The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	554862	613101	2880689	head,portal,capsid,holin,terminase,integrase,protease,tail	Staphylococcus_phage(97.1%)	76	568729:568746	593660:593677
AWQ75124.1|554862_555606_-|protease	CAAX protease self-immunity family protein	protease	NA	NA	NA	NA
AWQ74810.1|555780_556065_+	10 kDa chaperonin	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
AWQ74505.1|556140_557757_+	chaperonin GroL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
AWQ74091.1|558667_559258_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
AWQ75521.1|559611_559953_+	putative membrane protein	NA	NA	NA	NA	NA
AWQ74954.1|560117_560561_+	acetyltransferase family protein	NA	NA	NA	NA	NA
AWQ74710.1|561413_562721_-	ktr system potassium uptake protein B	NA	NA	NA	NA	NA
AWQ75274.1|562881_563793_+	periplasmic binding family protein	NA	NA	NA	NA	NA
AWQ74403.1|563854_564700_+	leucine carboxyl methyltransferase family protein	NA	NA	NA	NA	NA
AWQ73619.1|565071_566295_-	putative succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AWQ73478.1|566729_567785_+	hypothetical protein	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
AWQ75277.1|567806_568823_+	hypothetical protein	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
568729:568746	attL	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
AWQ73730.1|569060_569885_-	sphingomyelin phosphodiesterase	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	6.8e-162
AWQ74564.1|569941_570979_-|integrase	integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
AWQ75895.1|571169_571883_-	pemK-like family protein	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
AWQ74829.1|571960_572143_-	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
AWQ75758.1|572346_572688_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
AWQ74106.1|572693_573626_-	exonuclease family protein	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
AWQ74536.1|573641_574355_-	helix-turn-helix family protein	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
AWQ73506.1|574487_574751_+	helix-turn-helix family protein	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
AWQ75090.1|574970_575300_-	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
AWQ75849.1|575350_576103_+	phage antirepressor KilAC domain protein	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
AWQ73991.1|576118_576295_+	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
AWQ75819.1|576291_576510_-	putative phiSLT ORF78-like protein	NA	A0A0H3U2T9	Staphylococcus_phage	98.6	7.0e-34
AWQ74687.1|576580_576901_+	hypothetical protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
AWQ75603.1|577153_577414_+	hypothetical protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
AWQ73775.1|577453_577714_+	hypothetical protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
AWQ73516.1|577994_579938_+	AAA domain protein	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
AWQ75510.1|579939_580860_+	recombinase, phage RecT family protein	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
AWQ74599.1|581072_581558_+	beta-lactamase superfamily domain protein	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.2e-87
AWQ75390.1|581558_582029_+	single-stranded DNA-binding family protein	NA	A0A0H3U4B5	Staphylococcus_phage	100.0	4.4e-81
AWQ73758.1|582058_582952_+	dnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
AWQ74019.1|582958_583177_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
AWQ73960.1|583185_583590_+	endodeoxyribonuclease RusA family protein	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
AWQ75358.1|583602_583971_+	PVL ORF-50-like family protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
AWQ75221.1|584052_584217_+	phage family protein	NA	A0A0H3U4B0	Staphylococcus_phage	98.1	1.7e-24
AWQ74191.1|584231_584597_+	acetyltransferase family protein	NA	A0A0H3U4X7	Staphylococcus_phage	96.4	1.1e-52
AWQ75967.1|584589_584826_+	hypothetical protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
AWQ74589.1|584815_585058_+	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
AWQ74005.1|585050_585584_+	dUTP diphosphatase family protein	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
AWQ75992.1|585620_585866_+	putative membrane protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
AWQ75755.1|585862_586069_+	hypothetical protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
AWQ74506.1|586065_586452_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
AWQ74254.1|586448_586598_+	transcriptional activator RinB family protein	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AWQ74273.1|586597_586798_+	hypothetical protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
AWQ73998.1|586825_587242_+	phage transcriptional regulator, RinA family protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
AWQ73665.1|587473_587773_+	HNH endonuclease family protein	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
AWQ74249.1|587902_588247_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
AWQ75719.1|588243_589905_+	phage Terminase family protein	NA	A0A2I6PDJ8	Staphylococcus_phage	99.8	0.0e+00
AWQ75228.1|589920_591108_+|portal	phage portal protein, HK97 family	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
AWQ74592.1|591091_591829_+|protease	clp protease family protein	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
AWQ74609.1|591852_592998_+|capsid	phage major capsid protein, HK97 family	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
AWQ75456.1|593017_593302_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
