028112.1_2916094_2916439_+	NA	NA|73aa|up_2|CP028112.1_2916545_2916764_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|CP028112.1_2916741_2917812_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|CP028112.1_2917946_2919230_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|CP028112.1_2919463_2921725_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|CP028112.1_2921907_2923341_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|CP028112.1_2923416_2924469_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|CP028112.1_2924652_2925606_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|CP028112.1_2925646_2926642_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|CP028112.1_2926796_2927615_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|CP028112.1_2927615_2928674_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|CP028112.1_2928676_2929366_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|CP028112.1_2929365_2930139_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|CP028112.1_2930304_2930454_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCA_003112165.1_ASM311216v1	CP028112	Escherichia coli O103 str. RM8385 chromosome, complete genome	5	3616057-3616573	2,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,c2c9_V-U4,cas3,PrimPol,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	TypeI-E	DEDDh,DinG,c2c9_V-U4,cas3,PrimPol,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|CP028112.1_3607869_3608631_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|CP028112.1_3608611_3609661_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|CP028112.1_3609657_3610137_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|CP028112.1_3610136_3610847_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|CP028112.1_3610865_3611177_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|CP028112.1_3611370_3611694_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|CP028112.1_3611743_3612349_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|CP028112.1_3612348_3613776_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|CP028112.1_3613777_3614686_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|CP028112.1_3614937_3615975_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|CP028112.1_3616669_3616963_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|CP028112.1_3616962_3617883_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|249aa|down_2|CP028112.1_3618511_3619258_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_3|CP028112.1_3619268_3620324_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_4|CP028112.1_3620335_3620875_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_5|CP028112.1_3620871_3622434_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_6|CP028112.1_3622531_3625231_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_7|CP028112.1_3625424_3625577_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_8|CP028112.1_3625841_3626576_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|CP028112.1_3626649_3628362_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCA_003112165.1_ASM311216v1	CP028112	Escherichia coli O103 str. RM8385 chromosome, complete genome	6	3642275-3642486	5,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,c2c9_V-U4,cas3,PrimPol,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	3,3,2	3	Unclear	DEDDh,DinG,c2c9_V-U4,cas3,PrimPol,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	NA,NA|47aa|down_1|CP028112.1_3643635_3643776_+	NA|87aa|up_9|CP028112.1_3632181_3632442_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_8|CP028112.1_3632458_3633034_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_7|CP028112.1_3633181_3634042_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_6|CP028112.1_3634038_3634818_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_5|CP028112.1_3634795_3636133_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_4|CP028112.1_3636226_3637681_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|227aa|up_3|CP028112.1_3637750_3638431_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|32aa|up_2|CP028112.1_3638440_3638536_-	PRK06935, PRK06935, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA|426aa|up_1|CP028112.1_3638853_3640131_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|CP028112.1_3640157_3641636_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|CP028112.1_3642825_3643497_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|CP028112.1_3643635_3643776_+	NA	NA|291aa|down_2|CP028112.1_3643789_3644662_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|CP028112.1_3644721_3646020_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|CP028112.1_3646107_3647745_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|CP028112.1_3647972_3648764_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|CP028112.1_3648834_3649170_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|CP028112.1_3649169_3649418_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|CP028112.1_3649495_3651730_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|CP028112.1_3651777_3653079_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCA_003112165.1_ASM311216v1	CP028112	Escherichia coli O103 str. RM8385 chromosome, complete genome	7	5454536-5454682	6	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,PrimPol,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	Orphan	GTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	51	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,PrimPol,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	NA|504aa|up_6|CP028112.1_5445787_5447299_+,NA|36aa|up_5|CP028112.1_5447323_5447431_+,NA|529aa|down_7|CP028112.1_5464375_5465962_-,NA|40aa|down_8|CP028112.1_5466170_5466290_-	NA|238aa|up_9|CP028112.1_5443691_5444405_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|CP028112.1_5444474_5445068_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|CP028112.1_5445212_5445665_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|504aa|up_6|CP028112.1_5445787_5447299_+	NA	NA|36aa|up_5|CP028112.1_5447323_5447431_+	NA	NA|338aa|up_4|CP028112.1_5447483_5448497_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_3|CP028112.1_5448658_5449075_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_2|CP028112.1_5449120_5449624_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|952aa|up_1|CP028112.1_5451066_5453922_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|CP028112.1_5453921_5454365_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|CP028112.1_5454718_5456230_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|CP028112.1_5456496_5457597_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|CP028112.1_5457596_5458679_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|CP028112.1_5458797_5460300_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|CP028112.1_5460429_5461449_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|421aa|down_5|CP028112.1_5461892_5463155_+	PRK09692, PRK09692, integrase; Provisional	NA|280aa|down_6|CP028112.1_5463398_5464238_-	PRK11001, mtlR, MltR family transcriptional regulator	NA|529aa|down_7|CP028112.1_5464375_5465962_-	NA	NA|40aa|down_8|CP028112.1_5466170_5466290_-	NA	NA|226aa|down_9|CP028112.1_5466251_5466929_+	pfam01527, HTH_Tnp_1, Transposase
