assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003312875.1_ASM331287v1	CP015163	Amycolatopsis albispora strain WP1 chromosome, complete genome	1	212701-212791	1	CRISPRCasFinder	no		csa3,WYL,cas3,casR,DEDDh,cas4,DinG,RT	Orphan	TCCCTGCCGCTGGTGTATTTCCG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,casR,DEDDh,cas4,DinG,RT	NA|258aa|up_9|CP015163.1_207272_208046_+,NA|127aa|up_8|CP015163.1_208104_208485_-,NA|60aa|up_7|CP015163.1_208484_208664_-,NA|136aa|up_5|CP015163.1_209168_209576_-,NA|88aa|up_4|CP015163.1_209572_209836_-,NA|142aa|up_3|CP015163.1_209828_210254_-,NA|139aa|up_2|CP015163.1_210282_210699_-,NA|60aa|up_1|CP015163.1_210695_210875_-,NA|120aa|down_1|CP015163.1_214194_214554_+,NA|78aa|down_4|CP015163.1_216866_217100_-,NA|327aa|down_5|CP015163.1_218849_219830_+,NA|214aa|down_6|CP015163.1_219920_220562_+,NA|70aa|down_8|CP015163.1_221714_221924_+,NA|120aa|down_9|CP015163.1_221927_222287_+	NA|258aa|up_9|CP015163.1_207272_208046_+	NA	NA|127aa|up_8|CP015163.1_208104_208485_-	NA	NA|60aa|up_7|CP015163.1_208484_208664_-	NA	NA|134aa|up_6|CP015163.1_208663_209065_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|136aa|up_5|CP015163.1_209168_209576_-	NA	NA|88aa|up_4|CP015163.1_209572_209836_-	NA	NA|142aa|up_3|CP015163.1_209828_210254_-	NA	NA|139aa|up_2|CP015163.1_210282_210699_-	NA	NA|60aa|up_1|CP015163.1_210695_210875_-	NA	NA|377aa|up_0|CP015163.1_211506_212637_+	pfam06067, DUF932, Domain of unknown function (DUF932)	NA|223aa|down_0|CP015163.1_213515_214184_+	cd01713, PAPS_reductase, This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	NA|120aa|down_1|CP015163.1_214194_214554_+	NA	NA|153aa|down_2|CP015163.1_214767_215226_+	pfam05119, Terminase_4, Phage terminase, small subunit	NA|564aa|down_3|CP015163.1_215185_216877_+	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only]	NA|78aa|down_4|CP015163.1_216866_217100_-	NA	NA|327aa|down_5|CP015163.1_218849_219830_+	NA	NA|214aa|down_6|CP015163.1_219920_220562_+	NA	NA|330aa|down_7|CP015163.1_220612_221602_+	pfam17236, DUF5309, Family of unknown function (DUF5309)	NA|70aa|down_8|CP015163.1_221714_221924_+	NA	NA|120aa|down_9|CP015163.1_221927_222287_+	NA
GCA_003312875.1_ASM331287v1	CP015163	Amycolatopsis albispora strain WP1 chromosome, complete genome	3	3013085-3013184	2	CRISPRCasFinder	no		csa3,WYL,cas3,casR,DEDDh,cas4,DinG,RT	Orphan	CGAATGTGGCTTTCGTGACGCGG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,casR,DEDDh,cas4,DinG,RT	NA|116aa|up_0|CP015163.1_3012566_3012914_+,NA|142aa|down_9|CP015163.1_3025051_3025477_-	NA|143aa|up_9|CP015163.1_3001157_3001586_-	pfam14042, DUF4247, Domain of unknown function (DUF4247)	NA|203aa|up_8|CP015163.1_3001613_3002222_-	pfam13785, DUF4178, Domain of unknown function (DUF4178)	NA|239aa|up_7|CP015163.1_3002870_3003587_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|419aa|up_6|CP015163.1_3003647_3004904_+	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis]	NA|314aa|up_5|CP015163.1_3005066_3006008_+	pfam00665, rve, Integrase core domain	NA|227aa|up_4|CP015163.1_3006004_3006685_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|751aa|up_3|CP015163.1_3006819_3009072_+	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites	NA|397aa|up_2|CP015163.1_3009189_3010380_+	TIGR01930, 3-ketoacyl-CoA_thiolase, acetyl-CoA acetyltransferases	NA|703aa|up_1|CP015163.1_3010376_3012485_+	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ	NA|116aa|up_0|CP015163.1_3012566_3012914_+	NA	NA|550aa|down_0|CP015163.1_3013354_3015004_-	cd09819, An_peroxidase_bacterial_1, Uncharacterized bacterial family of heme peroxidases	NA|343aa|down_1|CP015163.1_3015084_3016113_-	pfam06224, HTH_42, Winged helix DNA-binding domain	NA|380aa|down_2|CP015163.1_3016109_3017249_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|224aa|down_3|CP015163.1_3017263_3017935_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|499aa|down_4|CP015163.1_3017987_3019484_-	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|485aa|down_5|CP015163.1_3019586_3021041_+	cd11479, SLC5sbd_u3, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain	NA|318aa|down_6|CP015163.1_3021037_3021991_+	cd11592, Agmatinase_PAH, Agmatinase-like family includes proclavaminic acid amidinohydrolase	NA|550aa|down_7|CP015163.1_3021987_3023637_+	COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]	NA|465aa|down_8|CP015163.1_3023645_3025040_+	cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like	NA|142aa|down_9|CP015163.1_3025051_3025477_-	NA
