assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003150815.1_ASM315081v1	CP028704	Escherichia coli strain VH1 chromosome, complete genome	1	982356-982749	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	cas3,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA|47aa|up_1|CP028704.1_981065_981206_-,NA	NA|434aa|up_9|CP028704.1_971762_973064_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|CP028704.1_973111_975346_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|CP028704.1_975423_975672_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|CP028704.1_975671_976007_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|CP028704.1_976077_976869_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|CP028704.1_977096_978734_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|CP028704.1_978821_980120_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|CP028704.1_980179_981052_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|CP028704.1_981065_981206_-	NA	NA|224aa|up_0|CP028704.1_981344_982016_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|CP028704.1_983388_984867_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|CP028704.1_984893_986171_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|CP028704.1_986489_987275_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|CP028704.1_987344_988799_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|CP028704.1_988892_990230_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|CP028704.1_990207_990987_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|CP028704.1_990983_991844_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|CP028704.1_991991_992567_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|CP028704.1_992583_992844_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|CP028704.1_992834_994106_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCA_003150815.1_ASM315081v1	CP028704	Escherichia coli strain VH1 chromosome, complete genome	2	1008300-1009062	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,12,12	12	TypeI-E	cas3,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|571aa|up_9|CP028704.1_996663_998376_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|CP028704.1_998450_999185_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|CP028704.1_999543_1002210_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|CP028704.1_1002624_1004133_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|CP028704.1_1004125_1004608_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|CP028704.1_1004620_1005712_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|CP028704.1_1005714_1006389_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|CP028704.1_1006375_1006975_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|CP028704.1_1006990_1007908_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|CP028704.1_1007909_1008194_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP028704.1_1009144_1010182_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP028704.1_1010433_1011342_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP028704.1_1011343_1012771_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP028704.1_1012770_1013376_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP028704.1_1013425_1013749_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP028704.1_1013942_1014254_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP028704.1_1014272_1014983_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP028704.1_1014982_1015462_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP028704.1_1015458_1016508_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP028704.1_1016488_1017250_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_003150815.1_ASM315081v1	CP028704	Escherichia coli strain VH1 chromosome, complete genome	3	1535370-1535487	3	CRISPRCasFinder	no		cas3,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|300aa|up_9|CP028704.1_1524853_1525753_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|CP028704.1_1525945_1527136_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|CP028704.1_1527132_1528392_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_6|CP028704.1_1528381_1530010_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|CP028704.1_1530282_1531641_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|CP028704.1_1531645_1532722_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|69aa|up_3|CP028704.1_1532763_1532970_-	PRK09729, PRK09729, hypothetical protein; Provisional	NA|217aa|up_2|CP028704.1_1533184_1533835_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|CP028704.1_1533888_1534143_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|CP028704.1_1534142_1535273_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|CP028704.1_1535506_1537792_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|CP028704.1_1538487_1542240_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|CP028704.1_1542367_1543090_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|CP028704.1_1543236_1545864_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|CP028704.1_1546012_1547701_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|CP028704.1_1547697_1548321_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1338aa|down_6|CP028704.1_1548344_1552358_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|162aa|down_7|CP028704.1_1552373_1552859_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_8|CP028704.1_1552859_1554509_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_9|CP028704.1_1554513_1555290_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_003150815.1_ASM315081v1	CP028704	Escherichia coli strain VH1 chromosome, complete genome	4	2137708-2137831	4	CRISPRCasFinder	no	DEDDh	