The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029773	Stenotrophomonas maltophilia strain SJTL3 chromosome, complete genome	4891004	560697	572786	4891004		Enterobacteria_phage(37.5%)	9	NA	NA
AWT13254.1|560697_561489_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	34.5	4.0e-34
AWT13255.1|563014_563731_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AWT16898.1|563848_564904_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	45.3	1.0e-77
AWT13256.1|564918_565806_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	57.8	1.1e-96
AWT13257.1|565802_566360_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	51.1	1.2e-45
AWT13258.1|566356_567250_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	37.8	1.6e-28
AWT13259.1|567302_568706_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	28.9	3.6e-46
AWT13260.1|568718_570065_-	phosphomannomutase	NA	A0A127AWJ1	Bacillus_phage	27.0	3.5e-30
AWT13261.1|570161_572786_-	helicase	NA	A8C6A2	Antheraea_pernyi_nuclear_polyhedrosis_virus	31.1	3.2e-48
>prophage 2
CP029773	Stenotrophomonas maltophilia strain SJTL3 chromosome, complete genome	4891004	923337	966528	4891004	transposase,integrase,protease,portal	Agrobacterium_phage(10.0%)	30	939583:939596	967151:967164
AWT13558.1|923337_923964_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.4	7.7e-57
AWT13559.1|924090_925380_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.0	2.9e-135
AWT13560.1|925522_927973_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.1e-220
AWT13561.1|928190_928463_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	61.8	7.7e-22
AWT13562.1|929352_931308_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AWT13563.1|931519_932719_-	lytic transglycosylase	NA	NA	NA	NA	NA
AWT13564.1|932715_933480_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AWT13565.1|933491_934136_+	hypothetical protein	NA	NA	NA	NA	NA
AWT13566.1|934148_934601_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	53.4	1.0e-42
AWT13567.1|934605_935337_+	DNA polymerase III subunit epsilon	NA	A2I2Z6	Vibrio_virus	30.6	3.4e-08
AWT13568.1|935406_936111_-	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
AWT13569.1|936644_937049_+	hypothetical protein	NA	A0A1C9C5K8	Heterosigma_akashiwo_virus	35.3	7.7e-18
AWT13570.1|937097_938144_-	lipopolysaccharide heptosyltransferase family protein	NA	NA	NA	NA	NA
AWT13571.1|938164_938914_+	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA	NA
AWT13572.1|938913_939681_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
939583:939596	attL	GCGCTGGCCGCGCG	NA	NA	NA	NA
AWT13573.1|939677_940067_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AWT13574.1|940553_940871_+	quaternary ammonium compound-resistance protein SugE	NA	NA	NA	NA	NA
AWT13575.1|941227_952132_+	transporter	NA	NA	NA	NA	NA
AWT13576.1|952188_952632_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AWT16919.1|952795_953170_+	DUF3592 domain-containing protein	NA	NA	NA	NA	NA
AWT13577.1|953229_954336_-	hypothetical protein	NA	NA	NA	NA	NA
AWT13578.1|954982_955423_+	hypothetical protein	NA	NA	NA	NA	NA
AWT13579.1|955943_956549_+	hypothetical protein	NA	NA	NA	NA	NA
AWT13580.1|956830_957019_-	hypothetical protein	NA	NA	NA	NA	NA
AWT13581.1|957983_958847_+|protease	serine protease	protease	A0A2H4JE36	uncultured_Caudovirales_phage	33.2	3.0e-35
AWT13582.1|959340_959634_+|transposase	transposase	transposase	NA	NA	NA	NA
AWT16920.1|961471_962473_+|portal	phage portal protein	portal	V9IQW4	Stenotrophomonas_phage	76.8	3.6e-141
AWT16921.1|962599_962860_-	hypothetical protein	NA	NA	NA	NA	NA
AWT16922.1|962940_963384_-	hypothetical protein	NA	NA	NA	NA	NA
AWT13583.1|965235_966528_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	44.1	3.9e-87
967151:967164	attR	GCGCTGGCCGCGCG	NA	NA	NA	NA
>prophage 3
CP029773	Stenotrophomonas maltophilia strain SJTL3 chromosome, complete genome	4891004	999326	1017378	4891004	integrase,plate,tail	Escherichia_phage(35.71%)	22	1003210:1003225	1018859:1018874