GCA_003312875.1_ASM331287v1	CP015163	Amycolatopsis albispora strain WP1 chromosome, complete genome	4	3732201-3732296	3	CRISPRCasFinder	no		csa3,WYL,cas3,casR,DEDDh,cas4,DinG,RT	Orphan	GTCAGCCACGAGCCGCCTCCTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,casR,DEDDh,cas4,DinG,RT	NA|179aa|up_3|CP015163.1_3727342_3727879_-,NA	NA|504aa|up_9|CP015163.1_3719838_3721350_+	cd03399, SPFH_flotillin, Flotillin or reggie family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|333aa|up_8|CP015163.1_3721492_3722491_+	PRK08241, PRK08241, RNA polymerase subunit sigma-70	NA|199aa|up_7|CP015163.1_3722509_3723106_+	TIGR03086, TIGR03086, TIGR03086 family protein	NA|418aa|up_6|CP015163.1_3723403_3724657_+	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|464aa|up_5|CP015163.1_3724790_3726182_-	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|296aa|up_4|CP015163.1_3726277_3727165_-	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]	NA|179aa|up_3|CP015163.1_3727342_3727879_-	NA	NA|293aa|up_2|CP015163.1_3727979_3728858_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|351aa|up_1|CP015163.1_3728928_3729981_+	cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta-reductase-like proteins (5beta-POR), atypical (a) SDRs	NA|172aa|up_0|CP015163.1_3729985_3730501_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|343aa|down_0|CP015163.1_3737174_3738203_-	PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed	NA|255aa|down_1|CP015163.1_3738221_3738986_-	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain	NA|135aa|down_2|CP015163.1_3739099_3739504_+	TIGR00026, Hypothetical_protein_Rv1261c/MT1299/Mb1292c	NA|397aa|down_3|CP015163.1_3739500_3740691_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|408aa|down_4|CP015163.1_3741305_3742529_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|271aa|down_5|CP015163.1_3742572_3743385_-	pfam04016, DUF364, Putative heavy-metal chelation	NA|254aa|down_6|CP015163.1_3743399_3744161_-	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH)	NA|342aa|down_7|CP015163.1_3744157_3745183_-	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|244aa|down_8|CP015163.1_3745182_3745914_-	PRK14968, PRK14968, putative methyltransferase; Provisional	NA|489aa|down_9|CP015163.1_3745910_3747377_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
GCA_003312875.1_ASM331287v1	CP015163	Amycolatopsis albispora strain WP1 chromosome, complete genome	5	3778449-3778582	4	CRISPRCasFinder	no		csa3,WYL,cas3,casR,DEDDh,cas4,DinG,RT	Orphan	CAGCCACACAACACCCGCAGCGGCTCGCGCTGGCCCA	37	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,casR,DEDDh,cas4,DinG,RT	NA,NA	NA|380aa|up_9|CP015163.1_3766427_3767567_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|288aa|up_8|CP015163.1_3767563_3768427_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|274aa|up_7|CP015163.1_3768432_3769254_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|257aa|up_6|CP015163.1_3769262_3770033_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|317aa|up_5|CP015163.1_3770043_3770994_-	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|1040aa|up_4|CP015163.1_3771719_3774839_+	pfam08376, NIT, Nitrate and nitrite sensing	NA|156aa|up_3|CP015163.1_3774835_3775303_+	smart00960, Robl_LC7, Roadblock/LC7 domain	NA|195aa|up_2|CP015163.1_3775327_3775912_+	COG2229, COG2229, Predicted GTPase [General function prediction only]	NA|391aa|up_1|CP015163.1_3775933_3777106_+	cd01151, GCD, Glutaryl-CoA dehydrogenase	NA|367aa|up_0|CP015163.1_3777175_3778276_+	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain	NA|210aa|down_0|CP015163.1_3779041_3779671_+	