assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003150935.1_ASM315093v1	CP029476	Lactobacillus apis strain ESL0185 chromosome, complete genome	1	229913-230345	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,DEDDh	cas9,cas1,cas2,DEDDh,cas3,DinG	Type II-A,,Type II-C,Type II-B	GTTTTAGCTGGTTGTTAAATCAATGATGATTAGAAC,GTTTTAGCTGGTTGTTAAATCAATGATGATTAGAACA,GTTTTAGNTGGTTGTTAAATCAATGATGATTAGAAC	36,37,36	0	0	NA	NA	NA:NA:NA	5,6,6	6	TypeII-A,,TypeII-C,TypeII-B	cas9,cas1,cas2,DEDDh,cas3,DinG	NA|718aa|up_8|CP029476.1_216433_218587_+,NA|79aa|up_5|CP029476.1_221089_221326_+,NA|275aa|down_5|CP029476.1_234591_235416_+	NA|276aa|up_9|CP029476.1_215604_216432_+	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component	NA|718aa|up_8|CP029476.1_216433_218587_+	NA	NA|372aa|up_7|CP029476.1_218589_219705_+	pfam11175, DUF2961, Protein of unknown function (DUF2961)	NA|421aa|up_6|CP029476.1_219765_221028_+	TIGR02395, RNA_polymerase_sigma-54_factor, RNA polymerase sigma-54 factor	NA|79aa|up_5|CP029476.1_221089_221326_+	NA	NA|314aa|up_4|CP029476.1_221435_222377_-	cd19092, AKR_BsYcsN_EcYdhF-like, Bacillus subtilis YcsN, Escherichia coli YdhF and similar proteins	NA|302aa|up_3|CP029476.1_222573_223479_+	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases	cas9|1398aa|up_2|CP029476.1_223598_227792_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|305aa|up_1|CP029476.1_228018_228933_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_0|CP029476.1_228910_229216_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|42aa|down_0|CP029476.1_230348_230474_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|418aa|down_1|CP029476.1_230816_232070_-	cd06436, GlcNAc-1-P_transferase, N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine	NA|305aa|down_2|CP029476.1_232288_233203_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|150aa|down_3|CP029476.1_233480_233930_+	pfam11694, DUF3290, Protein of unknown function (DUF3290)	NA|212aa|down_4|CP029476.1_233942_234578_+	COG2323, COG2323, Predicted membrane protein [Function unknown]	NA|275aa|down_5|CP029476.1_234591_235416_+	NA	DEDDh|318aa|down_6|CP029476.1_235425_236379_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|296aa|down_7|CP029476.1_236478_237366_+	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease	NA|275aa|down_8|CP029476.1_237605_238430_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|362aa|down_9|CP029476.1_239269_240355_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
GCA_003150935.1_ASM315093v1	CP029476	Lactobacillus apis strain ESL0185 chromosome, complete genome	2	479209-479971	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas9,cas1,cas2,DEDDh,cas3,DinG	Orphan	GTTTTAGATGGTTGTTAAATCAATGATGGTTAGAAC,GTTTTAGATGGTTGTTAAATCAATGATGGTTAGAACT,GTTTTAGATGGTTGTTAAATCAATGATGGTTAGAAC	36,37,36	0	0	NA	NA	NA:NA:NA	10,11,11	11	Orphan	cas9,cas1,cas2,DEDDh,cas3,DinG	NA,NA|114aa|down_0|CP029476.1_480010_480352_+,NA|95aa|down_1|CP029476.1_480663_480948_-,NA|160aa|down_5|CP029476.1_484582_485062_+,NA|154aa|down_6|CP029476.1_485067_485529_-	NA|79aa|up_9|CP029476.1_469623_469860_-	pfam09954, DUF2188, Uncharacterized protein conserved in bacteria (DUF2188)	NA|381aa|up_8|CP029476.1_470274_471417_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|178aa|up_7|CP029476.1_471457_471991_-	pfam04138, GtrA, GtrA-like protein	NA|149aa|up_6|CP029476.1_471983_472430_-	PRK07308, PRK07308, flavodoxin; Validated	NA|276aa|up_5|CP029476.1_472569_473397_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|308aa|up_4|CP029476.1_473402_474326_+	