AWQ75069.1|593291_593576_+|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
AWQ75645.1|593559_593922_+|head,tail	phage head-tail joining family protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
593660:593677	attR	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
AWQ74706.1|593918_594323_+	hypothetical protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
AWQ74176.1|594727_595372_+|tail	phage major tail, phi13 family protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
AWQ74913.1|595497_595638_+	bacterial Ig-like domain family protein	NA	A0A2I6PDK6	Staphylococcus_phage	97.8	7.2e-16
AWQ75325.1|595687_596038_+	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
AWQ75814.1|596088_596226_+	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
AWQ75187.1|596282_600812_+|tail	phage tail tape measure protein, TP901 family, core region	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
AWQ75420.1|600808_602293_+|tail	phage tail family protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
AWQ74678.1|602308_606094_+	phage minor structural, N-terminal region domain protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
AWQ74339.1|606083_606236_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
AWQ73836.1|606282_606570_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
AWQ75057.1|606627_606924_+	hypothetical protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
AWQ74110.1|607115_607250_+	putative membrane protein	NA	D2JLG3	Staphylococcus_phage	100.0	9.3e-13
AWQ73556.1|607461_607716_+|holin	holin, phage phi LC3 family	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AWQ75613.1|607727_608483_+	CHAP domain protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AWQ75186.1|608673_609165_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
AWQ75177.1|609853_610150_+	bacterial SH3 domain protein	NA	A0A1P8L6B4	Staphylococcus_phage	100.0	1.3e-51
AWQ73946.1|610244_610694_-	chemotaxis inhibitory protein	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
AWQ74277.1|611378_611729_+	complement inhibitor	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
AWQ74061.1|611781_611973_-	putative membrane protein	NA	M9NS66	Staphylococcus_phage	100.0	1.7e-23
AWQ74834.1|612352_612532_-	putative membrane protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
AWQ74028.1|612903_613101_-	phospholipase C domain protein	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
>prophage 2
CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	702479	819570	2880689	bacteriocin,tRNA,transposase,protease	Staphylococcus_phage(86.76%)	105	NA	NA
AWQ74429.1|702479_703841_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
AWQ74370.1|704333_705395_+	phosphotransferase system, EIIC family protein	NA	NA	NA	NA	NA
AWQ74953.1|705652_707110_+	amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein	NA	NA	NA	NA	NA
AWQ75482.1|707102_707825_+	ABC transporter family protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
AWQ74747.1|707975_709103_+	epoxyqueuosine reductase	NA	NA	NA	NA	NA
AWQ75796.1|709107_709578_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
AWQ74358.1|709736_710336_+	glucosamine-6-phosphate isomerase family protein	NA	NA	NA	NA	NA
AWQ75275.1|710360_710513_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ73541.1|711289_711685_+	putative membrane protein	NA	NA	NA	NA	NA
AWQ73986.1|711880_713266_+	fumarate hydratase, class II	NA	NA	NA	NA	NA
AWQ73535.1|713728_714550_-	RNA pseudouridylate synthase family protein	NA	NA	NA	NA	NA
AWQ73948.1|714712_715825_+	histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein	NA	NA	NA	NA	NA
AWQ74586.1|715846_716470_+	response regulator	NA	NA	NA	NA	NA
AWQ73521.1|716825_717290_+	helix-turn-helix family protein	NA	NA	NA	NA	NA
AWQ73802.1|717468_718593_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ74475.1|718661_719006_+	hypothetical protein	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
AWQ73834.1|719777_720974_+	calcineurin-like phosphoesterase family protein	NA	NA	NA	NA	NA
AWQ74324.1|720963_723900_+	AAA domain protein	NA	NA	NA	NA	NA
AWQ75558.1|723896_724838_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
AWQ74903.1|724958_725921_-	foldase protein PrsA	NA	NA	NA	NA	NA
AWQ75670.1|726125_726683_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ75248.1|727415_727781_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ75529.1|727922_728345_-	protein hit	NA	NA	NA	NA	NA
AWQ74092.1|728478_729219_+	ABC transporter family protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
AWQ74893.1|729211_730435_+	bacterial ABC transporter EcsB family protein	NA	NA	NA	NA	NA
AWQ74178.1|730558_731062_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
AWQ73570.1|731324_732362_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AWQ75225.1|732419_733343_+	ferrochelatase	NA	NA	NA	NA	NA
AWQ75553.1|733366_734767_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
AWQ74217.1|735089_735644_+	serine hydrolase family protein	NA	NA	NA	NA	NA
AWQ75061.1|738246_738888_-	hypothetical protein	NA	A0A2H4PQI0	Staphylococcus_phage	94.8	1.1e-111
AWQ74406.1|738900_739356_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	1.7e-61
AWQ75707.1|740238_741174_+	leucotoxin LukEv	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
AWQ75241.1|741175_742159_+	leucotoxin LukDv	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
AWQ75135.1|743280_743424_+	lantibiotic gallidermin	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
AWQ73833.1|743488_746482_+|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain protein	bacteriocin	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
