assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003193705.1_ASM319370v1	CP029675	Staphylococcus aureus strain AR_0219 chromosome, complete genome	1	187870-187954	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	4	187896-187928|187896-187928|187896-187928|187896-187928	CP029675.1_1424572-1424604|CP029675.1_847367-847335|CP029675.1_847426-847394|CP029675.1_1512952-1512920	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|402aa|up_9|CP029675.1_177016_178222_+,NA|68aa|down_0|CP029675.1_188015_188219_-	NA|402aa|up_9|CP029675.1_177016_178222_+	NA	NA|270aa|up_8|CP029675.1_178618_179428_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|CP029675.1_179438_179996_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|CP029675.1_179995_180883_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|CP029675.1_180936_182199_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|CP029675.1_182275_183421_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|CP029675.1_183485_183812_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|CP029675.1_183818_184202_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|CP029675.1_184627_186115_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|CP029675.1_186761_187721_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|CP029675.1_188015_188219_-	NA	NA|171aa|down_1|CP029675.1_188397_188910_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|CP029675.1_189251_189992_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|CP029675.1_190005_190977_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|CP029675.1_190973_191735_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|345aa|down_5|CP029675.1_191744_192779_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|44aa|down_6|CP029675.1_193223_193355_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|CP029675.1_193528_194554_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|406aa|down_8|CP029675.1_194972_196190_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2398aa|down_9|CP029675.1_196618_203812_+	PRK12467, PRK12467, peptide synthase; Provisional
GCA_003193705.1_ASM319370v1	CP029675	Staphylococcus aureus strain AR_0219 chromosome, complete genome	2	427653-427754	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|128aa|up_9|CP029675.1_418728_419112_-,NA|64aa|up_7|CP029675.1_420080_420272_-,NA|221aa|down_1|CP029675.1_428844_429507_-	NA|128aa|up_9|CP029675.1_418728_419112_-	NA	NA|209aa|up_8|CP029675.1_419381_420008_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|64aa|up_7|CP029675.1_420080_420272_-	NA	NA|508aa|up_6|CP029675.1_420451_421975_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_5|CP029675.1_421990_422560_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_4|CP029675.1_423051_423807_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_3|CP029675.1_423886_425275_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|286aa|up_2|CP029675.1_426121_426979_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|51aa|up_1|CP029675.1_426978_427131_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|84aa|up_0|CP029675.1_427187_427439_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|319aa|down_0|CP029675.1_427770_428727_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|CP029675.1_428844_429507_-	NA	NA|136aa|down_2|CP029675.1_429649_430057_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|CP029675.1_430569_431148_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|CP029675.1_431147_432416_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|CP029675.1_432453_433920_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|CP029675.1_433944_435486_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|CP029675.1_435553_436747_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|CP029675.1_436773_436974_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|CP029675.1_437471_437702_-	pfam12645, HTH_16, Helix-turn-helix domain
GCA_003193705.1_ASM319370v1	CP029675	Staphylococcus aureus strain AR_0219 chromosome, complete genome	3	841777-841855	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	841801-841831|841801-841831|841801-841831	CP029675.1_311096-311066|CP029675.1_311041-311011|CP029675.1_1728895-1728925	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	cas3|318aa|up_9|CP029675.1_827413_828367_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_8|CP029675.1_828359_829034_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_7|CP029675.1_829094_829667_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_6|CP029675.1_830080_832612_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|331aa|up_5|CP029675.1_833044_834037_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|269aa|up_4|CP029675.1_834478_835285_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|CP029675.1_835458_836109_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|CP029675.1_836105_836342_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|CP029675.1_836610_838596_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|CP029675.1_838603_841450_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|CP029675.1_842113_843046_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|CP029675.1_843051_843891_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|CP029675.1_843898_844384_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|CP029675.1_844391_845831_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|CP029675.1_845897_846833_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|CP029675.1_847777_848689_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|CP029675.1_848685_849681_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|CP029675.1_849791_850736_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|CP029675.1_851299_851887_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|CP029675.1_852129_853032_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCA_003193705.1_ASM319370v1	CP029675	Staphylococcus aureus strain AR_0219 chromosome, complete genome	4	905255-905336	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	905279-905312	CP029675.1_1424604-1424571	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|38aa|up_1|CP029675.1_904157_904271_+,NA	