assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003258605.2_ASM325860v2	CP031264	Streptacidiphilus sp. DSM 106435 chromosome, complete genome	1	438772-438851	1	CRISPRCasFinder	no		WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	Orphan	GGGCCTCCCAGCCCATCGGGAGG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	NA|217aa|up_7|CP031264.1_428871_429522_-,NA|107aa|up_3|CP031264.1_433253_433574_-,NA	NA|433aa|up_9|CP031264.1_424898_426197_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|835aa|up_8|CP031264.1_426309_428814_+	pfam12029, DUF3516, Domain of unknown function (DUF3516)	NA|217aa|up_7|CP031264.1_428871_429522_-	NA	NA|401aa|up_6|CP031264.1_429871_431074_+	PRK06256, PRK06256, biotin synthase; Validated	NA|435aa|up_5|CP031264.1_431070_432375_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|252aa|up_4|CP031264.1_432393_433149_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|107aa|up_3|CP031264.1_433253_433574_-	NA	NA|145aa|up_2|CP031264.1_433665_434100_-	PRK03624, PRK03624, putative acetyltransferase; Provisional	NA|786aa|up_1|CP031264.1_434528_436886_-	cd09597, M4_TLP, Peptidase M4 family including thermolysin, protealysin, aureolysin, and neutral protease	NA|428aa|up_0|CP031264.1_437296_438580_+	pfam18135, Type_ISP_C, Type ISP C-terminal specificity domain	NA|222aa|down_0|CP031264.1_438963_439629_+	COG3897, COG3897, Predicted methyltransferase [General function prediction only]	NA|366aa|down_1|CP031264.1_439514_440612_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|485aa|down_2|CP031264.1_440689_442144_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|288aa|down_3|CP031264.1_442171_443035_+	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|387aa|down_4|CP031264.1_443246_444407_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|258aa|down_5|CP031264.1_444471_445245_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|133aa|down_6|CP031264.1_445458_445857_+	pfam07179, SseB, SseB protein N-terminal domain	NA|280aa|down_7|CP031264.1_445946_446786_+	cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily	NA|161aa|down_8|CP031264.1_446969_447452_-	cd07824, SRPBCC_6, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|144aa|down_9|CP031264.1_447451_447883_-	cd07251, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family
GCA_003258605.2_ASM325860v2	CP031264	Streptacidiphilus sp. DSM 106435 chromosome, complete genome	2	913287-913410	2	CRISPRCasFinder	no	csa3	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	Type I-A	CCCCGTCCGCATCCCCCCGCCGACTGGGACCCCTGG	36	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	NA|114aa|up_9|CP031264.1_904236_904578_-,NA|158aa|up_5|CP031264.1_908597_909071_-,NA|84aa|down_4|CP031264.1_923091_923343_-,NA|74aa|down_9|CP031264.1_927766_927988_-	NA|114aa|up_9|CP031264.1_904236_904578_-	NA	NA|338aa|up_8|CP031264.1_904994_906008_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|653aa|up_7|CP031264.1_906299_908258_+	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|63aa|up_6|CP031264.1_908392_908581_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|158aa|up_5|CP031264.1_908597_909071_-	NA	NA|386aa|up_4|CP031264.1_909115_910273_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|164aa|up_3|CP031264.1_910323_910815_-	cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|184aa|up_2|CP031264.1_910924_911476_+	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional	NA|248aa|up_1|CP031264.1_911525_912269_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|187aa|up_0|CP031264.1_912662_913223_-	TIGR00927, retinal_rod, K+-dependent Na+/Ca+ exchanger	NA|1600aa|down_0|CP031264.1_913731_918531_-	cd07539, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporters	NA|122aa|down_1|CP031264.1_918637_919003_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|594aa|down_2|CP031264.1_919168_920950_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|615aa|down_3|CP031264.1_920946_922791_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|84aa|down_4|CP031264.1_923091_923343_-	NA	NA|222aa|down_5|CP031264.1_923503_924169_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|225aa|down_6|CP031264.1_924617_925292_-	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain	NA|344aa|down_7|CP031264.1_925537_926569_+	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|406aa|down_8|CP031264.1_926571_927789_+	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2	NA|74aa|down_9|CP031264.1_927766_927988_-	NA
