assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003130795.1_ASM313079v1	CP029356	Azospirillum thiophilum strain CFH 70021 plasmid unnamed1	1	343675-343844	1	PILER-CR	no		csa3,RT,cas9,cas1,cas2	Orphan	GGCCTTCCACAAGACTACGCA	21	0	0	NA	NA	NA	2	2	Orphan	csb2gr5,cas7,cas8u1,cas3,RT,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas9,WYL	NA|380aa|up_5|CP029356.1_337370_338510_+,NA|125aa|down_9|CP029356.1_355058_355433_-	NA|573aa|up_9|CP029356.1_331581_333300_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|347aa|up_8|CP029356.1_333344_334385_-	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter	NA|284aa|up_7|CP029356.1_334401_335253_-	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]	NA|338aa|up_6|CP029356.1_336131_337145_-	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|380aa|up_5|CP029356.1_337370_338510_+	NA	NA|151aa|up_4|CP029356.1_338609_339062_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|211aa|up_3|CP029356.1_339406_340039_+	cd07737, YcbL-like_MBL-fold, Salmonella enterica serovar typhimurium YcbL and related proteins; MBL-fold metallo hydrolase domain	NA|287aa|up_2|CP029356.1_340134_340995_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|330aa|up_1|CP029356.1_340981_341971_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|316aa|up_0|CP029356.1_342495_343443_+	pfam04796, RepA_C, Plasmid encoded RepA protein	NA|371aa|down_0|CP029356.1_344261_345374_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|349aa|down_1|CP029356.1_345441_346488_+	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold	NA|417aa|down_2|CP029356.1_346644_347895_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|246aa|down_3|CP029356.1_347981_348719_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|563aa|down_4|CP029356.1_348868_350557_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|189aa|down_5|CP029356.1_350601_351168_-	PRK09943, PRK09943, HTH-type transcriptional regulator PuuR	NA|486aa|down_6|CP029356.1_351324_352782_+	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|429aa|down_7|CP029356.1_352810_354097_+	PRK07495, PRK07495, 4-aminobutyrate--2-oxoglutarate transaminase	NA|304aa|down_8|CP029356.1_354137_355049_+	pfam00892, EamA, EamA-like transporter family	NA|125aa|down_9|CP029356.1_355058_355433_-	NA
GCA_003130795.1_ASM313079v1	CP029356	Azospirillum thiophilum strain CFH 70021 plasmid unnamed1	2	517508-517846	1,2,1	CRT,PILER-CR,CRISPRCasFinder	no		csa3,RT,cas9,cas1,cas2	Orphan	GCTTCAATGAGGCCTGGGCATTACTGCCCAGGAAGAC,GTCTT--------CCTGGGCAGTAATGCCCAGGCCTCATTGAAGC,GCTTCAATGAGGCCTGGGCATTACTGCCCAGGAAGAC	37,45,37	0	0	NA	NA	NA:NA:NA	4,3,3	4	Orphan	csb2gr5,cas7,cas8u1,cas3,RT,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas9,WYL	NA,NA|70aa|down_3|CP029356.1_528549_528759_-	NA|196aa|up_9|CP029356.1_505786_506374_-	COG1510, COG1510, Predicted transcriptional regulators [Transcription]	NA|360aa|up_8|CP029356.1_506553_507633_-	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|474aa|up_7|CP029356.1_507806_509228_-	TIGR00908, putative_ethanolamine_permease, ethanolamine permease	NA|257aa|up_6|CP029356.1_509307_510078_-	PRK05465, PRK05465, ethanolamine ammonia-lyase subunit EutC	NA|465aa|up_5|CP029356.1_510074_511469_-	PRK15067, PRK15067, ethanolamine ammonia-lyase subunit EutB	NA|209aa|up_4|CP029356.1_511673_512300_-	PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|291aa|up_3|CP029356.1_512499_513372_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|495aa|up_2|CP029356.1_513368_514853_-	NF033203, entero_EhxA, enterohemolysin EhxA	NA|266aa|up_1|CP029356.1_515065_515863_-	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|414aa|up_0|CP029356.1_515993_517235_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|355aa|down_0|CP029356.1_519249_520314_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|688aa|down_1|CP029356.1_525595_527659_+	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]	NA|194aa|down_2|CP029356.1_527681_528263_-	PRK05417, PRK05417, glutathione-dependent formaldehyde-activating enzyme; Provisional	NA|70aa|down_3|CP029356.1_528549_528759_-	NA	NA|483aa|down_4|CP029356.1_529720_531169_+	cd13887, CuRO_2_MCO_like_2, The second cupredoxin domain of uncharacterized multicopper oxidase	NA|76aa|down_5|CP029356.1_531191_531419_-	pfam04102, SlyX, SlyX	NA|343aa|down_6|CP029356.1_531470_532499_-	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]	NA|312aa|down_7|CP029356.1_534255_535191_-	cd13547, PBP2_Fbp_like_2, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|431aa|down_8|CP029356.1_535451_536744_-	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|316aa|down_9|CP029356.1_537326_538274_-	cd19081, AKR_AKR9C1, AKR9C family of aldo-keto reductase (AKR)