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|300aa|up_3|CP029476.1_474385_475285_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|384aa|up_2|CP029476.1_475417_476569_+	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|404aa|up_1|CP029476.1_476572_477784_+	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	NA|388aa|up_0|CP029476.1_477783_478947_+	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	NA|114aa|down_0|CP029476.1_480010_480352_+	NA	NA|95aa|down_1|CP029476.1_480663_480948_-	NA	NA|319aa|down_2|CP029476.1_481017_481974_+	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|459aa|down_3|CP029476.1_482255_483632_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|272aa|down_4|CP029476.1_483757_484573_+	PRK14135, recX, recombination regulator RecX; Provisional	NA|160aa|down_5|CP029476.1_484582_485062_+	NA	NA|154aa|down_6|CP029476.1_485067_485529_-	NA	NA|290aa|down_7|CP029476.1_485629_486499_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|524aa|down_8|CP029476.1_486498_488070_+	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|94aa|down_9|CP029476.1_488109_488391_-	pfam08860, DUF1827, Domain of unknown function (DUF1827)
GCA_003150935.1_ASM315093v1	CP029476	Lactobacillus apis strain ESL0185 chromosome, complete genome	3	1552072-1563799	3	CRT	no		cas9,cas1,cas2,DEDDh,cas3,DinG	Orphan	CCNTCNGANCCNTCNGANC	19	1	1	1557896-1557921	CP029476.1_1552064-1552089	NA	192	192	Orphan	cas9,cas1,cas2,DEDDh,cas3,DinG	NA,NA|74aa|down_0|CP029476.1_1565706_1565928_+	NA|297aa|up_9|CP029476.1_1531689_1532580_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|318aa|up_8|CP029476.1_1532841_1533795_+	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|498aa|up_7|CP029476.1_1534097_1535591_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|710aa|up_6|CP029476.1_1535754_1537884_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|1883aa|up_5|CP029476.1_1538306_1543955_-	NF033187, internalin_J, class 1 internalin InlJ	NA|130aa|up_4|CP029476.1_1544989_1545379_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|255aa|up_3|CP029476.1_1545975_1546740_-	pfam06458, MucBP, MucBP domain	NA|814aa|up_2|CP029476.1_1547289_1549731_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|358aa|up_1|CP029476.1_1550286_1551360_-	cd02253, DmpA, L-Aminopeptidase D-amidase/D-esterase (DmpA) family; DmpA catalyzes the release of N-terminal D and L amino acids from peptide susbtrates	NA|167aa|up_0|CP029476.1_1551488_1551989_-	pfam06458, MucBP, MucBP domain	NA|74aa|down_0|CP029476.1_1565706_1565928_+	NA	NA|737aa|down_1|CP029476.1_1567037_1569248_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|766aa|down_2|CP029476.1_1569622_1571920_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|169aa|down_3|CP029476.1_1572227_1572734_-	cd02908, Macro_OAADPr_deacetylase, macrodomain, O-acetyl-ADP-ribose (OAADPr) family	NA|258aa|down_4|CP029476.1_1572825_1573599_-	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|501aa|down_5|CP029476.1_1573632_1575135_-	PRK00047, glpK, glycerol kinase GlpK	NA|272aa|down_6|CP029476.1_1575274_1576090_+	pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase	NA|223aa|down_7|CP029476.1_1576158_1576827_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|340aa|down_8|CP029476.1_1576961_1577981_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|249aa|down_9|CP029476.1_1578069_1578816_+	COG0583, LysR, Transcriptional regulator [Transcription]
