assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003203595.1_ASM320359v1	CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	1	308975-309168	1	CRT	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	3	11	308998-309030|308998-309030|308998-309030|309054-309089|309054-309089|309054-309089|309054-309089|309113-309145|309113-309145|309113-309145|309113-309145	CP029664.1_31619-31651|CP029664.1_1319162-1319130|CP029664.1_1527262-1527230|CP029664.1_1527318-1527283|CP029664.1_824634-824599|CP029664.1_657163-657198|CP029664.1_1003113-1003148|CP029664.1_31619-31651|CP029664.1_1228288-1228320|CP029664.1_1319162-1319130|CP029664.1_1527262-1527230	NA	3	3	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA|40aa|down_4|CP029664.1_312586_312706_+,NA|106aa|down_7|CP029664.1_317913_318231_-,NA|55aa|down_8|CP029664.1_318475_318640_-	NA|202aa|up_9|CP029664.1_301869_302475_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|CP029664.1_302644_303649_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|CP029664.1_303679_304186_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|CP029664.1_304187_304682_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|CP029664.1_304744_306004_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|CP029664.1_306000_306486_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|CP029664.1_306499_306946_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|CP029664.1_306951_307185_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|CP029664.1_307191_307791_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|CP029664.1_307810_308833_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|117aa|down_0|CP029664.1_309523_309874_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_1|CP029664.1_309975_311187_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_2|CP029664.1_311179_311620_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_3|CP029664.1_311781_312546_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|40aa|down_4|CP029664.1_312586_312706_+	NA	NA|422aa|down_5|CP029664.1_313177_314443_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_6|CP029664.1_314559_317727_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_7|CP029664.1_317913_318231_-	NA	NA|55aa|down_8|CP029664.1_318475_318640_-	NA	NA|303aa|down_9|CP029664.1_318772_319681_+	COG0679, COG0679, Predicted permeases [General function prediction only]
GCA_003203595.1_ASM320359v1	CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2	432923-433073	1	CRISPRCasFinder	no	csa3	WYL,csa3,DEDDh,cas3,DinG	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA|364aa|down_0|CP029664.1_433090_434182_-,NA|77aa|down_5|CP029664.1_437970_438201_+	NA|667aa|up_9|CP029664.1_417576_419577_+	pfam07564, DUF1542, Domain of Unknown Function (DUF1542)	NA|369aa|up_8|CP029664.1_419895_421002_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|CP029664.1_421001_421436_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|CP029664.1_421447_423580_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|CP029664.1_423614_425153_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|CP029664.1_425833_427639_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|CP029664.1_427870_428653_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|CP029664.1_428720_429578_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|379aa|up_1|CP029664.1_430663_431800_+	pfam02037, SAP, SAP domain	NA|68aa|up_0|CP029664.1_431858_432062_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|364aa|down_0|CP029664.1_433090_434182_-	NA	NA|327aa|down_1|CP029664.1_434447_435428_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|CP029664.1_435429_435750_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|CP029664.1_435901_436567_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|CP029664.1_437001_437940_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|CP029664.1_437970_438201_+	NA	NA|458aa|down_6|CP029664.1_438872_440246_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|CP029664.1_440703_441117_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|CP029664.1_441316_441760_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|CP029664.1_441880_442591_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCA_003203595.1_ASM320359v1	CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	3	667946-668024	2	CRISPRCasFinder	no	DEDDh	WYL,csa3,DEDDh,cas3,DinG	Unclear	TGCAGGTTGGCGGGGCCCCAACA	23	1	5	667969-668001|667969-668001|667969-668001|667969-668001|667969-668001	CP029664.1_31619-31651|CP029664.1_1003055-1003087|CP029664.1_1319162-1319130|CP029664.1_1527262-1527230|CP029664.1_1228288-1228320	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|151aa|up_1|CP029664.1_665750_666203_+,NA|129aa|down_1|CP029664.1_669181_669568_+,NA|92aa|down_6|CP029664.1_673553_673829_-	NA|316aa|up_9|CP029664.1_657309_658257_+	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|454aa|up_8|CP029664.1_658337_659699_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|177aa|up_7|CP029664.1_659868_660399_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|up_6|CP029664.1_660645_661716_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_5|CP029664.1_661783_662338_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|167aa|up_4|CP029664.1_662726_663227_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_3|CP029664.1_663518_664832_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_2|CP029664.1_664833_665565_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|151aa|up_1|CP029664.1_665750_666203_+	NA	NA|329aa|up_0|CP029664.1_666692_667679_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|CP029664.1_668206_668965_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|CP029664.1_669181_669568_+	NA	