AWQ74458.1|746474_747719_+	lanthionine synthetase C-like family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
AWQ74004.1|747734_748253_+	epidermin decarboxylase	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
AWQ73895.1|748262_749636_+	subtilase family protein	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
AWQ73386.1|749658_750351_+	lantibiotic protection ABC transporter, ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
AWQ75581.1|750347_751109_+	lantibiotic protection ABC transporter permease subunit, MutE/EpiE family protein	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
AWQ73313.1|751105_751804_+	putative membrane protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
AWQ74962.1|752277_752844_-	hypothetical protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
AWQ75586.1|753807_754515_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
AWQ73325.1|754639_755362_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
AWQ73605.1|755419_756139_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
AWQ75503.1|756259_756979_+|protease	serine protease SplF	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AWQ75040.1|757136_757853_+|protease	serine protease SplF	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
AWQ73995.1|758003_758723_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
AWQ75759.1|759085_760642_+	type I restriction-modification system, M subunit	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
AWQ74083.1|760634_761834_+	type I restriction modification DNA specificity domain protein	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
AWQ73505.1|762683_766796_+	NACHT domain protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
AWQ75726.1|767316_767694_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ74736.1|768563_768707_+|transposase	transposase family protein	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
AWQ73439.1|769310_769694_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ75385.1|769704_769881_+	putative membrane protein	NA	NA	NA	NA	NA
AWQ75012.1|769882_770068_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ73704.1|770253_770823_+	hypothetical protein	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.3e-76
AWQ75405.1|771040_771592_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
AWQ75027.1|771689_772034_-	hypothetical protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
AWQ73677.1|772074_772545_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	80.1	7.0e-63
AWQ73928.1|772545_772701_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	96.9	4.7e-08
AWQ73499.1|772776_773772_-	hypothetical protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
AWQ73842.1|773852_774467_-	excalibur calcium-binding domain protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.3	9.5e-36
AWQ74452.1|774778_775261_+	putative lipoprotein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	2.5e-79
AWQ75401.1|775419_776898_+	O-succinylbenzoate-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
AWQ75063.1|776902_777904_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
AWQ75428.1|777900_778158_-	putative membrane protein insertion efficiency factor	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AWQ74316.1|778223_778697_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
AWQ74313.1|778677_779448_+	prolyl oligopeptidase family protein	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.3e-142
AWQ74262.1|779945_780308_+|transposase	transposase IS200 like family protein	transposase	A0A1P8BMC0	Lactococcus_phage	37.8	1.8e-10
AWQ75371.1|780443_782036_-	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AWQ74643.1|782406_783600_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AWQ75065.1|783724_784633_+	nuclease-related domain protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
AWQ74275.1|784844_785678_+	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
AWQ75595.1|785740_786349_-|transposase	transposase DDE domain protein	transposase	A0ZS58	Staphylococcus_virus	96.0	1.3e-109
AWQ73708.1|786381_787206_-|transposase	transposase DDE domain protein	transposase	A0ZS58	Staphylococcus_virus	98.2	1.7e-125
AWQ75393.1|787760_788114_-	crcB-like family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
AWQ74190.1|788110_788476_-	crcB-like family protein	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	2.0e-57
AWQ75541.1|788731_789034_-	putative membrane protein	NA	NA	NA	NA	NA
AWQ73729.1|789293_790007_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AWQ73925.1|790446_791082_-|protease	CAAX protease self-immunity family protein	protease	NA	NA	NA	NA
AWQ75133.1|791377_791821_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
AWQ74364.1|791807_791951_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ75074.1|792363_792834_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
AWQ75337.1|793032_793257_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ75540.1|793532_794387_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AWQ73880.1|794681_795077_-	arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
AWQ73385.1|795094_796387_-	arsenite/antimonite efflux pump membrane family protein	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	1.1e-227
AWQ74938.1|797223_798726_+	FAD-NAD(P)-binding family protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
AWQ73624.1|799206_800250_+	riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
AWQ74294.1|800256_800889_+	riboflavin synthase, alpha subunit	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