cas3,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA|75aa|down_7|CP028704.1_2146416_2146641_-,NA|30aa|down_8|CP028704.1_2146727_2146817_+	NA|471aa|up_9|CP028704.1_2127162_2128575_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|CP028704.1_2129131_2129341_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|CP028704.1_2129795_2130422_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|CP028704.1_2130442_2132545_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|CP028704.1_2132548_2133196_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|CP028704.1_2133259_2133928_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|CP028704.1_2133924_2134710_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|CP028704.1_2134713_2135526_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|CP028704.1_2135537_2137142_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|CP028704.1_2137267_2137573_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|CP028704.1_2138145_2139402_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|CP028704.1_2139442_2140816_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|CP028704.1_2141030_2141672_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|CP028704.1_2141711_2142860_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|CP028704.1_2143150_2144362_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|CP028704.1_2144474_2145407_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|CP028704.1_2145403_2146429_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|CP028704.1_2146416_2146641_-	NA	NA|30aa|down_8|CP028704.1_2146727_2146817_+	NA	NA|390aa|down_9|CP028704.1_2146982_2148152_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCA_003150815.1_ASM315081v1	CP028704	Escherichia coli strain VH1 chromosome, complete genome	6	3047295-3047439	6	CRISPRCasFinder	no		cas3,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA|60aa|up_1|CP028704.1_3045708_3045888_+,NA|70aa|down_9|CP028704.1_3058159_3058369_-	NA|303aa|up_9|CP028704.1_3036579_3037488_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_8|CP028704.1_3037679_3039701_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_7|CP028704.1_3040279_3040957_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_6|CP028704.1_3040949_3041705_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_5|CP028704.1_3041691_3042846_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_4|CP028704.1_3042842_3043883_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_3|CP028704.1_3043969_3045259_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_2|CP028704.1_3045317_3045794_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|60aa|up_1|CP028704.1_3045708_3045888_+	NA	NA|428aa|up_0|CP028704.1_3045945_3047229_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|CP028704.1_3047462_3049724_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|CP028704.1_3049906_3051340_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|CP028704.1_3051415_3052468_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|CP028704.1_3052651_3053605_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|CP028704.1_3053645_3054641_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|CP028704.1_3054795_3055614_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|CP028704.1_3055614_3056673_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|CP028704.1_3056675_3057365_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|CP028704.1_3057364_3058138_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|70aa|down_9|CP028704.1_3058159_3058369_-	NA
GCA_003150815.1_ASM315081v1	CP028704	Escherichia coli strain VH1 chromosome, complete genome	7	3301763-3301859	7	CRISPRCasFinder	no		cas3,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|231aa|up_9|CP028704.1_3293558_3294251_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|CP028704.1_3294470_3295013_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|CP028704.1_3295483_3296350_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|CP028704.1_3296351_3296564_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|CP028704.1_3296671_3297193_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|CP028704.1_3297228_3298614_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|CP028704.1_3298787_3299282_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|CP028704.1_3299284_3300007_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|CP028704.1_3300124_3300634_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|CP028704.1_3300630_3301698_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|CP028704.1_3301892_3302786_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|CP028704.1_3302782_3303598_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|CP028704.1_3303608_3304868_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|CP028704.1_3304877_3306545_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|CP028704.1_3306861_3307911_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|CP028704.1_3307932_3309168_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|CP028704.1_3309178_3309964_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|CP028704.1_3310191_3311337_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|CP028704.1_3311358_3312660_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|CP028704.1_3312716_3314078_-	PRK08044, PRK08044, allantoinase AllB