NA|206aa|up_9|CP029675.1_899011_899629_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|CP029675.1_899783_900278_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|CP029675.1_900676_901099_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|CP029675.1_901246_901963_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|CP029675.1_902045_902585_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|CP029675.1_902735_903056_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|CP029675.1_903199_903556_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|CP029675.1_903713_904094_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|CP029675.1_904157_904271_+	NA	NA|293aa|up_0|CP029675.1_904272_905151_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|CP029675.1_905947_906334_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|CP029675.1_906326_906623_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|CP029675.1_906872_907898_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|218aa|down_3|CP029675.1_907932_908586_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|CP029675.1_908603_909425_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|CP029675.1_909778_909973_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|CP029675.1_910206_911058_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|CP029675.1_911385_912147_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|CP029675.1_912244_913552_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|CP029675.1_913666_914908_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCA_003193705.1_ASM319370v1	CP029675	Staphylococcus aureus strain AR_0219 chromosome, complete genome	5	1694413-1694497	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	3	1694439-1694471|1694439-1694471|1694439-1694471	CP029675.1_847335-847367|CP029675.1_847394-847426|CP029675.1_1424604-1424572	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|224aa|up_9|CP029675.1_1683623_1684295_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|CP029675.1_1684550_1684727_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|CP029675.1_1685019_1686366_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|CP029675.1_1686372_1687125_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|CP029675.1_1687126_1688065_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|CP029675.1_1688068_1689208_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|CP029675.1_1689343_1691176_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|CP029675.1_1691244_1691871_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|CP029675.1_1691902_1692880_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|322aa|up_0|CP029675.1_1692979_1693945_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|CP029675.1_1694669_1696493_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|CP029675.1_1696838_1697090_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|CP029675.1_1697134_1698109_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|CP029675.1_1698165_1700367_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|CP029675.1_1700371_1700833_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|226aa|down_5|CP029675.1_1700924_1701602_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|CP029675.1_1701650_1702367_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|CP029675.1_1702369_1702723_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|CP029675.1_1702723_1703308_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|CP029675.1_1703297_1703867_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCA_003193705.1_ASM319370v1	CP029675	Staphylococcus aureus strain AR_0219 chromosome, complete genome	6	2130454-2130535	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	5	2130478-2130511|2130478-2130511|2130478-2130511|2130478-2130511|2130478-2130511	CP029675.1_841776-841809|CP029675.1_1212869-1212836|CP029675.1_1822683-1822650|CP029675.1_1428945-1428978|CP029675.1_2837211-2837244	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|61aa|up_6|CP029675.1_2123676_2123859_+,NA|44aa|down_4|CP029675.1_2136341_2136473_-,NA|114aa|down_7|CP029675.1_2138342_2138684_-	NA|81aa|up_9|CP029675.1_2121640_2121883_-	pfam05339, DUF739, Protein of unknown function (DUF739)	NA|239aa|up_8|CP029675.1_2122046_2122763_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|286aa|up_7|CP029675.1_2122774_2123632_+	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|61aa|up_6|CP029675.1_2123676_2123859_+	NA	NA|155aa|up_5|CP029675.1_2123958_2124423_+	PRK08119, PRK08119, flagellar motor switch protein; Validated	NA|346aa|up_4|CP029675.1_2124481_2125519_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|275aa|up_3|CP029675.1_2125575_2126400_+	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|339aa|up_2|CP029675.1_2126637_2127654_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|CP029675.1_2127675_2128731_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|401aa|up_0|CP029675.1_2129166_2130369_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|CP029675.1_2130676_2131984_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|241aa|down_1|CP029675.1_2133000_2133723_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|267aa|down_2|CP029675.1_2133891_2134692_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|187aa|down_3|CP029675.1_2135478_2136039_+	cd15783, SA1633_like, Uncharacterized protein family conserved in Staphylococci	NA|44aa|down_4|CP029675.1_2136341_2136473_-	NA	NA|235aa|down_5|CP029675.1_2136917_2137622_+	PRK13038, PRK13038, superantigen-like protein; Reviewed	NA|190aa|down_6|CP029675.1_2137776_2138346_-	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|114aa|down_7|CP029675.1_2138342_2138684_-	NA	NA|176aa|down_8|CP029675.1_2138686_2139214_-	COG5577, COG5577, Spore coat protein [Cell envelope biogenesis, outer membrane]	NA|73aa|down_9|CP029675.1_2139264_2139483_-	pfam16722, SAPIS-gp6, Pathogenicity island protein gp6 in Staphylococcus