AWQ75025.1|800899_802081_+	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
AWQ73887.1|802093_802558_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
AWQ75454.1|802679_803681_-	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
AWQ74214.1|803914_804742_+	alpha/beta hydrolase family protein	NA	NA	NA	NA	NA
AWQ75630.1|805088_805580_+	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	91.6	2.4e-74
AWQ75414.1|805576_805801_+	hypothetical protein	NA	Q9MBP7	Staphylococcus_prophage	81.8	4.5e-20
AWQ74309.1|806320_806722_+	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
AWQ75013.1|806841_807405_-	rRNA methylase family protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AWQ74351.1|807401_808355_-	radical SAM superfamily protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AWQ73368.1|808503_809646_+	major Facilitator Superfamily protein	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	2.1e-209
AWQ75433.1|809936_812351_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
AWQ74579.1|812372_812684_+	rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
AWQ73406.1|813009_819570_+	sasC/Mrp/FmtB intercellular aggregation domain protein	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
>prophage 3
CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	945032	954075	2880689	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AWQ73323.1|945032_946037_+	holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
AWQ75955.1|946038_947064_+|tRNA	tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AWQ75148.1|947086_948226_+|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AWQ75121.1|948244_948505_+	preprotein translocase, YajC subunit	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AWQ75076.1|948779_951059_+	protein-export membrane protein SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AWQ73528.1|951261_953535_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
AWQ75949.1|953556_954075_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 4
CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	1023212	1031524	2880689		Caulobacter_phage(16.67%)	7	NA	NA
AWQ73567.1|1023212_1025012_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
AWQ74685.1|1025235_1026342_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AWQ74676.1|1026472_1027150_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ75736.1|1027152_1028253_+	NIF3 family protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
AWQ75790.1|1028366_1029713_+	helicase domain protein	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
AWQ74896.1|1029722_1030613_+	putative endonuclease 4	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
AWQ74513.1|1030738_1031524_+	ABC transporter family protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 5
CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	1087412	1174593	2880689	head,portal,capsid,tRNA,holin,terminase,integrase,protease,tail	Staphylococcus_phage(83.12%)	104	1092318:1092338	1138211:1138231
AWQ75380.1|1087412_1089107_+	sensor protein SrrB	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
AWQ74719.1|1089411_1090281_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ74070.1|1090273_1091119_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ75298.1|1091145_1092300_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.7	3.9e-115
1092318:1092338	attL	AGGGCAAAAAAAGGGCGGATT	NA	NA	NA	NA
AWQ74065.1|1092342_1093548_-|integrase	phage integrase family protein	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
AWQ74943.1|1093673_1094288_+	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
AWQ73886.1|1094284_1094410_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	3.3e-12
AWQ74770.1|1094520_1094916_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
AWQ74253.1|1094944_1095379_-	putative translation initiation factor IF-2	NA	A0A2I6PEM0	Staphylococcus_phage	96.5	3.6e-21
AWQ75049.1|1095396_1095768_-	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	99.2	1.6e-65
AWQ73326.1|1095870_1096200_-	helix-turn-helix family protein	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
AWQ75161.1|1096360_1096552_+	helix-turn-helix family protein	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
AWQ75774.1|1096635_1096812_+	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
AWQ74684.1|1096808_1097027_-	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	98.6	9.2e-34
AWQ75197.1|1097094_1097310_+	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
AWQ74084.1|1097334_1097598_+	homeo-like domain protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
AWQ75468.1|1097863_1098181_+	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
AWQ73369.1|1098173_1098476_+	hypothetical protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
AWQ75619.1|1098480_1098741_+	hypothetical protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
AWQ73409.1|1098754_1099117_+	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
AWQ74301.1|1099113_1100280_+	hypothetical protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
AWQ73953.1|1100305_1100863_+	hypothetical protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
AWQ75290.1|1100921_1102883_+	DNA polymerase A family protein	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
AWQ75115.1|1102895_1103081_+	hypothetical protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
AWQ74733.1|1103080_1103482_+	PVL ORF-50-like family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
AWQ73534.1|1103481_1103739_+	hypothetical protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