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family	NA|265aa|down_1|CP015163.1_3779639_3780434_-	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase	NA|308aa|down_2|CP015163.1_3780477_3781401_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|550aa|down_3|CP015163.1_3781551_3783201_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|159aa|down_4|CP015163.1_3783240_3783717_+	pfam03745, DUF309, Domain of unknown function (DUF309)	NA|317aa|down_5|CP015163.1_3783949_3784900_+	PRK09393, ftrA, transcriptional activator FtrA; Provisional	NA|367aa|down_6|CP015163.1_3785552_3786653_-	pfam09587, PGA_cap, Bacterial capsule synthesis protein PGA_cap	NA|296aa|down_7|CP015163.1_3786691_3787579_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|520aa|down_8|CP015163.1_3787589_3789149_-	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|233aa|down_9|CP015163.1_3789215_3789914_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]
GCA_003312875.1_ASM331287v1	CP015163	Amycolatopsis albispora strain WP1 chromosome, complete genome	6	4307601-4307810	5,1	CRISPRCasFinder,CRT	no	WYL	csa3,WYL,cas3,casR,DEDDh,cas4,DinG,RT	Unclear	GTCTTCCCCGCGCGAGCGGGGATGGTCC,GTCTTCCCCGCGCGAGCGGGGGTGGTCCNN	28,30	0	0	NA	NA	I-E:I-C,I-E,II-B	3,3	3	Orphan	csa3,WYL,cas3,casR,DEDDh,cas4,DinG,RT	NA|177aa|up_4|CP015163.1_4302465_4302996_+,NA|197aa|up_3|CP015163.1_4303550_4304141_+,NA|134aa|up_2|CP015163.1_4304548_4304950_+,NA	WYL|324aa|up_9|CP015163.1_4299253_4300225_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|134aa|up_8|CP015163.1_4300314_4300716_+	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|205aa|up_7|CP015163.1_4300736_4301351_-	cd02588, HAD_L2-DEX, L-2-haloacid dehalogenase	NA|112aa|up_6|CP015163.1_4301432_4301768_+	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|202aa|up_5|CP015163.1_4301751_4302357_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|177aa|up_4|CP015163.1_4302465_4302996_+	NA	NA|197aa|up_3|CP015163.1_4303550_4304141_+	NA	NA|134aa|up_2|CP015163.1_4304548_4304950_+	NA	NA|383aa|up_1|CP015163.1_4305049_4306198_+	pfam12671, Amidase_6, Putative amidase domain	NA|223aa|up_0|CP015163.1_4306816_4307485_+	pfam10935, DUF2637, Protein of unknown function (DUF2637)	NA|260aa|down_0|CP015163.1_4309004_4309784_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|496aa|down_1|CP015163.1_4309864_4311352_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|418aa|down_2|CP015163.1_4311451_4312705_+	PRK06185, PRK06185, FAD-dependent oxidoreductase	NA|258aa|down_3|CP015163.1_4312679_4313453_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|536aa|down_4|CP015163.1_4313463_4315071_-	PRK12344, PRK12344, putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional	NA|346aa|down_5|CP015163.1_4315302_4316340_-	PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional	NA|1112aa|down_6|CP015163.1_4316612_4319948_-	cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins	NA|533aa|down_7|CP015163.1_4320242_4321841_-	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional	NA|189aa|down_8|CP015163.1_4322007_4322574_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|298aa|down_9|CP015163.1_4322663_4323557_+	TIGR03620, F420_MSMEG_4141, probable F420-dependent oxidoreductase, MSMEG_4141 family
GCA_003312875.1_ASM331287v1	CP015163	Amycolatopsis albispora strain WP1 chromosome, complete genome	7	5504896-5504999	6	CRISPRCasFinder	no		csa3,WYL,cas3,casR,DEDDh,cas4,DinG,RT	Orphan	AACGTGCCCAGCCCCCATCCAAAC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,casR,DEDDh,cas4,DinG,RT	NA,NA	NA|201aa|up_9|CP015163.1_5493871_5494474_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|383aa|up_8|CP015163.1_5494549_5495698_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|200aa|up_7|CP015163.1_5495786_5496386_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|405aa|up_6|CP015163.1_5496370_5497585_-	cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	NA|302aa|up_5|CP015163.1_5497610_5498516_-	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|275aa|up_4|CP015163.1_5498571_5499396_+	