AWT13623.1|999326_1000400_-|tail	phage tail protein	tail	D5LGY1	Escherichia_phage	50.7	1.5e-92
AWT13624.1|1000390_1000606_-|tail	phage tail protein	tail	NA	NA	NA	NA
AWT13625.1|1000589_1001057_-|tail	phage tail protein	tail	A4PE53	Ralstonia_virus	29.6	1.7e-08
AWT13626.1|1001059_1003507_-|tail	phage tail tape measure protein	tail	A0A1W6JT50	Escherichia_phage	23.3	2.0e-28
1003210:1003225	attL	GTGTGCCGCGCGCTGC	NA	NA	NA	NA
AWT13627.1|1003627_1003918_-|tail	phage tail assembly protein	tail	A0A193GYZ8	Enterobacter_phage	58.5	1.9e-18
AWT13628.1|1003998_1004502_-|tail	phage major tail tube protein	tail	A0A193GYM4	Enterobacter_phage	51.2	1.8e-40
AWT13629.1|1004504_1005704_-|tail	phage tail protein	tail	D5LGY7	Escherichia_phage	53.7	7.4e-125
AWT13630.1|1005811_1006396_-	hypothetical protein	NA	NA	NA	NA	NA
AWT13631.1|1006400_1007900_-	hypothetical protein	NA	V9IQX0	Stenotrophomonas_phage	57.3	2.0e-71
AWT13632.1|1007907_1008687_-|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	50.0	1.9e-44
AWT13633.1|1008679_1009576_-|plate	baseplate assembly protein	plate	V5YTH6	Pseudomonas_phage	56.1	1.1e-80
AWT13634.1|1009578_1009917_-|plate	phage baseplate protein	plate	A0A193GYY8	Enterobacter_phage	61.3	1.0e-31
AWT13635.1|1009969_1010560_-|plate	phage baseplate assembly protein V	plate	A0A193GYL5	Enterobacter_phage	37.7	5.6e-25
AWT13636.1|1010556_1011111_-	hypothetical protein	NA	NA	NA	NA	NA
AWT13637.1|1011464_1011842_-	hypothetical protein	NA	NA	NA	NA	NA
AWT13638.1|1011838_1012324_-	glycoside hydrolase	NA	D5LH07	Escherichia_phage	55.0	2.7e-41
AWT13639.1|1012320_1012671_-	hypothetical protein	NA	NA	NA	NA	NA
AWT13640.1|1012667_1013117_-	hypothetical protein	NA	NA	NA	NA	NA
AWT13641.1|1013453_1013837_-	hypothetical protein	NA	NA	NA	NA	NA
AWT13642.1|1013991_1014621_-	hypothetical protein	NA	A0A1V0DYI4	Shewanella_phage	43.7	1.4e-21
AWT13643.1|1014661_1014889_-	hypothetical protein	NA	NA	NA	NA	NA
AWT13644.1|1015041_1017378_-|integrase	integrase	integrase	A0A088FVF8	Escherichia_phage	43.3	1.4e-135
1018859:1018874	attR	GTGTGCCGCGCGCTGC	NA	NA	NA	NA
>prophage 4
CP029773	Stenotrophomonas maltophilia strain SJTL3 chromosome, complete genome	4891004	2339952	2351873	4891004	integrase	Stenotrophomonas_phage(72.73%)	21	NA	NA
AWT14787.1|2339952_2340204_+	hypothetical protein	NA	A0A1C3S6W5	Escherichia_phage	43.8	2.8e-10
AWT14788.1|2340348_2340861_-	hypothetical protein	NA	NA	NA	NA	NA
AWT14789.1|2340857_2341700_-|integrase	integrase	integrase	NA	NA	NA	NA
AWT14790.1|2342091_2342376_+	hypothetical protein	NA	NA	NA	NA	NA
AWT14791.1|2342372_2343587_+	hypothetical protein	NA	A0A077JGB2	Xanthomonas_phage	32.4	3.1e-38
AWT14792.1|2343671_2343878_+	hypothetical protein	NA	NA	NA	NA	NA
AWT14793.1|2343983_2344307_-	hypothetical protein	NA	S0F2C0	Stenotrophomonas_phage	95.3	1.7e-52
AWT14794.1|2344299_2344761_-	hypothetical protein	NA	S0F2J2	Stenotrophomonas_phage	53.8	6.5e-29
AWT14795.1|2344892_2345156_+	hypothetical protein	NA	S0F3S0	Stenotrophomonas_phage	65.1	1.1e-20
AWT14796.1|2345145_2345340_+	hypothetical protein	NA	NA	NA	NA	NA
AWT14797.1|2345329_2346385_+	phage replication protein	NA	S0F3F7	Stenotrophomonas_phage	98.9	2.2e-205
AWT14798.1|2346366_2346636_+	hypothetical protein	NA	S0F2M9	Stenotrophomonas_phage	88.5	2.6e-38
AWT14799.1|2346639_2346852_+	hypothetical protein	NA	NA	NA	NA	NA
AWT14800.1|2346873_2347113_+	hypothetical protein	NA	NA	NA	NA	NA
AWT14801.1|2347872_2348124_-	hypothetical protein	NA	NA	NA	NA	NA
AWT14802.1|2348299_2348743_+	hypothetical protein	NA	NA	NA	NA	NA
AWT14803.1|2348742_2349066_+	hypothetical protein	NA	NA	NA	NA	NA
AWT14804.1|2349062_2349878_+	hypothetical protein	NA	B1NI81	Stenotrophomonas_phage	34.9	4.4e-28
AWT14805.1|2350257_2350893_+	conjugal transfer protein	NA	S0F2N7	Stenotrophomonas_phage	74.9	4.5e-73
AWT14806.1|2351051_2351483_+	hypothetical protein	NA	A0A077JCA3	Xanthomonas_phage	37.5	7.4e-11
AWT14807.1|2351534_2351873_-	hypothetical protein	NA	S0F2N2	Stenotrophomonas_phage	93.8	8.0e-53