GCA_003258605.2_ASM325860v2	CP031264	Streptacidiphilus sp. DSM 106435 chromosome, complete genome	5	1843449-1843704	2	CRT	no		WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	Orphan	GCCTCGGTGGTCGGGGAGGGCGGCAGCGGGA	31	0	0	NA	NA	NA	3	3	Orphan	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	NA|93aa|up_3|CP031264.1_1837627_1837906_+,NA|208aa|up_2|CP031264.1_1837905_1838529_+,NA|66aa|down_0|CP031264.1_1845339_1845537_-,NA|465aa|down_1|CP031264.1_1845458_1846853_+	NA|343aa|up_9|CP031264.1_1831832_1832861_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|346aa|up_8|CP031264.1_1833109_1834147_+	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like	NA|327aa|up_7|CP031264.1_1834279_1835260_+	pfam09362, DUF1996, Domain of unknown function (DUF1996)	NA|184aa|up_6|CP031264.1_1835412_1835964_+	PRK09645, PRK09645, ECF RNA polymerase sigma factor SigL	NA|253aa|up_5|CP031264.1_1835960_1836719_+	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]	NA|226aa|up_4|CP031264.1_1836827_1837505_-	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown]	NA|93aa|up_3|CP031264.1_1837627_1837906_+	NA	NA|208aa|up_2|CP031264.1_1837905_1838529_+	NA	NA|1469aa|up_1|CP031264.1_1838604_1843011_-	TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC, C-terminal domain	NA|98aa|up_0|CP031264.1_1843076_1843370_-	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|66aa|down_0|CP031264.1_1845339_1845537_-	NA	NA|465aa|down_1|CP031264.1_1845458_1846853_+	NA	NA|449aa|down_2|CP031264.1_1846899_1848246_-	TIGR02155, Phenylacetate-coenzyme_A_ligase, phenylacetate-CoA ligase	NA|142aa|down_3|CP031264.1_1848242_1848668_-	TIGR02286, Acyl-coenzyme_A_thioesterase_PaaI, phenylacetic acid degradation protein PaaD	NA|582aa|down_4|CP031264.1_1848773_1850519_+	cd07127, ALDH_PAD-PaaZ, Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like	NA|408aa|down_5|CP031264.1_1850508_1851732_+	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|250aa|down_6|CP031264.1_1851737_1852487_+	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|309aa|down_7|CP031264.1_1852483_1853410_+	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]	NA|343aa|down_8|CP031264.1_1853498_1854527_+	PRK13778, paaA, phenylacetate-CoA oxygenase subunit PaaA; Provisional	NA|101aa|down_9|CP031264.1_1854523_1854826_+	PRK13781, paaB, phenylacetate-CoA oxygenase subunit PaaB; Provisional
GCA_003258605.2_ASM325860v2	CP031264	Streptacidiphilus sp. DSM 106435 chromosome, complete genome	6	1865620-1865741	4	CRISPRCasFinder	no		WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	Orphan	AGCGGGGGGCTGCGCCGGTCACTGGGCGTCGCCTCC	36	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	NA,NA	NA|191aa|up_9|CP031264.1_1855695_1856268_+	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit	NA|373aa|up_8|CP031264.1_1856264_1857383_+	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|226aa|up_7|CP031264.1_1857598_1858276_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|432aa|up_6|CP031264.1_1858466_1859762_+	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|155aa|up_5|CP031264.1_1859901_1860366_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|138aa|up_4|CP031264.1_1860530_1860944_-	cd07242, VOC_BsYqjT, vicinal oxygen chelate (VOC) family protein similar to Bacillus subtilis YqjT	NA|151aa|up_3|CP031264.1_1861389_1861842_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|233aa|up_2|CP031264.1_1861924_1862623_+	PRK08264, PRK08264, SDR family oxidoreductase	NA|438aa|up_1|CP031264.1_1863135_1864449_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|74aa|up_0|CP031264.1_1864506_1864728_+	smart00834, CxxC_CXXC_SSSS, Putative regulatory protein	NA|393aa|down_0|CP031264.1_1868619_1869798_-	pfam15617, C-C_Bond_Lyase, C-C_Bond_Lyase of the TIM-Barrel fold	NA|297aa|down_1|CP031264.1_1870183_1871074_+	pfam02342, TerD, TerD domain	NA|241aa|down_2|CP031264.1_1871108_1871831_-	COG4110, COG4110, Uncharacterized protein involved in stress response [General function prediction only]	NA|359aa|down_3|CP031264.1_1872139_1873216_+	pfam10935, DUF2637, Protein of unknown function (DUF2637)	NA|330aa|down_4|CP031264.1_1873212_1874202_+	cd00978, chitosanase_GH46, chitosanase belonging to the glycosyl hydrolase 46 family	NA|399aa|down_5|CP031264.1_1874299_1875496_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|384aa|down_6|CP031264.1_1875554_1876706_-	PRK14013, PRK14013, hypothetical protein; Provisional	NA|192aa|down_7|CP031264.1_1876807_1877383_-	pfam02342, TerD, TerD domain	NA|192aa|down_8|CP031264.1_1877662_1878238_-	pfam02342, TerD, TerD domain	NA|153aa|down_9|CP031264.1_1878407_1878866_-	cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE
GCA_003258605.2_ASM325860v2	CP031264	Streptacidiphilus sp. DSM 106435 chromosome, complete genome	7	3273703-3274031	3,5	CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	Type I-E	CCATCCCCGCAGGCGCGGGGAGCACN,GGGGCCATCCCCGCAGGCGCGGGGAGCAC	26,29	0	0	NA	NA	I-E:I-E	5,4	5	TypeI-E	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	NA|406aa|up_6|CP031264.1_3265224_3266442_-,NA|88aa|up_5|CP031264.1_3267012_3267276_-,NA|78aa|up_3|CP031264.1_3269024_3269258_+,NA|245aa|up_0|CP031264.1_3272722_3273457_+,NA|94aa|down_7|CP031264.1_3285252_3285534_-	NA|265aa|up_9|CP031264.1_3261598_3262393_+	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain	NA|228aa|up_8|CP031264.1_3262322_3263006_-	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|710aa|up_7|CP031264.1_3263009_3265139_-	sd00006, TPR, Tetratricopeptide repeat	NA|406aa|up_6|CP031264.1_3265224_3266442_-	NA	NA|88aa|up_5|CP031264.1_3267012_3267276_-	NA	NA|513aa|up_4|CP031264.1_3267326_3268865_-	pfam05231, MASE1, MASE1	NA|78aa|up_3|CP031264.1_3269024_3269258_+	NA	NA|131aa|up_2|CP031264.1_3269257_3269650_+	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins	NA|922aa|up_1|CP031264.1_3269702_3272468_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|245aa|up_0|CP031264.1_3272722_3273457_+	NA	cas2|117aa|down_0|CP031264.1_3274546_3274897_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|318aa|down_1|CP031264.1_3274893_3275847_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|243aa|down_2|CP031264.1_3275843_3276572_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|241aa|down_3|CP031264.1_3276609_3277332_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|399aa|down_4|CP031264.1_3277328_3278525_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|237aa|down_5|CP031264.1_3278521_3279232_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|1544aa|down_6|CP031264.1_3279228_3283860_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	NA|94aa|down_7|CP031264.1_3285252_3285534_-	NA	NA|79aa|down_8|CP031264.1_3285773_3286010_-	pfam12587, DUF3761, Protein of unknown function (DUF3761)	NA|536aa|down_9|CP031264.1_3286231_3287839_+	pfam00171, Aldedh, Aldehyde dehydrogenase family
GCA_003258605.2_ASM325860v2	CP031264	Streptacidiphilus sp. DSM 106435 chromosome, complete genome	8	3284156-3284916	6,4,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	Type I-E	GGGGCCATCCCCGCAGGCGCGGGGAGCAC,GGGGCCATCCCCGCAGGCGCGGGGAGCAC,GGGGCCATCCCCGCAGGCGCGGGGAGCAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,11	12	TypeI-E	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	NA|245aa|up_7|CP031264.1_3272722_3273457_+,NA|94aa|down_0|CP031264.1_3285252_3285534_-,NA|73aa|down_7|CP031264.1_3293826_3294045_+,NA|313aa|down_8|CP031264.1_3294108_3295047_+,NA|78aa|down_9|CP031264.1_3295278_3295512_+	NA|131aa|up_9|CP031264.1_3269257_3269650_+	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins	NA|922aa|up_8|CP031264.1_3269702_3272468_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|245aa|up_7|CP031264.1_3272722_3273457_+	NA	cas2|117aa|up_6|CP031264.1_3274546_3274897_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|318aa|up_5|CP031264.1_3274893_3275847_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|243aa|up_4|CP031264.1_3275843_3276572_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|241aa|up_3|CP031264.1_3276609_3277332_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|399aa|up_2|CP031264.1_3277328_3278525_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|237aa|up_1|CP031264.1_3278521_3279232_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|1544aa|up_0|CP031264.1_3279228_3283860_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	NA|94aa|down_0|CP031264.1_3285252_3285534_-	NA	NA|79aa|down_1|CP031264.1_3285773_3286010_-	pfam12587, DUF3761, Protein of unknown function (DUF3761)	NA|536aa|down_2|CP031264.1_3286231_3287839_+	pfam00171, Aldedh, Aldehyde dehydrogenase family	NA|188aa|down_3|CP031264.1_3287853_3288417_+	cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands	NA|340aa|down_4|CP031264.1_3288613_3289633_+	TIGR04027, Luciferase-like_monooxygenase, putative FMN-dependent luciferase-like monooxygenase, KPN_01858 family	NA|649aa|down_5|CP031264.1_3289706_3291653_-	cd14962, NHL_like_6, Uncharacterized NHL-repeat domain in bacterial proteins	NA|370aa|down_6|CP031264.1_3292037_3293147_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|73aa|down_7|CP031264.1_3293826_3294045_+	NA	NA|313aa|down_8|CP031264.1_3294108_3295047_+	NA	NA|78aa|down_9|CP031264.1_3295278_3295512_+	NA
