assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003268695.1_ASM326869v1	CP029369	Escherichia coli strain WCHEC035148 chromosome, complete genome	1	621472-621611	1	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	49	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,cas14j	NA,NA	NA|336aa|up_9|CP029369.1_613937_614945_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|293aa|up_8|CP029369.1_615150_616029_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|up_7|CP029369.1_616037_617033_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|up_6|CP029369.1_617241_617766_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|up_5|CP029369.1_617759_618263_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|101aa|up_4|CP029369.1_618249_618552_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|up_3|CP029369.1_618602_619046_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|up_2|CP029369.1_619025_619544_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|up_1|CP029369.1_619671_620307_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|347aa|up_0|CP029369.1_620379_621420_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|192aa|down_0|CP029369.1_621624_622200_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|down_1|CP029369.1_622209_622800_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|132aa|down_2|CP029369.1_622819_623215_-	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|679aa|down_3|CP029369.1_623172_625209_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|287aa|down_4|CP029369.1_625273_626134_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|364aa|down_5|CP029369.1_626176_627268_-	pfam00419, Fimbrial, Fimbrial protein	NA|791aa|down_6|CP029369.1_627278_629651_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|232aa|down_7|CP029369.1_630601_631297_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|195aa|down_8|CP029369.1_631376_631961_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|252aa|down_9|CP029369.1_632361_633117_-	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional
GCA_003268695.1_ASM326869v1	CP029369	Escherichia coli strain WCHEC035148 chromosome, complete genome	2	651427-651678	1	PILER-CR	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTTGGAGGAGCAGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAA	54	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,cas14j	NA|101aa|up_8|CP029369.1_642791_643094_-,NA|180aa|down_1|CP029369.1_653185_653725_-	NA|427aa|up_9|CP029369.1_641497_642778_-	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional	NA|101aa|up_8|CP029369.1_642791_643094_-	NA	NA|270aa|up_7|CP029369.1_643026_643836_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|155aa|up_6|CP029369.1_643890_644355_-	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system	NA|112aa|up_5|CP029369.1_644354_644690_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_4|CP029369.1_644838_646410_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|445aa|up_3|CP029369.1_646784_648119_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|257aa|up_2|CP029369.1_648134_648905_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|CP029369.1_648934_649825_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|CP029369.1_649921_651067_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|396aa|down_0|CP029369.1_651976_653164_-	PRK09716, PRK09716, YhaC family protein	NA|180aa|down_1|CP029369.1_653185_653725_-	NA	NA|115aa|down_2|CP029369.1_653980_654325_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|down_3|CP029369.1_654513_655452_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_4|CP029369.1_655550_656540_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_5|CP029369.1_656561_657893_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_6|CP029369.1_657918_659127_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_7|CP029369.1_659160_661455_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|down_8|CP029369.1_661468_661858_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|down_9|CP029369.1_661929_663294_+	PRK15040, PRK15040, L-serine ammonia-lyase
GCA_003268695.1_ASM326869v1	CP029369	Escherichia coli strain WCHEC035148 chromosome, complete genome	3	666259-666376	2	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,cas14j	NA,NA|55aa|down_0|CP029369.1_666449_666614_-	NA|115aa|up_9|CP029369.1_653980_654325_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|CP029369.1_654513_655452_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|CP029369.1_655550_656540_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|CP029369.1_656561_657893_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|CP029369.1_657918_659127_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|CP029369.1_659160_661455_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|CP029369.1_661468_661858_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|CP029369.1_661929_663294_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|CP029369.1_663568_664900_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|CP029369.1_664927_666238_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|CP029369.1_666449_666614_-	NA	NA|234aa|down_1|CP029369.1_666636_667338_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|CP029369.1_667442_668339_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|CP029369.1_668389_668746_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|CP029369.1_668987_669353_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|CP029369.1_669645_670632_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|CP029369.1_670701_671184_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|CP029369.1_671279_671579_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|CP029369.1_671568_671973_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|CP029369.1_671975_672281_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCA_003268695.1_ASM326869v1	CP029369	Escherichia coli strain WCHEC035148 chromosome, complete genome	4	1050535-1051051	2,3,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,cas14j	NA|47aa|up_1|CP029369.1_1049244_1049385_-,NA	