GCA_003193705.1_ASM319370v1	CP029675	Staphylococcus aureus strain AR_0219 chromosome, complete genome	7	2146097-2146185	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|75aa|up_9|CP029675.1_2140089_2140314_-,NA|127aa|up_7|CP029675.1_2141517_2141898_-,NA|70aa|up_3|CP029675.1_2145193_2145403_-,NA|49aa|up_2|CP029675.1_2145395_2145542_-,NA	NA|75aa|up_9|CP029675.1_2140089_2140314_-	NA	NA|214aa|up_8|CP029675.1_2140879_2141521_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_7|CP029675.1_2141517_2141898_-	NA	NA|570aa|up_6|CP029675.1_2142207_2143917_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|up_5|CP029675.1_2143930_2144800_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|109aa|up_4|CP029675.1_2144864_2145191_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|70aa|up_3|CP029675.1_2145193_2145403_-	NA	NA|49aa|up_2|CP029675.1_2145395_2145542_-	NA	NA|106aa|up_1|CP029675.1_2145538_2145856_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|CP029675.1_2145860_2146079_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|CP029675.1_2146251_2146926_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|CP029675.1_2146939_2148112_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|CP029675.1_2148180_2149797_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|CP029675.1_2149872_2150157_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|CP029675.1_2150331_2151075_+	pfam02517, Abi, CAAX protease self-immunity	NA|416aa|down_5|CP029675.1_2151099_2152347_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_6|CP029675.1_2152543_2153170_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|CP029675.1_2153530_2154316_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|CP029675.1_2154915_2155050_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|206aa|down_9|CP029675.1_2155231_2155849_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
GCA_003193705.1_ASM319370v1	CP029675	Staphylococcus aureus strain AR_0219 chromosome, complete genome	8	2275251-2275331	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|CP029675.1_2270125_2270356_-,NA|364aa|up_0|CP029675.1_2274142_2275234_+,NA|53aa|down_1|CP029675.1_2276450_2276609_+	NA|237aa|up_9|CP029675.1_2265736_2266447_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP029675.1_2266567_2267011_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP029675.1_2267210_2267624_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP029675.1_2268080_2269454_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP029675.1_2270125_2270356_-	NA	NA|313aa|up_4|CP029675.1_2270386_2271325_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP029675.1_2271760_2272426_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP029675.1_2272577_2272898_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|CP029675.1_2272899_2273877_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP029675.1_2274142_2275234_+	NA	NA|57aa|down_0|CP029675.1_2276287_2276458_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|down_1|CP029675.1_2276450_2276609_+	NA	NA|286aa|down_2|CP029675.1_2277266_2278124_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|CP029675.1_2278191_2278974_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|CP029675.1_2279205_2281011_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|CP029675.1_2281691_2283230_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|CP029675.1_2283264_2285397_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|CP029675.1_2285408_2285843_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|CP029675.1_2285842_2286949_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|CP029675.1_2287267_2294713_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCA_003193705.1_ASM319370v1	CP029675	Staphylococcus aureus strain AR_0219 chromosome, complete genome	10	2395329-2395409	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	17	2395354-2395384|2395354-2395384|2395354-2395384|2395354-2395384|2395354-2395384|2395354-2395384|2395354-2395384|2395354-2395384|2395354-2395384|2395354-2395384|2395354-2395384|2395354-2395384|2395354-2395384|2395354-2395384|2395354-2395384|2395354-2395384|2395354-2395384	CP029675.1_854579-854609|CP029675.1_854635-854665|CP029675.1_854691-854721|CP029675.1_854747-854777|CP029675.1_89385-89415|CP029675.1_387428-387398|CP029675.1_675507-675477|CP029675.1_854803-854833|CP029675.1_905591-905621|CP029675.1_1115845-1115875|CP029675.1_1218462-1218432|CP029675.1_1424560-1424530|CP029675.1_1512964-1512994|CP029675.1_1709107-1709077|CP029675.1_2027945-2027975|CP029675.1_2384553-2384583|CP029675.1_2561580-2561610	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|44aa|up_9|CP029675.1_2384283_2384415_-,NA|55aa|up_7|CP029675.1_2385862_2386027_+,NA|106aa|up_6|CP029675.1_2386271_2386589_+,NA	NA|44aa|up_9|CP029675.1_2384283_2384415_-	NA	NA|303aa|up_8|CP029675.1_2384821_2385730_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_7|CP029675.1_2385862_2386027_+	NA	NA|106aa|up_6|CP029675.1_2386271_2386589_+	NA	NA|1056aa|up_5|CP029675.1_2386772_2389940_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_4|CP029675.1_2390056_2391322_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|255aa|up_3|CP029675.1_2391953_2392718_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_2|CP029675.1_2392879_2393320_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|374aa|up_1|CP029675.1_2393402_2394524_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_0|CP029675.1_2394625_2394976_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|341aa|down_0|CP029675.1_2395552_2396575_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|CP029675.1_2396594_2397194_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|CP029675.1_2397200_2397434_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|CP029675.1_2397439_2397886_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|CP029675.1_2397899_2398385_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|CP029675.1_2398381_2399641_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|CP029675.1_2399703_2400198_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|CP029675.1_2400199_2400706_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|CP029675.1_2400736_2401741_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|CP029675.1_2401910_2402516_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