AWQ75951.1|1103741_1103942_+	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
AWQ74444.1|1103956_1104199_+	phage family protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
AWQ73774.1|1104213_1104462_+	hypothetical protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
AWQ74239.1|1104454_1104991_+	dUTPase family protein	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
AWQ73411.1|1105027_1105234_+	hypothetical protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
AWQ75539.1|1105230_1105434_+	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
AWQ74476.1|1105426_1105663_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
AWQ75031.1|1105655_1106042_+	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
AWQ74973.1|1106038_1106191_+	transcriptional activator RinB family protein	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
AWQ73428.1|1106258_1106459_+	hypothetical protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
AWQ73341.1|1106746_1109194_+	virulence-associated E family protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
AWQ73892.1|1109217_1109340_-	hypothetical protein	NA	Q4ZCF9	Staphylococcus_virus	95.0	6.9e-15
AWQ75922.1|1109534_1109825_+	VRR-NUC domain protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
AWQ74042.1|1109814_1111173_+	type III restriction enzyme, res subunit	NA	A0A1X9IH01	Staphylococcus_phage	99.8	2.8e-261
AWQ73736.1|1111185_1111623_+	phage transcriptional regulator, RinA family protein	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
AWQ75246.1|1111779_1112094_+	HNH endonuclease family protein	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
AWQ74657.1|1112220_1112526_+|terminase	phage terminase, small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
AWQ73584.1|1112515_1114207_+	phage Terminase family protein	NA	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
AWQ73783.1|1114211_1115450_+|portal	phage portal protein, HK97 family	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
AWQ73347.1|1115433_1116207_+|protease	clp protease family protein	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
AWQ75003.1|1116218_1117382_+|capsid	phage major capsid protein, HK97 family	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
AWQ74431.1|1117450_1117729_+|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
AWQ75867.1|1117740_1118073_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
AWQ75590.1|1118069_1118471_+	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
AWQ74509.1|1118471_1118867_+	hypothetical protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
AWQ74869.1|1118901_1119543_+|tail	phage major tail, phi13 family protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
AWQ73763.1|1119634_1120090_+	bacterial Ig-like domain family protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
AWQ74426.1|1120147_1120498_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
AWQ75194.1|1120539_1120698_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
AWQ73857.1|1120711_1126912_+|tail	phage tail tape measure protein, TP901 family, core region	tail	A0A1X9IGU9	Staphylococcus_phage	99.7	0.0e+00
AWQ75596.1|1126911_1127736_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
AWQ73899.1|1127744_1129328_+|tail	prophage endopeptidase tail family protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
AWQ75171.1|1129327_1129618_+	putative phage protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
AWQ73561.1|1129633_1131544_+	putative minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
AWQ75030.1|1131543_1133010_+	hypothetical protein	NA	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
AWQ75169.1|1133009_1133399_+	hypothetical protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
AWQ75868.1|1133391_1133556_+	hypothetical protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
AWQ75569.1|1133601_1133901_+	hypothetical protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
AWQ75480.1|1134036_1134339_+|holin	holin, SPP1 family	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
AWQ73797.1|1134349_1135804_+	N-acetylmuramoyl-L-alanine amidase family protein	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
AWQ75874.1|1136193_1137132_+	gamma-hemolysin component C	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
AWQ74653.1|1137133_1138111_+	lukF-PV	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	7.5e-184
AWQ75954.1|1138359_1138545_+	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	1.7e-25
1138211:1138231	attR	AGGGCAAAAAAAGGGCGGATT	NA	NA	NA	NA
AWQ75899.1|1138635_1139553_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ74582.1|1139609_1140548_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ74948.1|1140540_1140747_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ75945.1|1140761_1141676_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ75749.1|1141874_1141994_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ73711.1|1142272_1142818_+	riboflavin transporter RibU	NA	NA	NA	NA	NA
AWQ73744.1|1142923_1143172_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
AWQ73557.1|1143279_1144233_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ75948.1|1144222_1145602_+	ATP-dependent DNA helicase, RecQ family protein	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
AWQ74523.1|1145754_1147215_+	elastin-binding protein EbpS	NA	NA	NA	NA	NA
AWQ73580.1|1147616_1148603_+	pyridine nucleotide-disulfide oxidoreductase family protein	NA	NA	NA	NA	NA
AWQ75119.1|1148717_1149686_-	asparaginase family protein	NA	NA	NA	NA	NA
AWQ73808.1|1149762_1150422_+	cytidylate kinase	NA	NA	NA	NA	NA