NA|434aa|up_9|CP029369.1_1039941_1041243_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|CP029369.1_1041290_1043525_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|CP029369.1_1043602_1043851_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|CP029369.1_1043850_1044186_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|CP029369.1_1044256_1045048_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|CP029369.1_1045275_1046913_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|CP029369.1_1047000_1048299_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|CP029369.1_1048358_1049231_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|CP029369.1_1049244_1049385_-	NA	NA|224aa|up_0|CP029369.1_1049523_1050195_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|CP029369.1_1051688_1053167_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|CP029369.1_1053193_1054471_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|CP029369.1_1054789_1055575_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|CP029369.1_1055644_1057099_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|CP029369.1_1057192_1058530_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|CP029369.1_1058507_1059287_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|CP029369.1_1059283_1060144_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|CP029369.1_1060291_1060867_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|CP029369.1_1060883_1061144_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|CP029369.1_1061134_1062406_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCA_003268695.1_ASM326869v1	CP029369	Escherichia coli strain WCHEC035148 chromosome, complete genome	5	1073436-1074014	4,3,2	CRISPRCasFinder,PILER-CR,CRT	no	cas5,cas6e,cas1,cas2	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	TGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Unclear	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,cas14j	NA,NA	NA|424aa|up_9|CP029369.1_1061134_1062406_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_8|CP029369.1_1062483_1062849_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|CP029369.1_1063164_1064964_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|CP029369.1_1064963_1066676_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|CP029369.1_1066749_1067484_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_4|CP029369.1_1067748_1067901_+	pfam01848, HOK_GEF, Hok/gef family	cas5|249aa|up_3|CP029369.1_1070751_1071498_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP029369.1_1071479_1072130_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|CP029369.1_1072126_1073050_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP029369.1_1073046_1073340_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP029369.1_1074095_1075133_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP029369.1_1075384_1076293_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP029369.1_1076294_1077722_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP029369.1_1077721_1078327_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP029369.1_1078376_1078700_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP029369.1_1078893_1079205_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP029369.1_1079223_1079934_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP029369.1_1079933_1080413_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP029369.1_1080409_1081459_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP029369.1_1081439_1082201_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_003268695.1_ASM326869v1	CP029369	Escherichia coli strain WCHEC035148 chromosome, complete genome	6	1575337-1575454	5	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,cas14j	NA|105aa|up_5|CP029369.1_1570417_1570732_-,NA|284aa|up_4|CP029369.1_1571413_1572265_-,NA	NA|420aa|up_9|CP029369.1_1564609_1565869_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_8|CP029369.1_1565858_1567487_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_7|CP029369.1_1567759_1569118_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_6|CP029369.1_1569122_1570199_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|105aa|up_5|CP029369.1_1570417_1570732_-	NA	NA|284aa|up_4|CP029369.1_1571413_1572265_-	NA	NA|69aa|up_3|CP029369.1_1572730_1572937_-	PRK09729, PRK09729, hypothetical protein; Provisional	NA|217aa|up_2|CP029369.1_1573151_1573802_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|CP029369.1_1573855_1574110_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|CP029369.1_1574109_1575240_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|CP029369.1_1575473_1577759_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|CP029369.1_1578454_1582207_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|CP029369.1_1582334_1583057_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|CP029369.1_1583203_1585831_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|CP029369.1_1585979_1587668_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|CP029369.1_1587664_1588288_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1535aa|down_6|CP029369.1_1588221_1592826_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|CP029369.1_1592826_1594476_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|CP029369.1_1594480_1595257_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|CP029369.1_1595330_1596515_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCA_003268695.1_ASM326869v1	CP029369	Escherichia coli strain WCHEC035148 chromosome, complete genome	7	2169840-2169963	6	CRISPRCasFinder	no	DEDDh	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,cas14j	NA,NA|75aa|down_7|CP029369.1_2178548_2178773_-,NA|30aa|down_8|CP029369.1_2178859_2178949_+	NA|471aa|up_9|CP029369.1_2159294_2160707_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|CP029369.1_2161262_2161472_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|CP029369.1_2161927_2162554_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|CP029369.1_2162574_2164677_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|CP029369.1_2164680_2165328_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|CP029369.1_2165391_2166060_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|CP029369.1_2166056_2166842_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|CP029369.1_2166845_2167658_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|CP029369.1_2167669_2169274_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|CP029369.1_2169399_2169705_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|CP029369.1_2170277_2171534_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|CP029369.1_2171574_2172948_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|CP029369.1_2173162_2173804_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|CP029369.1_2173843_2174992_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|CP029369.1_2175282_2176494_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|CP029369.1_2176606_2177539_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|CP029369.1_2177535_2178561_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|CP029369.1_2178548_2178773_-	