GCA_003150815.1_ASM315081v1	CP028704	Escherichia coli strain VH1 chromosome, complete genome	8	3442004-3442148	8	CRISPRCasFinder	no		cas3,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA|66aa|down_5|CP028704.1_3445825_3446023_-	NA|357aa|up_9|CP028704.1_3427142_3428213_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|CP028704.1_3428305_3428887_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|605aa|up_7|CP028704.1_3428891_3430706_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|CP028704.1_3430864_3432238_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|CP028704.1_3432313_3433633_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|CP028704.1_3434039_3435335_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|CP028704.1_3435392_3436082_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|CP028704.1_3436271_3437474_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|CP028704.1_3437470_3440617_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|CP028704.1_3440742_3441927_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|CP028704.1_3442171_3443080_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|CP028704.1_3443204_3444116_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|94aa|down_2|CP028704.1_3444273_3444555_-	pfam10971, DUF2773, Protein of unknown function (DUF2773)	NA|95aa|down_3|CP028704.1_3444762_3445047_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|CP028704.1_3445118_3445796_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|66aa|down_5|CP028704.1_3445825_3446023_-	NA	NA|64aa|down_6|CP028704.1_3446053_3446245_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_7|CP028704.1_3446294_3446819_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_8|CP028704.1_3447001_3447460_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|377aa|down_9|CP028704.1_3447842_3448973_-	pfam01609, DDE_Tnp_1, Transposase DDE domain
GCA_003150815.1_ASM315081v1	CP028704	Escherichia coli strain VH1 chromosome, complete genome	9	3715495-3715629	9	CRISPRCasFinder	no		cas3,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	GGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCA	50	1	2	3715545-3715579|3715545-3715579	CP028704.1_3776633-3776599|CP028704.1_844339-844305	NA	1	1	Orphan	cas3,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA|217aa|down_4|CP028704.1_3723068_3723719_-	NA|393aa|up_9|CP028704.1_3703478_3704657_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|CP028704.1_3704758_3704890_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|CP028704.1_3704978_3706634_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|CP028704.1_3706797_3707781_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|CP028704.1_3707756_3709367_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|CP028704.1_3709350_3710049_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|CP028704.1_3710162_3710927_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|CP028704.1_3711012_3711891_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|CP028704.1_3712229_3713930_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|CP028704.1_3713940_3715443_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|CP028704.1_3715642_3716338_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|CP028704.1_3716412_3718764_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|CP028704.1_3718928_3721835_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|CP028704.1_3721846_3722506_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|217aa|down_4|CP028704.1_3723068_3723719_-	NA	NA|272aa|down_5|CP028704.1_3724013_3724829_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_6|CP028704.1_3725083_3727438_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_7|CP028704.1_3727490_3728777_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_8|CP028704.1_3728776_3729766_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_9|CP028704.1_3729762_3730584_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
GCA_003150815.1_ASM315081v1	CP028704	Escherichia coli strain VH1 chromosome, complete genome	10	4329003-4329135	10	CRISPRCasFinder	no		cas3,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	TGCCGGATGCGGCACAAGTGCCTTATCCGGCCTACAGGTCG	41	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA|36aa|up_6|CP028704.1_4322008_4322116_-,NA|85aa|down_8|CP028704.1_4337364_4337619_-	NA|458aa|up_9|CP028704.1_4318744_4320118_+	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA	NA|225aa|up_8|CP028704.1_4320223_4320898_-	PRK11536, PRK11536, 6-N-hydroxylaminopurine resistance protein; Provisional	NA|322aa|up_7|CP028704.1_4321046_4322012_-	TIGR00793, 2-keto-3-deoxygluconate_permease, 2-keto-3-deoxygluconate transporter	NA|36aa|up_6|CP028704.1_4322008_4322116_-	NA	NA|207aa|up_5|CP028704.1_4322290_4322911_-	PRK10925, PRK10925, superoxide dismutase [Mn]	NA|345aa|up_4|CP028704.1_4323195_4324230_+	pfam06379, RhaT, L-rhamnose-proton symport protein (RhaT)	NA|313aa|up_3|CP028704.1_4324226_4325165_-	PRK13500, PRK13500, HTH-type transcriptional activator RhaR	NA|279aa|up_2|CP028704.1_4325148_4325985_-	PRK13503, PRK13503, HTH-type transcriptional activator RhaS	NA|490aa|up_1|CP028704.1_4326272_4327742_+	PRK10640, rhaB, rhamnulokinase; Provisional	NA|420aa|up_0|CP028704.1_4327738_4328998_+	PRK01076, PRK01076, L-rhamnose isomerase; Provisional	NA|275aa|down_0|CP028704.1_4329172_4329997_+	PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional	NA|105aa|down_1|CP028704.1_4330006_4330321_+	TIGR02625, L-rhamnose_mutarotase, L-rhamnose mutarotase	NA|149aa|down_2|CP028704.1_4330621_4331068_+	PRK09913, PRK09913, PTS fructose transporter subunit IIA	NA|484aa|down_3|CP028704.1_4331078_4332530_+	PRK11404, PRK11404, PTS fructose-like transporter subunit IIBC	NA|357aa|down_4|CP028704.1_4332519_4333590_+	PRK09864, PRK09864, aminopeptidase	NA|583aa|down_5|CP028704.1_4333589_4335338_+	PRK09863, PRK09863, putative frv operon regulatory protein; Provisional	NA|352aa|down_6|CP028704.1_4335387_4336443_-	pfam12889, DUF3829, Protein of unknown function (DUF3829)	NA|278aa|down_7|CP028704.1_4336595_4337429_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|85aa|down_8|CP028704.1_4337364_4337619_-	NA	NA|196aa|down_9|CP028704.1_4337622_4338210_+	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit
