assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003203635.1_ASM320363v1	CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	1	425064-425165	1	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,RT,WYL	NA|128aa|up_6|CP029663.1_417657_418041_-,NA|64aa|up_4|CP029663.1_419009_419201_-,NA|221aa|down_1|CP029663.1_426255_426918_-,NA|179aa|down_7|CP029663.1_433009_433546_-,NA|76aa|down_9|CP029663.1_435040_435268_-	NA|88aa|up_9|CP029663.1_415770_416034_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|84aa|up_8|CP029663.1_416333_416585_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|194aa|up_7|CP029663.1_417010_417592_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|CP029663.1_417657_418041_-	NA	NA|209aa|up_5|CP029663.1_418310_418937_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|64aa|up_4|CP029663.1_419009_419201_-	NA	NA|508aa|up_3|CP029663.1_419380_420904_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_2|CP029663.1_420919_421489_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_1|CP029663.1_421980_422736_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|441aa|up_0|CP029663.1_422815_424138_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|319aa|down_0|CP029663.1_425181_426138_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|CP029663.1_426255_426918_-	NA	NA|136aa|down_2|CP029663.1_427060_427468_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|CP029663.1_427980_428559_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|CP029663.1_428558_429827_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|CP029663.1_429864_431331_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|CP029663.1_431355_432897_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|CP029663.1_433009_433546_-	NA	NA|235aa|down_8|CP029663.1_433937_434642_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|76aa|down_9|CP029663.1_435040_435268_-	NA
GCA_003203635.1_ASM320363v1	CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	2	661559-661649	2	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,RT,WYL	Orphan	CAACTGCATAAAAGCCTCTAATCACTAAAG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,RT,WYL	NA,NA|169aa|down_4|CP029663.1_665362_665869_+,NA|239aa|down_5|CP029663.1_666030_666747_+	NA|187aa|up_9|CP029663.1_651210_651771_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|313aa|up_8|CP029663.1_652218_653157_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_7|CP029663.1_653602_654139_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_6|CP029663.1_654306_654783_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_5|CP029663.1_654822_656118_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|169aa|up_4|CP029663.1_656160_656667_+	pfam08741, YwhD, YwhD family	NA|337aa|up_3|CP029663.1_657165_658176_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|139aa|up_2|CP029663.1_658451_658868_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|CP029663.1_658864_660526_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|CP029663.1_660795_661431_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|CP029663.1_661682_662570_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|329aa|down_1|CP029663.1_662682_663669_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|CP029663.1_663723_664443_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|CP029663.1_664426_665227_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|CP029663.1_665362_665869_+	NA	NA|239aa|down_5|CP029663.1_666030_666747_+	NA	NA|263aa|down_6|CP029663.1_666915_667704_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|CP029663.1_667955_668330_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|298aa|down_8|CP029663.1_669277_670171_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|CP029663.1_670401_670626_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCA_003203635.1_ASM320363v1	CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	3	821203-821281	3	CRISPRCasFinder	no	cas3	cas3,DinG,DEDDh,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	0	0	NA	NA	NA	1	1	Unclear	cas3,DinG,DEDDh,csa3,RT,WYL	NA,NA	cas3|361aa|up_9|CP029663.1_806710_807793_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_8|CP029663.1_807785_808460_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_7|CP029663.1_808520_809093_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_6|CP029663.1_809506_812038_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|331aa|up_5|CP029663.1_812470_813463_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|269aa|up_4|CP029663.1_813904_814711_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|CP029663.1_814884_815535_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|CP029663.1_815531_815768_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|CP029663.1_816036_818022_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|CP029663.1_818029_820876_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|CP029663.1_821539_822472_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|CP029663.1_822477_823317_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|120aa|down_2|CP029663.1_823450_823810_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|CP029663.1_823817_825257_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|CP029663.1_825323_826259_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|CP029663.1_827144_828056_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|CP029663.1_828052_829048_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|CP029663.1_829158_830103_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|CP029663.1_830666_831254_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|CP029663.1_831496_832399_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCA_003203635.1_ASM320363v1	CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	4	826658-826927	1	CRT	no	cas3	cas3,DinG,DEDDh,csa3,RT,WYL	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	32	826694-826715|826694-826715|826694-826715|826694-826715|826694-826715|826694-826715|826694-826715|826694-826715|826694-826715|826694-826715|826752-826774|826752-826774|826752-826774|826752-826774|826752-826774|826752-826774|826811-826832|826811-826832|826811-826832|826811-826832|826811-826832|826811-826832|826811-826832|826811-826832|826811-826832|826811-826832|826869-826891|826869-826891|826869-826891|826869-826891|826869-826891|826869-826891	CP029663.1_186988-186967|CP029663.1_310052-310031|CP029663.1_653325-653304|CP029663.1_870012-870033|CP029663.1_1231510-1231531|CP029663.1_1429106-1429085|CP029663.1_1519151-1519172|CP029663.1_2037253-2037274|CP029663.1_1211803-1211782|CP029663.1_1923783-1923762|CP029663.1_1246066-1246044|CP029663.1_1519034-1519056|CP029663.1_2037311-2037333|CP029663.1_2376902-2376924|CP029663.1_1429223-1429201|CP029663.1_2138217-2138239|CP029663.1_186988-186967|CP029663.1_310052-310031|CP029663.1_653325-653304|CP029663.1_870012-870033|CP029663.1_1231510-1231531|CP029663.1_1429106-1429085|CP029663.1_1519151-1519172|CP029663.1_2037253-2037274|CP029663.1_1211803-1211782|CP029663.1_1923783-1923762|CP029663.1_1246066-1246044|CP029663.1_1519034-1519056|CP029663.1_2037311-2037333|CP029663.1_2376902-2376924|CP029663.1_1429223-1429201|CP029663.1_2138217-2138239	NA	4	4	Unclear	cas3,DinG,DEDDh,csa3,RT,WYL	NA,NA	NA|269aa|up_9|CP029663.1_813904_814711_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|CP029663.1_814884_815535_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|CP029663.1_815531_815768_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|CP029663.1_816036_818022_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|CP029663.1_818029_820876_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|CP029663.1_821539_822472_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|CP029663.1_822477_823317_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|120aa|up_2|CP029663.1_823450_823810_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|CP029663.1_823817_825257_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|CP029663.1_825323_826259_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|CP029663.1_827144_828056_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|CP029663.1_828052_829048_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|CP029663.1_829158_830103_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|CP029663.1_830666_831254_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|CP029663.1_831496_832399_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|CP029663.1_833101_833731_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|CP029663.1_834543_835557_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|CP029663.1_835609_836620_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|CP029663.1_836758_837949_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|CP029663.1_838070_838832_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCA_003203635.1_ASM320363v1	CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	5	869939-870020	4	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	869963-869996	CP029663.1_1519043-1519076	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,RT,WYL	NA|38aa|up_1|CP029663.1_868841_868955_+,NA	NA|206aa|up_9|CP029663.1_863695_864313_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|CP029663.1_864467_864962_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|CP029663.1_865360_865783_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|CP029663.1_865930_866647_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|CP029663.1_866729_867269_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|CP029663.1_867419_867740_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|CP029663.1_867883_868240_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|CP029663.1_868397_868778_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|CP029663.1_868841_868955_+	NA	NA|293aa|up_0|CP029663.1_868956_869835_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|CP029663.1_870631_871018_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|CP029663.1_871010_871307_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|CP029663.1_871556_872582_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|218aa|down_3|CP029663.1_872616_873270_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|CP029663.1_873287_874109_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|CP029663.1_874462_874657_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|CP029663.1_874890_875742_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|CP029663.1_876069_876831_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|CP029663.1_876928_878236_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|CP029663.1_878350_879592_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCA_003203635.1_ASM320363v1	CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	6	1211618-1211698	5	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,RT,WYL	Orphan	AATTTCAACAGGCAATGGAAGTTGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,RT,WYL	NA|49aa|up_3|CP029663.1_1207484_1207631_+,NA	NA|421aa|up_9|CP029663.1_1200942_1202205_+	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|589aa|up_8|CP029663.1_1202220_1203987_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|258aa|up_7|CP029663.1_1204447_1205221_+	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|425aa|up_6|CP029663.1_1205381_1206656_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|141aa|up_5|CP029663.1_1206740_1207163_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|61aa|up_4|CP029663.1_1207262_1207445_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|49aa|up_3|CP029663.1_1207484_1207631_+	NA	NA|338aa|up_2|CP029663.1_1207867_1208881_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|381aa|up_1|CP029663.1_1209192_1210335_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|373aa|up_0|CP029663.1_1210335_1211454_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|223aa|down_0|CP029663.1_1212089_1212758_+	sd00006, TPR, Tetratricopeptide repeat	NA|826aa|down_1|CP029663.1_1212759_1215237_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|877aa|down_2|CP029663.1_1215579_1218210_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|87aa|down_3|CP029663.1_1218272_1218533_+	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|143aa|down_4|CP029663.1_1218536_1218965_+	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|103aa|down_5|CP029663.1_1218979_1219288_+	PRK13678, PRK13678, hypothetical protein; Provisional	NA|213aa|down_6|CP029663.1_1219572_1220211_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|308aa|down_7|CP029663.1_1220213_1221137_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|423aa|down_8|CP029663.1_1221148_1222417_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_9|CP029663.1_1222416_1223040_+	PRK05480, PRK05480, uridine/cytidine kinase; Provisional
GCA_003203635.1_ASM320363v1	CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	7	2138136-2138217	6	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,RT,WYL	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	4	2138160-2138193|2138160-2138193|2138160-2138193|2138160-2138193	CP029663.1_821202-821235|CP029663.1_1730845-1730878|CP029663.1_1119523-1119556|CP029663.1_1514702-1514669	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,RT,WYL	NA|49aa|up_8|CP029663.1_2130442_2130589_+,NA|61aa|up_6|CP029663.1_2130841_2131024_+,NA	NA|285aa|up_9|CP029663.1_2129514_2130369_+	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|49aa|up_8|CP029663.1_2130442_2130589_+	NA	NA|62aa|up_7|CP029663.1_2130585_2130771_+	pfam00815, Histidinol_dh, Histidinol dehydrogenase	NA|61aa|up_6|CP029663.1_2130841_2131024_+	NA	NA|238aa|up_5|CP029663.1_2131102_2131816_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|346aa|up_4|CP029663.1_2132006_2133044_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|275aa|up_3|CP029663.1_2133100_2133925_+	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|339aa|up_2|CP029663.1_2134162_2135179_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|CP029663.1_2135200_2136256_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|CP029663.1_2136691_2137915_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|CP029663.1_2138358_2139666_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|CP029663.1_2140205_2141822_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|CP029663.1_2141897_2142182_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|CP029663.1_2142356_2143100_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_4|CP029663.1_2143124_2144384_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|CP029663.1_2144580_2145207_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|CP029663.1_2145567_2146353_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|CP029663.1_2146952_2147087_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|CP029663.1_2147322_2147886_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|CP029663.1_2147888_2148032_+	smart00794, AgrD, Staphylococcal AgrD protein
GCA_003203635.1_ASM320363v1	CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	8	2267380-2267460	7	CRISPRCasFinder	no	csa3	cas3,DinG,DEDDh,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,RT,WYL	NA|77aa|up_5|CP029663.1_2262254_2262485_-,NA|364aa|up_0|CP029663.1_2266271_2267363_+,NA|53aa|down_1|CP029663.1_2268579_2268738_+	NA|237aa|up_9|CP029663.1_2257865_2258576_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP029663.1_2258696_2259140_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP029663.1_2259339_2259753_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP029663.1_2260209_2261583_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP029663.1_2262254_2262485_-	NA	NA|313aa|up_4|CP029663.1_2262515_2263454_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP029663.1_2263889_2264555_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP029663.1_2264706_2265027_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|CP029663.1_2265028_2266006_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP029663.1_2266271_2267363_+	NA	NA|57aa|down_0|CP029663.1_2268416_2268587_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|down_1|CP029663.1_2268579_2268738_+	NA	NA|286aa|down_2|CP029663.1_2269395_2270253_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|CP029663.1_2270320_2271103_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|CP029663.1_2271334_2273140_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|CP029663.1_2273820_2275359_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|CP029663.1_2275393_2277526_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|CP029663.1_2277537_2277972_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|CP029663.1_2277971_2279078_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|CP029663.1_2279396_2286842_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCA_003203635.1_ASM320363v1	CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	10	2387731-2387811	9	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	16	2387756-2387786|2387756-2387786|2387756-2387786|2387756-2387786|2387756-2387786|2387756-2387786|2387756-2387786|2387756-2387786|2387756-2387786|2387756-2387786|2387756-2387786|2387756-2387786|2387756-2387786|2387756-2387786|2387756-2387786|2387756-2387786	CP029663.1_833946-833976|CP029663.1_834002-834032|CP029663.1_88324-88354|CP029663.1_386359-386329|CP029663.1_653389-653359|CP029663.1_834058-834088|CP029663.1_870275-870305|CP029663.1_1231447-1231477|CP029663.1_1429054-1429024|CP029663.1_1429170-1429140|CP029663.1_1519087-1519117|CP029663.1_1725250-1725280|CP029663.1_1827804-1827774|CP029663.1_2035905-2035935|CP029663.1_2376955-2376985|CP029663.1_2552538-2552568	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,RT,WYL	NA|44aa|up_9|CP029663.1_2376685_2376817_-,NA|55aa|up_7|CP029663.1_2378264_2378429_+,NA|106aa|up_6|CP029663.1_2378673_2378991_+,NA	NA|44aa|up_9|CP029663.1_2376685_2376817_-	NA	NA|303aa|up_8|CP029663.1_2377223_2378132_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_7|CP029663.1_2378264_2378429_+	NA	NA|106aa|up_6|CP029663.1_2378673_2378991_+	NA	NA|1056aa|up_5|CP029663.1_2379174_2382342_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_4|CP029663.1_2382458_2383724_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|255aa|up_3|CP029663.1_2384355_2385120_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_2|CP029663.1_2385281_2385722_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|374aa|up_1|CP029663.1_2385804_2386926_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_0|CP029663.1_2387027_2387378_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|341aa|down_0|CP029663.1_2387954_2388977_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|CP029663.1_2388996_2389596_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|CP029663.1_2389602_2389836_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|CP029663.1_2389841_2390288_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|CP029663.1_2390301_2390787_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|CP029663.1_2390783_2392043_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|CP029663.1_2392105_2392600_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|CP029663.1_2392601_2393108_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|CP029663.1_2393138_2394143_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|CP029663.1_2394312_2394918_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