AWQ74872.1|1150452_1150569_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ74389.1|1151133_1152309_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AWQ73588.1|1152530_1153841_+	GTP-binding protein Era	NA	NA	NA	NA	NA
AWQ75044.1|1153857_1154856_+	NAD-dependent glycerol-3-phosphate dehydrogenase family protein	NA	NA	NA	NA	NA
AWQ75205.1|1155026_1155299_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
AWQ75309.1|1155729_1156302_+	heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 family protein	NA	NA	NA	NA	NA
AWQ75478.1|1156304_1157030_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
AWQ75417.1|1157031_1157991_+	heptaprenyl diphosphate synthase component 2	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
AWQ74709.1|1158082_1158532_+	nucleoside diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
AWQ73678.1|1159326_1160493_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
AWQ75211.1|1160518_1161583_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
AWQ75212.1|1161592_1162891_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AWQ73442.1|1162897_1164142_+	TPR repeat family protein	NA	NA	NA	NA	NA
AWQ75906.1|1164155_1164731_+	hypothetical protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
AWQ75635.1|1164720_1165308_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ75442.1|1165361_1166060_+	neutral zinc metallopeptidase family protein	NA	NA	NA	NA	NA
AWQ75109.1|1166396_1166714_+	mazG nucleotide pyrophosphohydrolase domain protein	NA	NA	NA	NA	NA
AWQ75665.1|1166954_1168097_+	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
AWQ73542.1|1168101_1169304_+|head	poly A polymerase head domain protein	head	H7BUW3	unidentified_phage	42.5	3.2e-35
AWQ73739.1|1169290_1170262_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AWQ74200.1|1170285_1172979_+	hypothetical protein	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
AWQ75408.1|1173300_1174593_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
>prophage 6
CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	1236369	1262050	2880689	protease,lysis,transposase	Lactococcus_phage(18.18%)	24	NA	NA
AWQ74655.1|1236369_1237860_+|protease	putative CtpA-like serine protease	protease	A0A0R6PIZ1	Moraxella_phage	30.5	2.3e-22
AWQ74787.1|1238259_1238769_+	acetyltransferase domain protein	NA	NA	NA	NA	NA
AWQ75764.1|1238780_1239851_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
AWQ75139.1|1239867_1240482_+	PAP2 superfamily protein	NA	NA	NA	NA	NA
AWQ75113.1|1240612_1241098_-|transposase	transposase IS200 like family protein	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
AWQ74314.1|1242011_1242671_+	response regulator	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
AWQ74124.1|1242667_1244023_+	signal transduction histidine-protein kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
AWQ75368.1|1244306_1247105_+	oxoglutarate dehydrogenase (succinyl-transferring), E1 component	NA	NA	NA	NA	NA
AWQ75686.1|1247118_1248387_+	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AWQ75740.1|1248966_1249776_+	putative lactoylglutathione lyase	NA	NA	NA	NA	NA
AWQ73944.1|1249804_1250008_+	putative hypothetical protein YozC	NA	NA	NA	NA	NA
AWQ74525.1|1250188_1250980_+	ATPase associated with various cellular activities family protein	NA	R4TG24	Halovirus	28.2	2.1e-11
AWQ75642.1|1250993_1252880_+	cobalamin biosynthesis CobT VWA domain protein	NA	NA	NA	NA	NA
AWQ74696.1|1253104_1254448_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
AWQ73480.1|1254800_1255193_+|transposase	transposase DDE domain protein	transposase	A0A146ICT8	Staphylococcus_phage	93.2	7.7e-15
AWQ75593.1|1255222_1255405_+|transposase	putative transposase	transposase	Q9MBP7	Staphylococcus_prophage	88.3	5.1e-22
AWQ74108.1|1255545_1256559_-|transposase	transposase IS116/IS110/IS902 family protein	transposase	A0A1X9I619	Streptococcus_phage	38.0	6.0e-51
AWQ75907.1|1257019_1258156_-	telA-like protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	7.4e-34
AWQ74915.1|1258187_1258811_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	lysis	NA	NA	NA	NA
AWQ73620.1|1258835_1259105_-	acylphosphatase family protein	NA	NA	NA	NA	NA
AWQ74387.1|1259267_1259576_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ75329.1|1259746_1259947_+	cold shock protein CspA	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
AWQ74380.1|1260143_1260545_+	putative membrane protein	NA	NA	NA	NA	NA
AWQ75857.1|1260784_1262050_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.2	6.2e-13
>prophage 7
CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	1355185	1361229	2880689	head	Staphylococcus_phage(66.67%)	10	NA	NA
AWQ74928.1|1355185_1355320_-	hypothetical protein	NA	Q4ZE35	Staphylococcus_virus	76.2	2.9e-14
AWQ73936.1|1355522_1355648_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ74323.1|1355656_1355773_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ73782.1|1356199_1356448_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ73456.1|1356568_1357153_-|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	Q4ZE35	Staphylococcus_virus	72.0	2.0e-30
AWQ74618.1|1357198_1357450_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ75524.1|1358194_1358380_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
AWQ75229.1|1359618_1359825_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
AWQ75354.1|1360118_1360331_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	3.1e-18
AWQ74703.1|1361031_1361229_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
>prophage 8
CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	1617895	1626368	2880689		Synechococcus_phage(33.33%)	9	NA	NA