NA	NA|30aa|down_8|CP029369.1_2178859_2178949_+	NA	NA|390aa|down_9|CP029369.1_2179114_2180284_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCA_003268695.1_ASM326869v1	CP029369	Escherichia coli strain WCHEC035148 chromosome, complete genome	9	3130405-3130549	8	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,cas14j	NA|94aa|up_8|CP029369.1_3125790_3126072_+,NA|177aa|up_6|CP029369.1_3126602_3127133_-,NA|84aa|up_5|CP029369.1_3127023_3127275_-,NA|62aa|up_4|CP029369.1_3127329_3127515_-,NA|56aa|up_3|CP029369.1_3127447_3127615_+,NA|70aa|down_9|CP029369.1_3141269_3141479_-	NA|64aa|up_9|CP029369.1_3125588_3125780_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_8|CP029369.1_3125790_3126072_+	NA	NA|74aa|up_7|CP029369.1_3126170_3126392_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|177aa|up_6|CP029369.1_3126602_3127133_-	NA	NA|84aa|up_5|CP029369.1_3127023_3127275_-	NA	NA|62aa|up_4|CP029369.1_3127329_3127515_-	NA	NA|56aa|up_3|CP029369.1_3127447_3127615_+	NA	NA|73aa|up_2|CP029369.1_3127654_3127873_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|CP029369.1_3127850_3128921_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|CP029369.1_3129055_3130339_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|CP029369.1_3130572_3132834_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|CP029369.1_3133016_3134450_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|CP029369.1_3134525_3135578_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|CP029369.1_3135761_3136715_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|CP029369.1_3136755_3137751_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|CP029369.1_3137905_3138724_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|CP029369.1_3138724_3139783_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|CP029369.1_3139785_3140475_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|CP029369.1_3140474_3141248_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|70aa|down_9|CP029369.1_3141269_3141479_-	NA
GCA_003268695.1_ASM326869v1	CP029369	Escherichia coli strain WCHEC035148 chromosome, complete genome	10	3624679-3624832	9	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,cas14j	NA|76aa|up_4|CP029369.1_3620179_3620407_+,NA|150aa|down_8|CP029369.1_3634409_3634859_-	NA|134aa|up_9|CP029369.1_3615598_3616000_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_8|CP029369.1_3616057_3617302_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_7|CP029369.1_3617393_3617852_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_6|CP029369.1_3618112_3619570_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|89aa|up_5|CP029369.1_3619926_3620193_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|76aa|up_4|CP029369.1_3620179_3620407_+	NA	NA|151aa|up_3|CP029369.1_3620499_3620952_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_2|CP029369.1_3620948_3622004_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|263aa|up_1|CP029369.1_3622074_3622863_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|CP029369.1_3622804_3624544_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|CP029369.1_3624861_3625359_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|253aa|down_1|CP029369.1_3625534_3626293_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|247aa|down_2|CP029369.1_3626584_3627325_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_3|CP029369.1_3627295_3628063_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_4|CP029369.1_3628268_3628847_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_5|CP029369.1_3629086_3631531_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_6|CP029369.1_3631573_3632047_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_7|CP029369.1_3632200_3632971_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|150aa|down_8|CP029369.1_3634409_3634859_-	NA	NA|1020aa|down_9|CP029369.1_3634870_3637930_-	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]
GCA_003268695.1_ASM326869v1	CP029369	Escherichia coli strain WCHEC035148 chromosome, complete genome	11	3814744-3814859	10	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,cas14j	NA,NA	NA|393aa|up_9|CP029369.1_3802759_3803938_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|CP029369.1_3804039_3804171_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|CP029369.1_3804259_3805915_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|CP029369.1_3806078_3807062_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|CP029369.1_3807037_3808648_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|CP029369.1_3808631_3809330_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|CP029369.1_3809443_3810208_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|CP029369.1_3810293_3811172_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|CP029369.1_3811510_3813211_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|CP029369.1_3813221_3814724_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|CP029369.1_3814923_3815619_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|CP029369.1_3815693_3818045_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|CP029369.1_3818209_3821116_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|CP029369.1_3821127_3821787_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|CP029369.1_3821903_3822719_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|CP029369.1_3822973_3825328_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|CP029369.1_3825380_3826667_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|CP029369.1_3826666_3827656_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|CP029369.1_3827652_3828474_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|CP029369.1_3828476_3828854_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