GCA_003258605.2_ASM325860v2	CP031264	Streptacidiphilus sp. DSM 106435 chromosome, complete genome	9	3297214-3298462	7,5,2	CRISPRCasFinder,CRT,PILER-CR	no	cas7,cse2gr11,cas8e	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	Type I-E	GGGACCATCCCCGCAGGCGCGGGGAGCAC,GGGACCATCCCCGCAGGCGCGGGGAGCAC,GGACCATCCCCGCAGGCGCGGGGAGCAC	29,29,28	0	0	NA	NA	I-E:I-E:I-E	20,20,20	20	TypeI-E	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	NA|73aa|up_4|CP031264.1_3293826_3294045_+,NA|313aa|up_3|CP031264.1_3294108_3295047_+,NA|78aa|up_2|CP031264.1_3295278_3295512_+,NA|147aa|up_1|CP031264.1_3295613_3296054_+,NA|110aa|down_0|CP031264.1_3298562_3298892_-,NA|1163aa|down_3|CP031264.1_3304707_3308196_+	NA|536aa|up_9|CP031264.1_3286231_3287839_+	pfam00171, Aldedh, Aldehyde dehydrogenase family	NA|188aa|up_8|CP031264.1_3287853_3288417_+	cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands	NA|340aa|up_7|CP031264.1_3288613_3289633_+	TIGR04027, Luciferase-like_monooxygenase, putative FMN-dependent luciferase-like monooxygenase, KPN_01858 family	NA|649aa|up_6|CP031264.1_3289706_3291653_-	cd14962, NHL_like_6, Uncharacterized NHL-repeat domain in bacterial proteins	NA|370aa|up_5|CP031264.1_3292037_3293147_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|73aa|up_4|CP031264.1_3293826_3294045_+	NA	NA|313aa|up_3|CP031264.1_3294108_3295047_+	NA	NA|78aa|up_2|CP031264.1_3295278_3295512_+	NA	NA|147aa|up_1|CP031264.1_3295613_3296054_+	NA	NA|307aa|up_0|CP031264.1_3296032_3296953_+	pfam08007, Cupin_4, Cupin superfamily protein	NA|110aa|down_0|CP031264.1_3298562_3298892_-	NA	NA|284aa|down_1|CP031264.1_3299040_3299892_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|471aa|down_2|CP031264.1_3303074_3304487_-	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|1163aa|down_3|CP031264.1_3304707_3308196_+	NA	NA|452aa|down_4|CP031264.1_3308280_3309636_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|128aa|down_5|CP031264.1_3309923_3310307_-	cd08351, ChaP_like, ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha), and similar proteins	NA|205aa|down_6|CP031264.1_3310502_3311117_+	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|140aa|down_7|CP031264.1_3311164_3311584_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|181aa|down_8|CP031264.1_3311678_3312221_+	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily	NA|524aa|down_9|CP031264.1_3312250_3313822_+	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
GCA_003258605.2_ASM325860v2	CP031264	Streptacidiphilus sp. DSM 106435 chromosome, complete genome	10	3301114-3302609	6,8,3	CRT,CRISPRCasFinder,PILER-CR	no		WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	Orphan	GGGGTCATCCCCGCAGGCGCGGGGAGC,GGGGTCATCCCCGCAGGCGCGGGGAGCGG,GGGGTCATCCCCGCAGGCGCGGGGAGC	27,29,27	0	0	NA	NA	I-E:I-E:I-E	24,23,21	24	Orphan	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	NA|73aa|up_6|CP031264.1_3293826_3294045_+,NA|313aa|up_5|CP031264.1_3294108_3295047_+,NA|78aa|up_4|CP031264.1_3295278_3295512_+,NA|147aa|up_3|CP031264.1_3295613_3296054_+,NA|110aa|up_1|CP031264.1_3298562_3298892_-,NA|1163aa|down_1|CP031264.1_3304707_3308196_+	NA|340aa|up_9|CP031264.1_3288613_3289633_+	TIGR04027, Luciferase-like_monooxygenase, putative FMN-dependent luciferase-like monooxygenase, KPN_01858 family	NA|649aa|up_8|CP031264.1_3289706_3291653_-	cd14962, NHL_like_6, Uncharacterized NHL-repeat domain in bacterial proteins	NA|370aa|up_7|CP031264.1_3292037_3293147_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|73aa|up_6|CP031264.1_3293826_3294045_+	NA	NA|313aa|up_5|CP031264.1_3294108_3295047_+	NA	NA|78aa|up_4|CP031264.1_3295278_3295512_+	NA	NA|147aa|up_3|CP031264.1_3295613_3296054_+	NA	NA|307aa|up_2|CP031264.1_3296032_3296953_+	pfam08007, Cupin_4, Cupin superfamily protein	NA|110aa|up_1|CP031264.1_3298562_3298892_-	NA	NA|284aa|up_0|CP031264.1_3299040_3299892_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|471aa|down_0|CP031264.1_3303074_3304487_-	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|1163aa|down_1|CP031264.1_3304707_3308196_+	NA	NA|452aa|down_2|CP031264.1_3308280_3309636_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|128aa|down_3|CP031264.1_3309923_3310307_-	cd08351, ChaP_like, ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha), and similar proteins	NA|205aa|down_4|CP031264.1_3310502_3311117_+	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|140aa|down_5|CP031264.1_3311164_3311584_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|181aa|down_6|CP031264.1_3311678_3312221_+	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily	NA|524aa|down_7|CP031264.1_3312250_3313822_+	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|413aa|down_8|CP031264.1_3313842_3315081_+	PRK08163, PRK08163, 3-hydroxybenzoate 6-monooxygenase	NA|521aa|down_9|CP031264.1_3316882_3318445_+	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like
GCA_003258605.2_ASM325860v2	CP031264	Streptacidiphilus sp. DSM 106435 chromosome, complete genome	11	3612190-3612313	9	CRISPRCasFinder	no		WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	Orphan	GGCGGGTGTACGTCAACCTGTGCGCCCCCGGAAC	34	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	NA|252aa|up_2|CP031264.1_3609533_3610289_-,NA	NA|426aa|up_9|CP031264.1_3600876_3602154_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|311aa|up_8|CP031264.1_3602715_3603648_-	PRK11898, PRK11898, prephenate dehydratase; Provisional	NA|440aa|up_7|CP031264.1_3603756_3605076_-	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme	NA|692aa|up_6|CP031264.1_3605179_3607255_-	pfam04234, CopC, CopC domain	NA|171aa|up_5|CP031264.1_3607272_3607785_-	pfam04314, PCuAC, Copper chaperone PCu(A)C	NA|228aa|up_4|CP031264.1_3607781_3608465_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|261aa|up_3|CP031264.1_3608595_3609378_-	pfam07987, DUF1775, Domain of unkown function (DUF1775)	NA|252aa|up_2|CP031264.1_3609533_3610289_-	NA	NA|264aa|up_1|CP031264.1_3610557_3611349_+	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|191aa|up_0|CP031264.1_3611501_3612074_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|329aa|down_0|CP031264.1_3612460_3613447_-	cd05265, SDR_a1, atypical (a) SDRs, subgroup 1	NA|249aa|down_1|CP031264.1_3613488_3614235_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|357aa|down_2|CP031264.1_3614231_3615302_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|433aa|down_3|CP031264.1_3615487_3616786_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|213aa|down_4|CP031264.1_3616782_3617421_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|314aa|down_5|CP031264.1_3617407_3618349_-	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	NA|514aa|down_6|CP031264.1_3618602_3620144_-	cd01087, Prolidase, Prolidase	NA|696aa|down_7|CP031264.1_3620276_3622364_-	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|244aa|down_8|CP031264.1_3622545_3623277_+	pfam09250, Prim-Pol, Bifunctional DNA primase/polymerase, N-terminal	NA|331aa|down_9|CP031264.1_3623503_3624496_-	pfam02810, SEC-C, SEC-C motif
GCA_003258605.2_ASM325860v2	CP031264	Streptacidiphilus sp. DSM 106435 chromosome, complete genome	12	3865102-3865256	10	CRISPRCasFinder	no		WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	Orphan	GCCACCGCCCTGGCACCCGCTGACCCC	27	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	NA|123aa|up_8|CP031264.1_3853412_3853781_-,NA|105aa|up_4|CP031264.1_3856465_3856780_-,NA|809aa|up_2|CP031264.1_3859061_3861488_+,NA	NA|220aa|up_9|CP031264.1_3852742_3853402_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|123aa|up_8|CP031264.1_3853412_3853781_-	NA	NA|76aa|up_7|CP031264.1_3853917_3854145_-	pfam07311, Dodecin, Dodecin	NA|212aa|up_6|CP031264.1_3854344_3854980_+	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only]	NA|70aa|up_5|CP031264.1_3856223_3856433_-	PRK10547, PRK10547, chemotaxis protein CheA; Provisional	NA|105aa|up_4|CP031264.1_3856465_3856780_-	NA	NA|639aa|up_3|CP031264.1_3857148_3859065_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|809aa|up_2|CP031264.1_3859061_3861488_+	NA	NA|225aa|up_1|CP031264.1_3861634_3862309_+	PRK10847, PRK10847, DedA family protein	NA|466aa|up_0|CP031264.1_3862728_3864126_+	pfam06738, ThrE, Putative threonine/serine exporter	NA|186aa|down_0|CP031264.1_3865386_3865944_+	cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|103aa|down_1|CP031264.1_3866085_3866394_+	pfam01044, Vinculin, Vinculin family	NA|165aa|down_2|CP031264.1_3866479_3866974_-	pfam00719, Pyrophosphatase, Inorganic pyrophosphatase	NA|551aa|down_3|CP031264.1_3866954_3868607_+	TIGR00666, D-alanyl-D-alanine_carboxypeptidase_DacB, D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family	NA|385aa|down_4|CP031264.1_3868654_3869809_+	TIGR03883, DUF2342_F420, uncharacterized protein, coenzyme F420 biosynthesis associated	NA|399aa|down_5|CP031264.1_3870137_3871334_+	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|185aa|down_6|CP031264.1_3871348_3871903_+	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|676aa|down_7|CP031264.1_3872148_3874176_+	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|202aa|down_8|CP031264.1_3874266_3874872_+	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|615aa|down_9|CP031264.1_3875092_3876937_+	PRK02983, lysS, bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX
GCA_003258605.2_ASM325860v2	CP031264	Streptacidiphilus sp. DSM 106435 chromosome, complete genome	15	4392482-4392627	13	CRISPRCasFinder	no		WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	Orphan	GCGCGCTGCGCGCGGGGGTTCGGGGGTGGGGTGGGGTGGGCGCGGGGTCGGGC	53	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	NA|140aa|up_7|CP031264.1_4385433_4385853_-,NA|65aa|up_5|CP031264.1_4386953_4387148_-,NA|66aa|up_3|CP031264.1_4389637_4389835_-,NA|314aa|down_4|CP031264.1_4397299_4398241_-	NA|343aa|up_9|CP031264.1_4381045_4382074_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|791aa|up_8|CP031264.1_4382694_4385067_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|140aa|up_7|CP031264.1_4385433_4385853_-	NA	NA|323aa|up_6|CP031264.1_4385933_4386902_-	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase	NA|65aa|up_5|CP031264.1_4386953_4387148_-	NA	NA|704aa|up_4|CP031264.1_4387481_4389593_+	pfam00326, Peptidase_S9, Prolyl oligopeptidase family	NA|66aa|up_3|CP031264.1_4389637_4389835_-	NA	NA|319aa|up_2|CP031264.1_4390095_4391052_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|244aa|up_1|CP031264.1_4391048_4391780_+	pfam01061, ABC2_membrane, ABC-2 type transporter	NA|206aa|up_0|CP031264.1_4391863_4392481_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|282aa|down_0|CP031264.1_4392702_4393548_-	pfam13369, Transglut_core2, Transglutaminase-like superfamily	NA|338aa|down_1|CP031264.1_4393602_4394616_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|106aa|down_2|CP031264.1_4394728_4395046_+	COG1146, COG1146, Ferredoxin [Energy production and conversion]	NA|383aa|down_3|CP031264.1_4395066_4396215_+	PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed	NA|314aa|down_4|CP031264.1_4397299_4398241_-	NA	NA|361aa|down_5|CP031264.1_4398372_4399455_+	PRK13007, PRK13007, succinyl-diaminopimelate desuccinylase; Reviewed	NA|289aa|down_6|CP031264.1_4399495_4400362_+	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|305aa|down_7|CP031264.1_4400374_4401289_-	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase	NA|157aa|down_8|CP031264.1_4401385_4401856_+	TIGR03544, cell_division_initiation_protein_DivIVA, DivIVA domain	NA|196aa|down_9|CP031264.1_4401852_4402440_+	pfam03352, Adenine_glyco, Methyladenine glycosylase
GCA_003258605.2_ASM325860v2	CP031264	Streptacidiphilus sp. DSM 106435 chromosome, complete genome	16	4644198-4644347	14	CRISPRCasFinder	no		WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	Orphan	GGCGTGGCCGGGGGAGTGGGGGTCGGGGTGGCCCGGGTCGCCGACAAGGAGCG	53	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	NA,NA|107aa|down_0|CP031264.1_4644401_4644722_-,NA|131aa|down_5|CP031264.1_4650100_4650493_+,NA|108aa|down_7|CP031264.1_4652040_4652364_+	NA|271aa|up_9|CP031264.1_4635642_4636455_+	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated	NA|81aa|up_8|CP031264.1_4636536_4636779_+	PRK07874, PRK07874, ATP synthase F0 subunit C	NA|184aa|up_7|CP031264.1_4636819_4637371_+	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated	NA|272aa|up_6|CP031264.1_4637367_4638183_+	PRK13430, PRK13430, F0F1 ATP synthase subunit delta; Provisional	NA|525aa|up_5|CP031264.1_4638327_4639902_+	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|307aa|up_4|CP031264.1_4639929_4640850_+	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|482aa|up_3|CP031264.1_4640855_4642301_+	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|126aa|up_2|CP031264.1_4642502_4642880_+	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|168aa|up_1|CP031264.1_4643037_4643541_+	pfam10739, DUF2550, Protein of unknown function (DUF2550)	NA|191aa|up_0|CP031264.1_4643617_4644190_+	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase	NA|107aa|down_0|CP031264.1_4644401_4644722_-	NA	NA|286aa|down_1|CP031264.1_4644901_4645759_+	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]	NA|140aa|down_2|CP031264.1_4646019_4646439_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|813aa|down_3|CP031264.1_4646631_4649070_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|220aa|down_4|CP031264.1_4649066_4649726_-	PRK03298, PRK03298, endonuclease NucS	NA|131aa|down_5|CP031264.1_4650100_4650493_+	NA	NA|393aa|down_6|CP031264.1_4650545_4651724_-	pfam00296, Bac_luciferase, Luciferase-like monooxygenase	NA|108aa|down_7|CP031264.1_4652040_4652364_+	NA	NA|261aa|down_8|CP031264.1_4652402_4653185_-	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|325aa|down_9|CP031264.1_4653188_4654163_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter
GCA_003258605.2_ASM325860v2	CP031264	Streptacidiphilus sp. DSM 106435 chromosome, complete genome	17	5133514-5133846	4,15,7	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	Type I-E	CGGACCACCCCCGCCTGCGCGGGGAACAC,CGGACCACCCCCGCCTGCGCGGGGAACAC,CGGACCACCCCCGCCTGCGCGGGGAACAC	29,29,29	0	0	NA	NA	NA:NA:NA	5,5,5	5	TypeI-E	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	NA|142aa|up_7|CP031264.1_5125744_5126170_-,NA	NA|470aa|up_9|CP031264.1_5122900_5124310_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|463aa|up_8|CP031264.1_5124306_5125695_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|142aa|up_7|CP031264.1_5125744_5126170_-	NA	NA|379aa|up_6|CP031264.1_5126184_5127321_-	PRK06696, PRK06696, uridine kinase; Validated	NA|138aa|up_5|CP031264.1_5128605_5129019_-	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|398aa|up_4|CP031264.1_5129448_5130642_+	pfam01139, RtcB, tRNA-splicing ligase RtcB	NA|156aa|up_3|CP031264.1_5130699_5131167_-	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|253aa|up_2|CP031264.1_5131153_5131912_-	COG1396, HipB, Predicted transcriptional regulators [Transcription]	NA|195aa|up_1|CP031264.1_5132029_5132614_+	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains	NA|166aa|up_0|CP031264.1_5132985_5133483_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	cas2|105aa|down_0|CP031264.1_5133864_5134179_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|309aa|down_1|CP031264.1_5134213_5135140_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|248aa|down_2|CP031264.1_5135216_5135960_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|289aa|down_3|CP031264.1_5135956_5136823_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|388aa|down_4|CP031264.1_5136819_5137983_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|248aa|down_5|CP031264.1_5138053_5138797_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|529aa|down_6|CP031264.1_5138866_5140453_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|977aa|down_7|CP031264.1_5140726_5143657_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|93aa|down_8|CP031264.1_5145050_5145329_-	TIGR01003, Phosphocarrier_protein_HPr, Phosphotransferase System HPr (HPr) Family	NA|963aa|down_9|CP031264.1_5145436_5148325_+	TIGR02717, Uncharacterized_protein_MJ0590, acetyl coenzyme A synthetase (ADP forming), alpha domain
GCA_003258605.2_ASM325860v2	CP031264	Streptacidiphilus sp. DSM 106435 chromosome, complete genome	18	5143793-5145042	5,16,8	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	Type I-E	GTGCTCCCCGCGCAGGCGGGGGTGGTCCG,GTGCTCCCCGCGCAGGCGGGGGTGGTCCG,GTGCTCCCCGCGCAGGCGGGGGTGGTCCGN	29,29,30	0	0	NA	NA	NA:NA:NA	19,20,20	20	TypeI-E	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	NA,NA|197aa|down_2|CP031264.1_5148435_5149026_+	NA|195aa|up_9|CP031264.1_5132029_5132614_+	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains	NA|166aa|up_8|CP031264.1_5132985_5133483_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	cas2|105aa|up_7|CP031264.1_5133864_5134179_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|309aa|up_6|CP031264.1_5134213_5135140_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|248aa|up_5|CP031264.1_5135216_5135960_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|289aa|up_4|CP031264.1_5135956_5136823_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|388aa|up_3|CP031264.1_5136819_5137983_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|248aa|up_2|CP031264.1_5138053_5138797_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|529aa|up_1|CP031264.1_5138866_5140453_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|977aa|up_0|CP031264.1_5140726_5143657_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|93aa|down_0|CP031264.1_5145050_5145329_-	TIGR01003, Phosphocarrier_protein_HPr, Phosphotransferase System HPr (HPr) Family	NA|963aa|down_1|CP031264.1_5145436_5148325_+	TIGR02717, Uncharacterized_protein_MJ0590, acetyl coenzyme A synthetase (ADP forming), alpha domain	NA|197aa|down_2|CP031264.1_5148435_5149026_+	NA	NA|414aa|down_3|CP031264.1_5149045_5150287_+	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase	NA|227aa|down_4|CP031264.1_5150354_5151035_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|250aa|down_5|CP031264.1_5151054_5151804_-	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|284aa|down_6|CP031264.1_5151965_5152817_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|349aa|down_7|CP031264.1_5153026_5154073_-	pfam11268, DUF3071, Protein of unknown function (DUF3071)	NA|447aa|down_8|CP031264.1_5154576_5155917_-	TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase	NA|413aa|down_9|CP031264.1_5155876_5157115_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters
GCA_003258605.2_ASM325860v2	CP031264	Streptacidiphilus sp. DSM 106435 chromosome, complete genome	19	5540664-5541111	17	CRISPRCasFinder	no		WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	Orphan	AAGAAGACCGCCGCCAAGAAGACCG	25	4	8	5540887-5540906|5540887-5540906|5540932-5540951|5540977-5540996|5540977-5540996|5540977-5540996|5541022-5541041|5541022-5541041	CP031264.1_1533322-1533303|CP031264.1_2245448-2245429|CP031264.1_72171-72152|CP031264.1_5512763-5512744|CP031264.1_5512856-5512837|CP031264.1_5512931-5512912|CP031264.1_72171-72152|CP031264.1_4011325-4011344	NA	9	9	Orphan	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	NA|457aa|up_4|CP031264.1_5534099_5535470_+,NA|116aa|up_0|CP031264.1_5539518_5539866_-,NA|89aa|down_0|CP031264.1_5541132_5541399_+,NA|78aa|down_3|CP031264.1_5543341_5543575_-,NA|474aa|down_9|CP031264.1_5554149_5555571_+	NA|170aa|up_9|CP031264.1_5523703_5524213_-	COG1403, McrA, Restriction endonuclease [Defense mechanisms]	NA|177aa|up_8|CP031264.1_5524415_5524946_-	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|261aa|up_7|CP031264.1_5525026_5525809_-	pfam07070, Spo0M, SpoOM protein	NA|218aa|up_6|CP031264.1_5525944_5526598_+	PRK00802, PRK00802, DNA-3-methyladenine glycosylase	NA|423aa|up_5|CP031264.1_5526743_5528012_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|457aa|up_4|CP031264.1_5534099_5535470_+	NA	NA|459aa|up_3|CP031264.1_5536444_5537821_-	pfam06245, DUF1015, Protein of unknown function (DUF1015)	NA|173aa|up_2|CP031264.1_5537910_5538429_+	sd00006, TPR, Tetratricopeptide repeat	NA|360aa|up_1|CP031264.1_5538425_5539505_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|116aa|up_0|CP031264.1_5539518_5539866_-	NA	NA|89aa|down_0|CP031264.1_5541132_5541399_+	NA	NA|269aa|down_1|CP031264.1_5541418_5542225_+	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|301aa|down_2|CP031264.1_5542320_5543223_+	PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|78aa|down_3|CP031264.1_5543341_5543575_-	NA	NA|587aa|down_4|CP031264.1_5543746_5545507_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|389aa|down_5|CP031264.1_5546574_5547741_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|642aa|down_6|CP031264.1_5547804_5549730_-	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|554aa|down_7|CP031264.1_5550310_5551972_+	PRK05380, pyrG, CTP synthetase; Validated	NA|214aa|down_8|CP031264.1_5552092_5552734_+	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|474aa|down_9|CP031264.1_5554149_5555571_+	NA
GCA_003258605.2_ASM325860v2	CP031264	Streptacidiphilus sp. DSM 106435 chromosome, complete genome	20	6335957-6336064	18	CRISPRCasFinder	no		WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	Orphan	GGGTGCGCGGCGGGTGGGTCTGTACGGGATCGG	33	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,casR,Cas9_archaeal,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,cas4	NA,NA	NA|286aa|up_9|CP031264.1_6320003_6320861_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|369aa|up_8|CP031264.1_6320894_6322001_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|280aa|up_7|CP031264.1_6321982_6322822_-	TIGR02141, modB_ABC, molybdate ABC transporter, permease protein	NA|280aa|up_6|CP031264.1_6322818_6323658_-	cd13538, PBP2_ModA_like_1, Substrate binding domain of putative molybdate-binding protein;the type 2 periplasmic binding protein fold	NA|402aa|up_5|CP031264.1_6323970_6325176_+	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|499aa|up_4|CP031264.1_6325312_6326809_-	pfam00135, COesterase, Carboxylesterase family	NA|917aa|up_3|CP031264.1_6326949_6329700_-	pfam00553, CBM_2, Cellulose binding domain	NA|459aa|up_2|CP031264.1_6330073_6331450_-	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed	NA|589aa|up_1|CP031264.1_6331619_6333386_+	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|241aa|up_0|CP031264.1_6333400_6334123_+	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|275aa|down_0|CP031264.1_6336182_6337007_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|366aa|down_1|CP031264.1_6337116_6338214_-	PHA03321, PHA03321, tegument protein VP11/12; Provisional	NA|486aa|down_2|CP031264.1_6338702_6340160_+	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional	NA|502aa|down_3|CP031264.1_6340186_6341692_+	cd06450, DOPA_deC_like, DOPA decarboxylase family	NA|448aa|down_4|CP031264.1_6341864_6343208_+	COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|268aa|down_5|CP031264.1_6343253_6344057_-	cd01517, PAP_phosphatase, PAP-phosphatase_like domains	NA|332aa|down_6|CP031264.1_6344145_6345141_-	cd01146, FhuD, Fe3+-siderophore binding domain FhuD	NA|765aa|down_7|CP031264.1_6345261_6347556_-	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]	NA|501aa|down_8|CP031264.1_6347829_6349332_+	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|359aa|down_9|CP031264.1_6349489_6350566_-	COG1309, AcrR, Transcriptional regulator [Transcription]