AWQ74500.1|1617895_1618462_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
AWQ75018.1|1618464_1619493_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
AWQ74056.1|1619485_1620970_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
AWQ75591.1|1620948_1623138_-	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
AWQ75822.1|1623130_1623802_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
AWQ73597.1|1623803_1624067_-	phosphoribosylformylglycinamidine synthase, purS protein	NA	NA	NA	NA	NA
AWQ74281.1|1624066_1624771_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AWQ75308.1|1624774_1625899_-	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AWQ74266.1|1625885_1626368_-	phosphoribosylaminoimidazole carboxylase, catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 9
CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	1790684	1806512	2880689	terminase,capsid,integrase	Staphylococcus_phage(64.71%)	21	1790005:1790021	1803960:1803976
1790005:1790021	attL	TTATTTAGCAGGAATAA	NA	NA	NA	NA
AWQ74152.1|1790684_1791239_+	putative penicillin binding protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
AWQ74076.1|1791473_1792442_-	abi-like family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
AWQ75629.1|1792870_1793362_-|terminase	putative terminase small subunit	terminase	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	7.9e-25
AWQ75763.1|1793545_1794604_-|capsid	phage capsid family protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
AWQ73918.1|1794590_1794797_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ74567.1|1795021_1795366_-	putative interference protein with phage growth	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
AWQ74278.1|1796036_1798409_-	phage/plasmid primase, P4 family, C-terminal domain protein	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	9.8e-137
AWQ75985.1|1798500_1798749_-	hypothetical protein	NA	Q4ZE75	Staphylococcus_phage	58.6	1.4e-22
AWQ75222.1|1798749_1799133_-	putative pathogenicity island protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
AWQ74038.1|1799134_1799338_-	putative pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
AWQ74839.1|1799304_1799478_-	pathogenicity island family protein	NA	NA	NA	NA	NA
AWQ73941.1|1799489_1799762_-	putative pathogenicity island DNA-binding protein	NA	Q4ZE77	Staphylococcus_phage	88.9	4.8e-40
AWQ74180.1|1799777_1800017_-	helix-turn-helix family protein	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	88.6	7.7e-34
AWQ73816.1|1800209_1800542_+	helix-turn-helix family protein	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
AWQ74279.1|1800553_1801012_+	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	82.1	4.3e-65
AWQ73613.1|1801028_1801757_+	toxin beta-grasp domain protein	NA	A0EX09	Staphylococcus_phage	34.1	1.6e-26
AWQ74902.1|1801780_1802509_+	toxin beta-grasp domain protein	NA	A0EX09	Staphylococcus_phage	31.8	1.2e-21
AWQ75762.1|1802596_1803817_+|integrase	phage integrase family protein	integrase	Q4ZE80	Staphylococcus_phage	47.5	2.9e-100
AWQ74394.1|1803959_1804781_-	NLPA lipofamily protein	NA	NA	NA	NA	NA
1803960:1803976	attR	TTATTTAGCAGGAATAA	NA	NA	NA	NA
AWQ75956.1|1804798_1805452_-	methionine import system permease protein MetP	NA	NA	NA	NA	NA
AWQ74051.1|1805486_1806512_-	methionine import ATP-binding protein MetN 2	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
>prophage 10
CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	1885164	1899895	2880689		uncultured_Caudovirales_phage(50.0%)	12	NA	NA
AWQ73872.1|1885164_1885926_-	ABC transporter family protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
AWQ75652.1|1885922_1886879_-	fecCD transport family protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AWQ73859.1|1886865_1887837_-	fecCD transport family protein	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
AWQ75107.1|1888544_1889516_-	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AWQ75993.1|1889633_1891739_-	ribonucleoside-diphosphate reductase, alpha subunit	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AWQ75372.1|1891701_1892100_-	nrdI protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AWQ73527.1|1892900_1893767_+	eamA-like transporter family protein	NA	NA	NA	NA	NA
AWQ73599.1|1893786_1894287_+	7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AWQ73525.1|1894627_1896133_+	H+ symporter family protein	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AWQ75259.1|1896402_1897320_+	putative lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
AWQ75733.1|1897943_1898486_-	putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AWQ75877.1|1898836_1899895_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 11
CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	1911867	1919687	2880689		Pandoravirus(16.67%)	10	NA	NA
AWQ75690.1|1911867_1913019_-	chorismate binding enzyme family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
AWQ74345.1|1913002_1913596_-	glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AWQ75432.1|1913946_1914615_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AWQ75769.1|1914616_1915036_+	queuosine biosynthesis protein QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AWQ74623.1|1915039_1915753_+	7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AWQ75880.1|1915851_1916436_+	putative membrane protein	NA	NA	NA	NA	NA
AWQ73869.1|1916715_1917156_+	electron transfer DM13 family protein	NA	NA	NA	NA	NA
AWQ74096.1|1917497_1917971_+	doxX family protein	NA	NA	NA	NA	NA
AWQ73501.1|1917945_1918632_+	response regulator	NA	NA	NA	NA	NA