GCA_003130795.1_ASM313079v1	CP029356	Azospirillum thiophilum strain CFH 70021 plasmid unnamed1	3	666726-668743	3,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2	csa3,RT,cas9,cas1,cas2	Type II-A, or Type II-C?,Type II-C,Type II-B, Type II-B	ATTGTAGCCGATGGGAAACCGCGGTCCAGCCGCAAC,ATTGTAGCCGATGGGAAACCGCGGTCCAGCCGCAAC,ATTGTAGCCGATGGGAAACCGCGGTCCAGCCGCAAC	36,36,36	0	0	NA	NA	NA:NA:NA	30,30,30	30	TypeII-A,orTypeII-C?,TypeII-C,TypeII-B,TypeII-B	csb2gr5,cas7,cas8u1,cas3,RT,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas9,WYL	NA|132aa|up_5|CP029356.1_655715_656111_-,NA	NA|229aa|up_9|CP029356.1_640236_640923_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|546aa|up_8|CP029356.1_640985_642623_-	PRK15389, PRK15389, fumarate hydratase; Provisional	NA|1393aa|up_7|CP029356.1_642839_647018_-	cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)	NA|670aa|up_6|CP029356.1_653694_655704_+	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	NA|132aa|up_5|CP029356.1_655715_656111_-	NA	NA|394aa|up_4|CP029356.1_656181_657362_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|123aa|up_3|CP029356.1_657786_658155_-	pfam01527, HTH_Tnp_1, Transposase	cas9|798aa|up_2|CP029356.1_662959_665353_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|321aa|up_1|CP029356.1_665349_666312_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|102aa|up_0|CP029356.1_666345_666651_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|402aa|down_0|CP029356.1_668824_670030_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|356aa|down_1|CP029356.1_670060_671128_-	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|267aa|down_2|CP029356.1_671091_671892_-	PRK06208, PRK06208, class II aldolase/adducin family protein	NA|376aa|down_3|CP029356.1_671972_673100_-	cd01094, Alkanesulfonate_monoxygenase, Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite	NA|329aa|down_4|CP029356.1_673144_674131_-	cd13558, PBP2_SsuA_like_2, Putative substrate binding domain of sulfonate binding protein, the type 2 periplasmic binding protein fold	NA|282aa|down_5|CP029356.1_674208_675054_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|271aa|down_6|CP029356.1_675060_675873_-	PRK11365, ssuC, aliphatic sulfonate ABC transporter permease SsuC	NA|304aa|down_7|CP029356.1_676000_676912_-	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|332aa|down_8|CP029356.1_676941_677937_-	cd13558, PBP2_SsuA_like_2, Putative substrate binding domain of sulfonate binding protein, the type 2 periplasmic binding protein fold	NA|535aa|down_9|CP029356.1_677948_679553_-	cd01533, 4RHOD_Repeat_2, Member of the Rhodanese Homology Domain superfamily, repeat 2
GCA_003130795.1_ASM313079v1	CP029358	Azospirillum thiophilum strain CFH 70021 plasmid unnamed3	1	328246-328650	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,WYL	Orphan	GCTTCAATGAGGCCTGGGCATTACTGCCCAG--------GAAGAC,GTCTTCCTGGGCAGTAATGCCCAGGCCTCATTGAAGCG,GTCTTCCTGGGCAGTAATGCCCAGGCCTCATTGAAGC	45,38,37	0	0	NA	NA	NA:NA:NA	5,5,5	5	Orphan	csb2gr5,cas7,cas8u1,cas3,RT,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas9,WYL	NA|145aa|up_9|CP029358.1_311454_311889_+,NA|179aa|down_2|CP029358.1_331865_332402_+	NA|145aa|up_9|CP029358.1_311454_311889_+	NA	NA|1138aa|up_8|CP029358.1_311994_315408_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|291aa|up_7|CP029358.1_315530_316403_+	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed	NA|797aa|up_6|CP029358.1_316962_319353_-	pfam16841, CBM60, Ca-dependent carbohydrate-binding module xylan-binding	NA|136aa|up_5|CP029358.1_319921_320329_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|562aa|up_4|CP029358.1_320455_322141_+	pfam00135, COesterase, Carboxylesterase family	NA|989aa|up_3|CP029358.1_322183_325150_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|160aa|up_2|CP029358.1_325514_325994_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|238aa|up_1|CP029358.1_326195_326909_-	pfam18089, DAPG_hydrolase, DAPG hydrolase PhiG domain	NA|223aa|up_0|CP029358.1_326960_327629_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|429aa|down_0|CP029358.1_329067_330354_+	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown]	NA|503aa|down_1|CP029358.1_330360_331869_+	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|179aa|down_2|CP029358.1_331865_332402_+	NA	NA|679aa|down_3|CP029358.1_332408_334445_-	PRK02628, nadE, NAD synthetase; Reviewed	NA|428aa|down_4|CP029358.1_334842_336126_-	cd05297, GH4_alpha_glucosidase_galactosidase, Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases	NA|445aa|down_5|CP029358.1_336315_337650_+	TIGR03356, BGL, beta-galactosidase	NA|596aa|down_6|CP029358.1_337741_339529_+	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|160aa|down_7|CP029358.1_339566_340046_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|202aa|down_8|CP029358.1_340115_340721_-	pfam04940, BLUF, Sensors of blue-light using FAD	NA|118aa|down_9|CP029358.1_340847_341201_-	pfam07369, DUF1488, Protein of unknown function (DUF1488)
GCA_003130795.1_ASM313079v1	CP029354	Azospirillum thiophilum strain CFH 70021 chromosome 3, complete sequence	2	604576-604646	1	CRISPRCasFinder	no			Orphan	CCTTCCAGCCGACCACCGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	csb2gr5,cas7,cas8u1,cas3,RT,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas9,WYL	NA,NA	NA|509aa|up_9|CP029354.1_590750_592277_-	PRK09419, PRK09419, multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase/5'-nucleotidase	NA|236aa|up_8|CP029354.1_592393_593101_-	PRK10101, csgB, curlin minor subunit CsgB; Provisional	NA|198aa|up_7|CP029354.1_593207_593801_-	PRK10101, csgB, curlin minor subunit CsgB; Provisional	NA|363aa|up_6|CP029354.1_593965_595054_-	pfam03783, CsgG, Curli production assembly/transport component CsgG	NA|144aa|up_5|CP029354.1_595168_595600_-	pfam10614, CsgF, Type VIII secretion system (T8SS), CsgF protein	NA|154aa|up_4|CP029354.1_596134_596596_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|178aa|up_3|CP029354.1_596683_597217_-	PRK07037, PRK07037, extracytoplasmic-function sigma-70 factor; Validated	NA|838aa|up_2|CP029354.1_597371_599885_+	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional	NA|337aa|up_1|CP029354.1_599918_600929_-	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|552aa|up_0|CP029354.1_601212_602868_+	TIGR01194, ATP-binding_protein_SyrD, cyclic peptide transporter	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
GCA_003130795.1_ASM313079v1	CP029355	Azospirillum thiophilum strain CFH 70021 chromosome 4, complete sequence	1	31546-31757	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no			Orphan	CCCTTCCCCGCAGGCGCGGGGGTGAACCG,CCCTTCCCCGCAGGCGCGGGGGTGAACC,CCCTTCCCCGCAGGCGCGGGGGTGAACCG	29,28,29	0	0	NA	NA	NA:NA:NA	3,3,3	3	Orphan	csb2gr5,cas7,cas8u1,cas3,RT,cas8e,cse2gr11,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas9,WYL	NA,NA|107aa|down_1|CP029355.1_32907_33228_+,NA|64aa|down_5|CP029355.1_37718_37910_-	NA|538aa|up_9|CP029355.1_20372_21986_-	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|285aa|up_8|CP029355.1_22153_23008_+	pfam00582, Usp, Universal stress protein family	NA|417aa|up_7|CP029355.1_23004_24255_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|163aa|up_6|CP029355.1_24309_24798_+	COG1762, PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism / Signal transduction mechanisms]	NA|985aa|up_5|CP029355.1_24847_27802_+	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|115aa|up_4|CP029355.1_27801_28146_+	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|542aa|up_3|CP029355.1_28142_29768_+	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|163aa|up_2|CP029355.1_29764_30253_+	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed	NA|93aa|up_1|CP029355.1_30252_30531_+	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|115aa|up_0|CP029355.1_30527_30872_+	PRK12671, PRK12671, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|227aa|down_0|CP029355.1_32230_32911_+	cd02042, ParAB_family, partition proteins ParAB family	NA|107aa|down_1|CP029355.1_32907_33228_+	NA	NA|143aa|down_2|CP029355.1_33462_33891_+	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|422aa|down_3|CP029355.1_33894_35160_+	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	NA|760aa|down_4|CP029355.1_35452_37732_-	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair]	NA|64aa|down_5|CP029355.1_37718_37910_-	NA	NA|207aa|down_6|CP029355.1_37932_38553_-	cd16892, LT_VirB1-like, VirB1-like subfamily	NA|185aa|down_7|CP029355.1_38549_39104_-	TIGR02771, Conjugal_transfer_protein_TraF, conjugative transfer signal peptidase TraF	NA|631aa|down_8|CP029355.1_39100_40993_-	PRK13880, PRK13880, conjugal transfer coupling protein TraG; Provisional	NA|594aa|down_9|CP029355.1_40989_42771_-	PRK13878, PRK13878, conjugal transfer relaxase TraI; Provisional