cd07742, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|463aa|up_3|CP015163.1_5499452_5500841_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|409aa|up_2|CP015163.1_5500900_5502127_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|230aa|up_1|CP015163.1_5502236_5502926_-	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase	NA|556aa|up_0|CP015163.1_5503123_5504791_+	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]	NA|369aa|down_0|CP015163.1_5505163_5506270_-	pfam03583, LIP, Secretory lipase	NA|206aa|down_1|CP015163.1_5506521_5507139_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|237aa|down_2|CP015163.1_5507125_5507836_-	pfam01774, UreD, UreD urease accessory protein	NA|237aa|down_3|CP015163.1_5507832_5508543_-	cd05540, UreG, urease accessory protein UreG	NA|222aa|down_4|CP015163.1_5508532_5509198_-	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|573aa|down_5|CP015163.1_5509197_5510916_-	PRK13206, ureC, urease subunit alpha; Reviewed	NA|98aa|down_6|CP015163.1_5510918_5511212_-	pfam00699, Urease_beta, Urease beta subunit	NA|101aa|down_7|CP015163.1_5511224_5511527_-	pfam00547, Urease_gamma, Urease, gamma subunit	NA|383aa|down_8|CP015163.1_5511771_5512920_+	PRK12350, PRK12350, citrate synthase 2; Provisional	NA|207aa|down_9|CP015163.1_5512996_5513617_-	COG1309, AcrR, Transcriptional regulator [Transcription]
GCA_003312875.1_ASM331287v1	CP015163	Amycolatopsis albispora strain WP1 chromosome, complete genome	9	5878718-5878829	8	CRISPRCasFinder	no	WYL	csa3,WYL,cas3,casR,DEDDh,cas4,DinG,RT	Unclear	GGGGCCGGGTGTCACGAATGTGGCTTTCG	29	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,casR,DEDDh,cas4,DinG,RT	NA,NA|457aa|down_6|CP015163.1_5887100_5888471_+,NA|379aa|down_8|CP015163.1_5888889_5890026_+,NA|177aa|down_9|CP015163.1_5890025_5890556_+	NA|334aa|up_9|CP015163.1_5870526_5871528_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|310aa|up_8|CP015163.1_5871534_5872464_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|335aa|up_7|CP015163.1_5872460_5873465_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|544aa|up_6|CP015163.1_5873567_5875199_-	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold	NA|200aa|up_5|CP015163.1_5875391_5875991_-	PRK06547, PRK06547, hypothetical protein; Provisional	NA|199aa|up_4|CP015163.1_5875990_5876587_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|122aa|up_3|CP015163.1_5876596_5876962_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|214aa|up_2|CP015163.1_5877216_5877858_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|146aa|up_1|CP015163.1_5877842_5878280_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|144aa|up_0|CP015163.1_5878278_5878710_+	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|761aa|down_0|CP015163.1_5878875_5881158_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|513aa|down_1|CP015163.1_5881308_5882847_-	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]	NA|476aa|down_2|CP015163.1_5882923_5884351_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|235aa|down_3|CP015163.1_5884352_5885057_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|383aa|down_4|CP015163.1_5885154_5886303_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_5|CP015163.1_5886335_5886965_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|457aa|down_6|CP015163.1_5887100_5888471_+	NA	NA|137aa|down_7|CP015163.1_5888467_5888878_+	pfam13115, YtkA, YtkA-like	NA|379aa|down_8|CP015163.1_5888889_5890026_+	NA	NA|177aa|down_9|CP015163.1_5890025_5890556_+	NA