AWQ74877.1|1918631_1919687_+	histidine protein kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
>prophage 12
CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	2625064	2668579	2880689	transposase,integrase	Staphylococcus_phage(50.0%)	49	2627505:2627524	2667845:2667864
AWQ75010.1|2625064_2626078_-|transposase	transposase IS116/IS110/IS902 family protein	transposase	A0A1X9I619	Streptococcus_phage	38.0	6.0e-51
AWQ74018.1|2626564_2627380_-	prolyl oligopeptidase family protein	NA	NA	NA	NA	NA
2627505:2627524	attL	TATAGGTTCTGTTGCAAAGT	NA	NA	NA	NA
AWQ75160.1|2627567_2627933_-	DDE domain protein	NA	A0A0N9RU54	Staphylococcus_phage	95.9	1.3e-61
AWQ74020.1|2627995_2628241_-|transposase	putative transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.5	1.9e-32
AWQ73860.1|2628498_2628666_+	HMG-CoA synthase domain protein	NA	NA	NA	NA	NA
AWQ73582.1|2629502_2630246_+	glycerophosphoryl diester phosphodiesterase family protein	NA	NA	NA	NA	NA
AWQ74198.1|2630342_2630771_+	maoC like domain protein	NA	NA	NA	NA	NA
AWQ74791.1|2630816_2632823_-	penicillin-binding protein 2'	NA	NA	NA	NA	NA
AWQ74479.1|2632922_2633909_+	blaR1 peptidase M56 family protein	NA	NA	NA	NA	NA
AWQ75110.1|2633871_2634141_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ74395.1|2634131_2635655_-|transposase	transposase DDE domain protein	transposase	A0ZS58	Staphylococcus_virus	75.0	4.7e-209
AWQ75662.1|2635790_2636297_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ75647.1|2636311_2636623_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ73875.1|2636709_2637060_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ74026.1|2637581_2639210_-	resolvase, N terminal domain protein	NA	A0A0S2SXR4	Bacillus_phage	31.4	5.4e-46
AWQ74123.1|2639231_2640581_-	resolvase, N terminal domain protein	NA	Q9T200	Bacillus_phage	24.8	1.4e-18
AWQ76001.1|2640814_2642602_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ73451.1|2642601_2642892_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ74188.1|2643030_2644080_+	putative actin depolymerizing protein	NA	NA	NA	NA	NA
AWQ73371.1|2644752_2646243_+	divergent AAA domain protein	NA	NA	NA	NA	NA
AWQ75096.1|2646615_2646789_-	putative rhodanese-like protein	NA	NA	NA	NA	NA
AWQ74341.1|2646866_2647871_-	metallo-beta-lactamase superfamily protein	NA	NA	NA	NA	NA
AWQ75513.1|2647989_2648127_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ74411.1|2648123_2648495_+	HNH endonuclease family protein	NA	NA	NA	NA	NA
AWQ73396.1|2648623_2649244_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ73576.1|2650160_2650331_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ75532.1|2650732_2651698_+	HNH endonuclease family protein	NA	NA	NA	NA	NA
AWQ73894.1|2651794_2651986_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ75803.1|2652077_2652407_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ74637.1|2652483_2652843_-	tic20-like family protein	NA	NA	NA	NA	NA
AWQ73992.1|2653413_2654223_-|integrase	integrase core domain protein	integrase	A0A0N9SIX5	Staphylococcus_phage	94.8	6.4e-56
AWQ74297.1|2654242_2654425_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ74832.1|2654735_2655233_-	acetyltransferase family protein	NA	NA	NA	NA	NA
AWQ75332.1|2655420_2655549_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ74591.1|2655730_2656858_+	zinc-binding dehydrogenase family protein	NA	A0A2K9L7I1	Tupanvirus	30.9	6.9e-16
AWQ75042.1|2657112_2657337_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ73699.1|2657350_2657854_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ73929.1|2657869_2658181_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ75522.1|2658267_2658618_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ74419.1|2659601_2660426_+|integrase	integrase core domain protein	integrase	A0A0N9SIX5	Staphylococcus_phage	89.4	2.9e-64
AWQ73764.1|2660525_2661455_-	carbamate kinase	NA	NA	NA	NA	NA
AWQ73400.1|2661474_2662473_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
AWQ74920.1|2662510_2663200_-	HTH-type transcriptional regulator ArcR	NA	NA	NA	NA	NA
AWQ75202.1|2663241_2664663_-	arginine-ornithine antiporter	NA	NA	NA	NA	NA
AWQ75159.1|2664748_2665984_-	arginine deiminase	NA	NA	NA	NA	NA
AWQ74918.1|2666252_2666699_-	arginine repressor, C-terminal domain protein	NA	NA	NA	NA	NA
AWQ73792.1|2667200_2667632_+	universal stress family protein	NA	NA	NA	NA	NA
AWQ75305.1|2667708_2667861_-	putative cadmium-transporting ATPase domain protein	NA	NA	NA	NA	NA
AWQ75104.1|2667904_2668579_+|transposase	transposase IS66 family protein	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
2667845:2667864	attR	TATAGGTTCTGTTGCAAAGT	NA	NA	NA	NA
>prophage 1
CP029665	Staphylococcus aureus strain AR_0226 plasmid unnamed1, complete sequence	26984	19250	26884	26984		Staphylococcus_phage(42.86%)	9	NA	NA
AWQ76008.1|19250_19829_+	resolvase, N terminal domain protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	4.9e-42
AWQ76022.1|20498_21173_+	DDE domain protein	NA	A0A0N9SKD3	Staphylococcus_phage	99.6	6.8e-128
AWQ76012.1|21341_21707_-	WYL domain protein	NA	E4ZFP5	Streptococcus_phage	100.0	1.9e-63
AWQ76031.1|22188_22983_-	aminoglycoside 3'-phosphotransferase	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
AWQ76025.1|23075_23522_-	putative streptothricin acetyltransferase	NA	A0A1B0RXL7	Streptococcus_phage	82.2	2.3e-79
AWQ76024.1|24294_24969_-	DDE domain protein	NA	A0A0N9SKD3	Staphylococcus_phage	98.7	2.6e-127
AWQ76013.1|24998_25202_-	bacitracin resistance BacA family protein	NA	NA	NA	NA	NA
AWQ76016.1|25215_25905_-	ABC-2 transporter family protein	NA	NA	NA	NA	NA
AWQ76036.1|25945_26884_-	ABC transporter family protein	NA	A0A2H4PQG7	Staphylococcus_phage	42.2	1.0e-41