NA|234aa|down_2|CP029664.1_669582_670284_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|CP029664.1_670280_671324_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|CP029664.1_671313_671943_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|CP029664.1_672058_673276_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|CP029664.1_673553_673829_-	NA	NA|155aa|down_7|CP029664.1_673835_674300_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|CP029664.1_674446_674647_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|416aa|down_9|CP029664.1_674658_675906_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCA_003203595.1_ASM320359v1	CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	4	1744983-1745291	2,3	CRT,CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CCAACTTGCANNNTNTNNNNAGCTGNCTTT,CCAGCCTCTGTGTTGGGGCCCCG	30,23	3	3	1745096-1745121|1745210-1745235|1745236-1745268	CP029664.1_2308801-2308826|CP029664.1_1888354-1888379|CP029664.1_1807746-1807714	NA:NA	4,1	4	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|301aa|up_9|CP029664.1_1729107_1730010_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|CP029664.1_1730175_1733829_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|CP029664.1_1733829_1737306_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|CP029664.1_1737465_1738041_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|CP029664.1_1738056_1738581_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|CP029664.1_1738585_1739161_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|CP029664.1_1739485_1740817_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|CP029664.1_1741167_1742373_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|CP029664.1_1742362_1743742_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|CP029664.1_1743983_1744913_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|CP029664.1_1745415_1746660_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|CP029664.1_1746768_1747959_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|CP029664.1_1748266_1749394_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|CP029664.1_1749755_1750133_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|CP029664.1_1750548_1751142_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|CP029664.1_1751205_1751589_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|CP029664.1_1751719_1754125_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|CP029664.1_1754117_1754546_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|85aa|down_8|CP029664.1_1754632_1754887_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|CP029664.1_1754879_1756376_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCA_003203595.1_ASM320359v1	CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	5	1807994-1808075	4	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	1808018-1808051|1808018-1808051	CP029664.1_1228333-1228366|CP029664.1_1319117-1319084	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA|38aa|down_1|CP029664.1_1809058_1809172_-	NA|111aa|up_9|CP029664.1_1800209_1800542_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|153aa|up_8|CP029664.1_1800553_1801012_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|243aa|up_7|CP029664.1_1801028_1801757_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|up_6|CP029664.1_1801780_1802509_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|407aa|up_5|CP029664.1_1802596_1803817_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|274aa|up_4|CP029664.1_1803959_1804781_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|218aa|up_3|CP029664.1_1804798_1805452_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|CP029664.1_1805486_1806512_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|CP029664.1_1806761_1807058_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|CP029664.1_1807050_1807437_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|CP029664.1_1808178_1809057_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|CP029664.1_1809058_1809172_-	NA	NA|127aa|down_2|CP029664.1_1809235_1809616_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|CP029664.1_1809773_1810130_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|CP029664.1_1810273_1810594_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|CP029664.1_1810743_1811283_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|CP029664.1_1811365_1812082_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|CP029664.1_1812229_1812652_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|CP029664.1_1813050_1813545_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|CP029664.1_1813699_1814317_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCA_003203595.1_ASM320359v1	CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	6	1843962-1844054	5	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	AGTTGGGGTGGGGCCCCAACATAGTGAAATTGG	33	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|153aa|up_6|CP029664.1_1835491_1835950_-,NA	NA|791aa|up_9|CP029664.1_1831929_1834302_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|247aa|up_8|CP029664.1_1834335_1835076_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|up_7|CP029664.1_1835191_1835425_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|153aa|up_6|CP029664.1_1835491_1835950_-	NA	NA|435aa|up_5|CP029664.1_1836289_1837594_-	PRK00077, eno, enolase; Provisional	NA|506aa|up_4|CP029664.1_1837723_1839241_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|254aa|up_3|CP029664.1_1839243_1840005_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_2|CP029664.1_1840126_1841317_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_1|CP029664.1_1841455_1842466_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_0|CP029664.1_1842518_1843532_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|down_0|CP029664.1_1844291_1844921_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|down_1|CP029664.1_1845622_1846525_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|down_2|CP029664.1_1846767_1847355_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|down_3|CP029664.1_1847928_1848873_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|down_4|CP029664.1_1848982_1849978_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|down_5|CP029664.1_1849974_1850886_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_6|CP029664.1_1851707_1852643_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_7|CP029664.1_1852709_1854149_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|94aa|down_8|CP029664.1_1854156_1854438_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|280aa|down_9|CP029664.1_1854649_1855489_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed
GCA_003203595.1_ASM320359v1	CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	7	1851122-1851346	1,6	PILER-CR,CRISPRCasFinder	no	cas3	WYL,csa3,DEDDh,cas3,DinG	Unclear	GGGGCCCCAACACAGA,AAAGTCAGCTTACAATAATGTGCAAGTTGG	16,30	3	10	1851138-1851179|1851138-1851179|1851138-1851179|1851138-1851179|1851138-1851179|1851138-1851179|1851138-1851179|1851252-1851291|1851291-1851316|1851291-1851316	CP029664.1_1228234-1228275|CP029664.1_1319216-1319175|CP029664.1_1601591-1601632|CP029664.1_116069-116028|CP029664.1_666575-666616|CP029664.1_1003117-1003158|CP029664.1_1843930-1843971|CP029664.1_1531226-1531187|CP029664.1_1888379-1888354|CP029664.1_1888323-1888298	NA:NA	3,1	3	Unclear	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|254aa|up_9|CP029664.1_1839243_1840005_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_8|CP029664.1_1840126_1841317_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_7|CP029664.1_1841455_1842466_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_6|CP029664.1_1842518_1843532_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|up_5|CP029664.1_1844291_1844921_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_4|CP029664.1_1845622_1846525_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_3|CP029664.1_1846767_1847355_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_2|CP029664.1_1847928_1848873_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_1|CP029664.1_1848982_1849978_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|CP029664.1_1849974_1850886_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|CP029664.1_1851707_1852643_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|CP029664.1_1852709_1854149_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|94aa|down_2|CP029664.1_1854156_1854438_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|280aa|down_3|CP029664.1_1854649_1855489_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|CP029664.1_1855494_1856427_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|CP029664.1_1857088_1859935_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|CP029664.1_1859942_1861928_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_7|CP029664.1_1862196_1862433_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_8|CP029664.1_1862429_1863080_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_9|CP029664.1_1863253_1864093_-	COG3942, COG3942, Surface antigen [General function prediction only]
GCA_003203595.1_ASM320359v1	CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	8	1950648-1950746	7	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CCCCTTTTAATTTATTAATTAGGGGCTCTT	30	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|100aa|up_5|CP029664.1_1946667_1946967_-,NA|230aa|up_2|CP029664.1_1948136_1948826_+,NA|39aa|down_2|CP029664.1_1952601_1952718_-	NA|228aa|up_9|CP029664.1_1944237_1944921_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|153aa|up_8|CP029664.1_1944923_1945382_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|189aa|up_7|CP029664.1_1945383_1945950_+	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|181aa|up_6|CP029664.1_1946045_1946588_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|100aa|up_5|CP029664.1_1946667_1946967_-	NA	NA|132aa|up_4|CP029664.1_1947104_1947500_-	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|106aa|up_3|CP029664.1_1947566_1947884_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|230aa|up_2|CP029664.1_1948136_1948826_+	NA	NA|163aa|up_1|CP029664.1_1948924_1949413_-	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|405aa|up_0|CP029664.1_1949409_1950624_-	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|289aa|down_0|CP029664.1_1950830_1951697_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|215aa|down_1|CP029664.1_1951812_1952457_-	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|39aa|down_2|CP029664.1_1952601_1952718_-	NA	NA|158aa|down_3|CP029664.1_1952809_1953283_-	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|239aa|down_4|CP029664.1_1953282_1953999_-	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|120aa|down_5|CP029664.1_1954188_1954548_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|660aa|down_6|CP029664.1_1954863_1956843_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|215aa|down_7|CP029664.1_1957539_1958184_-	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|266aa|down_8|CP029664.1_1958544_1959342_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|336aa|down_9|CP029664.1_1959929_1960937_-	pfam01384, PHO4, Phosphate transporter family
GCA_003203595.1_ASM320359v1	CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	9	2027003-2027095	8	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	32	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|239aa|up_5|CP029664.1_2021870_2022587_-,NA|169aa|up_4|CP029664.1_2022748_2023255_-,NA	NA|118aa|up_9|CP029664.1_2018219_2018573_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|187aa|up_8|CP029664.1_2018780_2019341_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|125aa|up_7|CP029664.1_2020288_2020663_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|CP029664.1_2020913_2021702_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|CP029664.1_2021870_2022587_-	NA	NA|169aa|up_4|CP029664.1_2022748_2023255_-	NA	NA|267aa|up_3|CP029664.1_2023390_2024191_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|CP029664.1_2024174_2024894_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|329aa|up_1|CP029664.1_2024948_2025935_-	pfam01032, FecCD, FecCD transport family	NA|296aa|up_0|CP029664.1_2026046_2026934_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|CP029664.1_2027312_2027948_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|CP029664.1_2028335_2029997_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|139aa|down_2|CP029664.1_2029993_2030410_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|CP029664.1_2030684_2031695_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|169aa|down_4|CP029664.1_2032193_2032700_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|CP029664.1_2032742_2034038_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|CP029664.1_2034077_2034554_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|CP029664.1_2034722_2035259_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|CP029664.1_2035469_2036408_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|208aa|down_9|CP029664.1_2036677_2037301_-	pfam04276, DUF443, Protein of unknown function (DUF443)
GCA_003203595.1_ASM320359v1	CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	10	2270059-2270160	9	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|179aa|up_7|CP029664.1_2261677_2262214_+,NA|221aa|up_1|CP029664.1_2268305_2268968_+,NA|86aa|down_4|CP029664.1_2275957_2276215_+,NA|128aa|down_6|CP029664.1_2277168_2277552_+	NA|91aa|up_9|CP029664.1_2259909_2260182_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|CP029664.1_2260580_2261285_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|CP029664.1_2261677_2262214_+	NA	NA|514aa|up_6|CP029664.1_2262326_2263868_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|CP029664.1_2263892_2265359_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|CP029664.1_2265396_2266665_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|CP029664.1_2266664_2267243_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|CP029664.1_2267755_2268163_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|CP029664.1_2268305_2268968_+	NA	NA|319aa|up_0|CP029664.1_2269085_2270042_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|463aa|down_0|CP029664.1_2271018_2272407_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_1|CP029664.1_2272487_2273243_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_2|CP029664.1_2273734_2274304_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_3|CP029664.1_2274319_2275843_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|86aa|down_4|CP029664.1_2275957_2276215_+	NA	NA|209aa|down_5|CP029664.1_2276287_2276914_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|CP029664.1_2277168_2277552_+	NA	NA|194aa|down_7|CP029664.1_2277617_2278199_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|84aa|down_8|CP029664.1_2278624_2278876_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|88aa|down_9|CP029664.1_2279175_2279439_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCA_003203595.1_ASM320359v1	CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	11	2746853-2747026	2,10	PILER-CR,CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAG,TTACAATAATGTGCAAGTTGGCGG	40,24	2	18	2746906-2746922|2746906-2746922|2746906-2746922|2746976-2746991|2746976-2746991|2746976-2746991|2746976-2746991|2746976-2746991|2746976-2746991|2746976-2746991|2746976-2746991|2746976-2746991|2746976-2746991|2746976-2746991|2746976-2746991|2746976-2746991|2746976-2746991|2746976-2746991	CP029664.1_1856685-1856701|CP029664.1_1856740-1856756|CP029664.1_2390572-2390556|CP029664.1_31636-31651|CP029664.1_657064-657079|CP029664.1_657122-657137|CP029664.1_1228305-1228320|CP029664.1_1314733-1314748|CP029664.1_1319145-1319130|CP029664.1_1527245-1527230|CP029664.1_1627858-1627873|CP029664.1_1807721-1807736|CP029664.1_2308796-2308781|CP029664.1_218237-218252|CP029664.1_824503-824488|CP029664.1_1003072-1003087|CP029664.1_1273077-1273092|CP029664.1_1531213-1531198	NA:NA	2,1	2	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|40aa|up_1|CP029664.1_2743872_2743992_+,NA	NA|205aa|up_9|CP029664.1_2737530_2738145_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|CP029664.1_2738137_2739388_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|CP029664.1_2739403_2740417_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|CP029664.1_2740385_2740964_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|CP029664.1_2740960_2741539_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|CP029664.1_2741531_2742236_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|CP029664.1_2742232_2742991_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|CP029664.1_2742987_2743620_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|40aa|up_1|CP029664.1_2743872_2743992_+	NA	NA|682aa|up_0|CP029664.1_2744709_2746755_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|CP029664.1_2747201_2748254_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|CP029664.1_2748240_2749113_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|CP029664.1_2749109_2749415_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|371aa|down_3|CP029664.1_2749378_2750491_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|CP029664.1_2750780_2751341_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|CP029664.1_2752188_2752851_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|CP029664.1_2752867_2753560_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|CP029664.1_2753556_2754324_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|CP029664.1_2754558_2755059_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|CP029664.1_2755061_2755538_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
