assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003144075.1_ASM314407v1	CP029372	Listeria monocytogenes strain 2018TE5305-1-4 chromosome, complete genome	2	523753-524361	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DinG,cas3,WYL,DEDDh,csn2,cas2,cas1,cas9	Orphan	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	9,9,9	9	Orphan	csa3,DinG,cas3,WYL,DEDDh,csn2,cas2,cas1,cas9	NA|133aa|up_5|CP029372.1_518741_519140_+,NA|193aa|down_0|CP029372.1_524752_525331_+	NA|217aa|up_9|CP029372.1_514804_515455_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|CP029372.1_515563_517624_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|CP029372.1_517627_518230_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|CP029372.1_518257_518725_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|CP029372.1_518741_519140_+	NA	NA|217aa|up_4|CP029372.1_519150_519801_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|CP029372.1_519797_520844_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|CP029372.1_520859_521153_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|CP029372.1_521167_522439_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|CP029372.1_522578_523514_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|CP029372.1_524752_525331_+	NA	NA|227aa|down_1|CP029372.1_525438_526119_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|CP029372.1_526143_526503_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|CP029372.1_526509_526968_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|CP029372.1_527349_529185_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|CP029372.1_529285_529717_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|CP029372.1_529763_531194_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|CP029372.1_531314_532130_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|123aa|down_8|CP029372.1_532410_532779_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_9|CP029372.1_532925_534341_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCA_003144075.1_ASM314407v1	CP029372	Listeria monocytogenes strain 2018TE5305-1-4 chromosome, complete genome	3	2629654-2631671	3,2,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,cas3,WYL,DEDDh,csn2,cas2,cas1,cas9	Type II-A,Type II-C,Type II-B	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B:II-A,II-B	30,30,23,23	30	TypeII-A,TypeII-C,TypeII-B	csa3,DinG,cas3,WYL,DEDDh,csn2,cas2,cas1,cas9	NA|120aa|up_1|CP029372.1_2628746_2629106_-,NA|81aa|up_0|CP029372.1_2629233_2629476_-,NA|160aa|down_4|CP029372.1_2638170_2638650_-	NA|996aa|up_9|CP029372.1_2611827_2614815_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|281aa|up_8|CP029372.1_2615313_2616156_+	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|494aa|up_7|CP029372.1_2616203_2617685_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|296aa|up_6|CP029372.1_2617785_2618673_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|343aa|up_5|CP029372.1_2624464_2625493_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_4|CP029372.1_2625761_2627288_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_3|CP029372.1_2627329_2628181_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_2|CP029372.1_2628202_2628625_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|120aa|up_1|CP029372.1_2628746_2629106_-	NA	NA|81aa|up_0|CP029372.1_2629233_2629476_-	NA	csn2|221aa|down_0|CP029372.1_2631799_2632462_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|CP029372.1_2632451_2632793_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|CP029372.1_2632789_2633656_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|CP029372.1_2633656_2637661_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|160aa|down_4|CP029372.1_2638170_2638650_-	NA	NA|131aa|down_5|CP029372.1_2638874_2639267_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_6|CP029372.1_2639288_2639726_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_7|CP029372.1_2639920_2640667_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_8|CP029372.1_2640672_2641470_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_9|CP029372.1_2641472_2642339_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional
GCA_003144075.1_ASM314407v1	CP029372	Listeria monocytogenes strain 2018TE5305-1-4 chromosome, complete genome	4	2734319-2734429	4	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,DEDDh,csn2,cas2,cas1,cas9	Orphan	AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	34	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,DEDDh,csn2,cas2,cas1,cas9	NA,NA|74aa|down_2|CP029372.1_2735198_2735420_-,NA|52aa|down_4|CP029372.1_2737361_2737517_+,NA|214aa|down_5|CP029372.1_2737549_2738191_-	NA|330aa|up_9|CP029372.1_2726244_2727234_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|CP029372.1_2727255_2727852_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|CP029372.1_2727855_2728230_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|CP029372.1_2728335_2729187_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|CP029372.1_2729305_2730145_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|CP029372.1_2730265_2731108_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|CP029372.1_2731153_2731399_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|CP029372.1_2731413_2732010_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|CP029372.1_2732118_2732436_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|CP029372.1_2732465_2734205_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|CP029372.1_2734531_2734996_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|CP029372.1_2735013_2735196_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|CP029372.1_2735198_2735420_-	NA	NA|455aa|down_3|CP029372.1_2735554_2736919_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|CP029372.1_2737361_2737517_+	NA	NA|214aa|down_5|CP029372.1_2737549_2738191_-	NA	NA|505aa|down_6|CP029372.1_2738888_2740403_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_7|CP029372.1_2740517_2741456_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_8|CP029372.1_2741498_2742446_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|580aa|down_9|CP029372.1_2742586_2744326_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
