assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003324875.1_ASM332487v1	CP030005	Salmonella enterica subsp. enterica strain SA20141895 chromosome, complete genome	1	943795-944250	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	6,7,7	7	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA|57aa|down_2|CP030005.1_945526_945697_+,NA|81aa|down_6|CP030005.1_950231_950474_-	NA|179aa|up_9|CP030005.1_932341_932878_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|CP030005.1_932874_933345_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|CP030005.1_933359_933866_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|CP030005.1_933885_934659_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|CP030005.1_934671_937371_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|CP030005.1_937450_938038_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|CP030005.1_938644_939445_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP030005.1_939672_941310_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP030005.1_941392_942691_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP030005.1_942826_943498_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP030005.1_944348_945146_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP030005.1_945235_945598_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP030005.1_945526_945697_+	NA	NA|600aa|down_3|CP030005.1_946021_947821_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP030005.1_947820_949533_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|CP030005.1_949608_950343_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|81aa|down_6|CP030005.1_950231_950474_-	NA	NA|318aa|down_7|CP030005.1_950555_951509_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_8|CP030005.1_951952_954616_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_9|CP030005.1_954627_956184_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1
GCA_003324875.1_ASM332487v1	CP030005	Salmonella enterica subsp. enterica strain SA20141895 chromosome, complete genome	2	960509-960842	2	CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG	29	0	0	NA	NA	I-E	5	5	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA|81aa|up_9|CP030005.1_950231_950474_-,NA	NA|81aa|up_9|CP030005.1_950231_950474_-	NA	NA|318aa|up_8|CP030005.1_950555_951509_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|CP030005.1_951952_954616_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|CP030005.1_954627_956184_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|CP030005.1_956180_956741_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|CP030005.1_956754_957813_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP030005.1_957823_958570_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP030005.1_958551_959202_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP030005.1_959198_960119_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP030005.1_960118_960412_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP030005.1_960856_961903_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP030005.1_962153_963062_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP030005.1_963071_964511_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP030005.1_964497_965103_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP030005.1_965120_965477_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP030005.1_965667_965979_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP030005.1_965997_966708_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP030005.1_966707_967187_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP030005.1_967183_968233_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP030005.1_968213_968975_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_003324875.1_ASM332487v1	CP030005	Salmonella enterica subsp. enterica strain SA20141895 chromosome, complete genome	3	2979954-2980082	3	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Orphan	AGCGAGTCAATCCCCCCCTCACCGCCATATTCAAG	35	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA|92aa|up_9|CP030005.1_2970419_2970695_+,NA|128aa|up_4|CP030005.1_2976356_2976740_+,NA|65aa|down_3|CP030005.1_2983645_2983840_-	NA|92aa|up_9|CP030005.1_2970419_2970695_+	NA	NA|323aa|up_8|CP030005.1_2971036_2972005_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_7|CP030005.1_2972118_2973885_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_6|CP030005.1_2973885_2975607_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_5|CP030005.1_2975651_2976356_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|128aa|up_4|CP030005.1_2976356_2976740_+	NA	NA|73aa|up_3|CP030005.1_2976667_2976886_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|304aa|up_2|CP030005.1_2976976_2977888_-	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional	NA|287aa|up_1|CP030005.1_2977996_2978857_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|226aa|up_0|CP030005.1_2978876_2979554_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|759aa|down_0|CP030005.1_2980518_2982795_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|CP030005.1_2982825_2983146_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|74aa|down_2|CP030005.1_2983469_2983691_+	PRK14998, PRK14998, cold shock-like protein CspD; Provisional	NA|65aa|down_3|CP030005.1_2983645_2983840_-	NA	NA|649aa|down_4|CP030005.1_2983820_2985767_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|373aa|down_5|CP030005.1_2985763_2986882_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|323aa|down_6|CP030005.1_2987009_2987978_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_7|CP030005.1_2987974_2989633_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|300aa|down_8|CP030005.1_2989833_2990733_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|CP030005.1_2990876_2992529_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