GCA_003312875.1_ASM331287v1	CP015163	Amycolatopsis albispora strain WP1 chromosome, complete genome	10	6136792-6136893	9	CRISPRCasFinder	no		csa3,WYL,cas3,casR,DEDDh,cas4,DinG,RT	Orphan	CCGTTGATTGCCGGGGCTTGGCTT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,casR,DEDDh,cas4,DinG,RT	NA|176aa|up_6|CP015163.1_6127065_6127593_-,NA|147aa|up_0|CP015163.1_6134437_6134878_-,NA|203aa|down_3|CP015163.1_6138717_6139326_-,NA|207aa|down_6|CP015163.1_6141631_6142252_+,NA|296aa|down_7|CP015163.1_6142248_6143136_+	NA|534aa|up_9|CP015163.1_6123200_6124802_-	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain	NA|114aa|up_8|CP015163.1_6124798_6125140_-	pfam04341, DUF485, Protein of unknown function, DUF485	NA|597aa|up_7|CP015163.1_6125244_6127035_-	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain	NA|176aa|up_6|CP015163.1_6127065_6127593_-	NA	NA|277aa|up_5|CP015163.1_6127595_6128426_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|438aa|up_4|CP015163.1_6128511_6129825_-	cd02182, GH16_Strep_laminarinase_like, Streptomyces laminarinase-like, member of glycosyl hydrolase family 16	NA|280aa|up_3|CP015163.1_6130119_6130959_-	cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad	NA|362aa|up_2|CP015163.1_6132504_6133590_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|284aa|up_1|CP015163.1_6133582_6134434_-	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]	NA|147aa|up_0|CP015163.1_6134437_6134878_-	NA	NA|198aa|down_0|CP015163.1_6137264_6137858_+	PRK13211, PRK13211, N-acetylglucosamine-binding protein GbpA	NA|137aa|down_1|CP015163.1_6137919_6138330_-	pfam15585, Imm7, Immunity protein 7	NA|98aa|down_2|CP015163.1_6138352_6138646_-	COG4298, COG4298, Uncharacterized protein conserved in bacteria [Function unknown]	NA|203aa|down_3|CP015163.1_6138717_6139326_-	NA	NA|457aa|down_4|CP015163.1_6139547_6140918_+	cd05661, M28_like_PA, M28 Zn-peptidase containing a PA domain insert	NA|206aa|down_5|CP015163.1_6140922_6141540_-	PRK00058, PRK00058, peptide-methionine (S)-S-oxide reductase MsrA	NA|207aa|down_6|CP015163.1_6141631_6142252_+	NA	NA|296aa|down_7|CP015163.1_6142248_6143136_+	NA	NA|378aa|down_8|CP015163.1_6143132_6144266_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|402aa|down_9|CP015163.1_6144319_6145525_+	PHA03247, PHA03247, large tegument protein UL36; Provisional
GCA_003312875.1_ASM331287v1	CP015163	Amycolatopsis albispora strain WP1 chromosome, complete genome	11	6531533-6531763	10	CRISPRCasFinder	no		csa3,WYL,cas3,casR,DEDDh,cas4,DinG,RT	Orphan	GCCGGGGCGGGCGCCTTGGTCCGGCGG	27	0	0	NA	NA	NA	4	4	Orphan	csa3,WYL,cas3,casR,DEDDh,cas4,DinG,RT	NA|264aa|up_3|CP015163.1_6526390_6527182_-,NA|721aa|down_3|CP015163.1_6534902_6537065_-	NA|315aa|up_9|CP015163.1_6520246_6521191_-	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed	NA|441aa|up_8|CP015163.1_6521219_6522542_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|207aa|up_7|CP015163.1_6522754_6523375_+	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|383aa|up_6|CP015163.1_6523506_6524655_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|108aa|up_5|CP015163.1_6524907_6525231_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|331aa|up_4|CP015163.1_6525263_6526256_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|264aa|up_3|CP015163.1_6526390_6527182_-	NA	NA|217aa|up_2|CP015163.1_6527178_6527829_-	PRK09643, PRK09643, RNA polymerase sigma factor SigM; Reviewed	NA|530aa|up_1|CP015163.1_6527872_6529462_-	cd13973, PK_MviN-like, Pseudokinase domain of the peptidoglycan biosynthetic protein MviN	NA|604aa|up_0|CP015163.1_6529537_6531349_-	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|282aa|down_0|CP015163.1_6532377_6533223_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|215aa|down_1|CP015163.1_6533219_6533864_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|309aa|down_2|CP015163.1_6533866_6534793_-	cd13690, PBP2_GluB, Substrate binding domain of ABC glutamate transporter; the type 2 periplasmic binding protein fold	NA|721aa|down_3|CP015163.1_6534902_6537065_-	NA	NA|177aa|down_4|CP015163.1_6537061_6537592_-	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|488aa|down_5|CP015163.1_6537693_6539157_+	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|436aa|down_6|CP015163.1_6539244_6540552_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|287aa|down_7|CP015163.1_6540548_6541409_+	pfam08242, Methyltransf_12, Methyltransferase domain	NA|639aa|down_8|CP015163.1_6541412_6543329_-	pfam14021, TNT, Tuberculosis necrotizing toxin	NA|362aa|down_9|CP015163.1_6543413_6544499_-	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase
