The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP030207	Salmonella enterica strain SA19992307 chromosome, complete genome	4844554	1118051	1183824	4844554	tRNA,capsid,tail,plate,transposase,portal,integrase,lysis,head	Salmonella_phage(87.8%)	65	1121088:1121103	1134356:1134371
AXD47000.1|1118051_1119162_+|transposase	IS3-like element IS1351 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	25.6	7.6e-07
AXD47001.1|1119958_1120762_-	DUF3800 domain-containing protein	NA	Q19UP3	Mannheimia_phage	44.7	1.2e-62
1121088:1121103	attL	TCAGCCAGCAGGCTTT	NA	NA	NA	NA
AXD47002.1|1121160_1121754_-	hypothetical protein	NA	NA	NA	NA	NA
AXD47003.1|1122013_1123039_-|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	99.1	9.2e-201
AXD47004.1|1123042_1123675_-	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.1e-66
AXD47005.1|1123791_1124031_+	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.7	8.8e-38
AXD47006.1|1124584_1124818_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	59.1	3.6e-12
AXD47007.1|1124765_1125224_-	hypothetical protein	NA	NA	NA	NA	NA
AXD47008.1|1125443_1125785_+	hypothetical protein	NA	E5G6L5	Salmonella_phage	85.0	4.2e-49
AXD47009.1|1125852_1126086_+	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	2.0e-26
AXD47010.1|1126085_1126313_+	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	93.3	1.3e-35
AXD47011.1|1126309_1127167_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	99.6	1.5e-164
AXD47012.1|1127163_1129560_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	93.9	0.0e+00
AXD47013.1|1129715_1129904_+	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	100.0	2.7e-26
AXD47014.1|1129972_1130272_-	hypothetical protein	NA	NA	NA	NA	NA
AXD47015.1|1130382_1131261_-	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.8	4.0e-51
AXD47016.1|1131681_1132836_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
AXD47017.1|1132840_1133620_+	hypothetical protein	NA	NA	NA	NA	NA
AXD47018.1|1133616_1134648_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	87.3	5.9e-171
1134356:1134371	attR	AAAGCCTGCTGGCTGA	NA	NA	NA	NA
AXD47019.1|1134647_1136414_-	oxidoreductase	NA	A0A1S6KZW3	Salmonella_phage	99.3	0.0e+00
AXD47020.1|1136556_1137390_+|capsid	capsid protein	capsid	A0A1S6KZW9	Salmonella_phage	84.5	5.9e-121
AXD47021.1|1137406_1138465_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	4.9e-181
AXD47022.1|1138468_1139119_+	hypothetical protein	NA	E5G6M7	Salmonella_phage	96.3	8.7e-112
AXD47023.1|1139214_1139679_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	4.2e-76
AXD47024.1|1139678_1139882_+|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
AXD47025.1|1139885_1140101_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
AXD50400.1|1140120_1140594_+	lysozyme	NA	E5G6N1	Salmonella_phage	91.0	3.7e-80
AXD47026.1|1140595_1140973_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	39.2	5.1e-16
AXD47027.1|1140969_1141398_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	76.1	1.3e-47
AXD47028.1|1141327_1141531_+	hypothetical protein	NA	A0A1S6KZX6	Salmonella_phage	73.1	8.9e-23
AXD47029.1|1141493_1141925_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	93.7	1.3e-71
AXD47030.1|1141917_1142364_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	81.1	3.1e-60
AXD47031.1|1142390_1143257_-	hypothetical protein	NA	NA	NA	NA	NA
AXD47032.1|1143352_1143931_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	1.8e-92
AXD47033.1|1143927_1144287_+|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	91.5	3.5e-54
AXD47034.1|1144273_1145182_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	98.0	7.2e-157
AXD47035.1|1145174_1145780_+|tail	phage tail protein I	tail	E5G6N9	Salmonella_phage	100.0	1.3e-117
AXD47036.1|1145776_1147462_+|tail	phage tail protein	tail	A0A1S6KZZ8	Salmonella_phage	50.6	3.5e-128
AXD47037.1|1147464_1147992_+|tail	tail fiber assembly protein	tail	NA	NA	NA	NA
AXD47038.1|1148122_1149295_+|tail	phage tail protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	1.3e-222
AXD47039.1|1149304_1149820_+|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
AXD47040.1|1149874_1150177_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	99.0	9.4e-45
AXD47041.1|1150191_1150311_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	97.4	8.8e-15
AXD47042.1|1150303_1153111_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	99.0	0.0e+00
AXD47043.1|1153107_1153593_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	99.2	8.3e-67
AXD47044.1|1153589_1154690_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	98.6	9.0e-194
AXD50401.1|1154758_1154977_+	levansucrase regulator	NA	Q53ZE7	Salmonella_virus	100.0	2.1e-38
AXD50402.1|1155528_1156692_-	secretion protein HlyD	NA	NA	NA	NA	NA
AXD47045.1|1158871_1160281_-	type I secretion protein TolC	NA	NA	NA	NA	NA
AXD47046.1|1160345_1171565_-	biofilm-associated protein BapA	NA	NA	NA	NA	NA
AXD50403.1|1172178_1172661_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
AXD47047.1|1172810_1173287_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
AXD47048.1|1173276_1173567_+	RnfH family protein	NA	NA	NA	NA	NA
AXD47049.1|1173732_1174071_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
AXD47050.1|1174219_1175881_-	DNA repair protein RecN	NA	NA	NA	NA	NA
AXD50405.1|1175966_1176845_-	NAD(+) kinase	NA	NA	NA	NA	NA
AXD50404.1|1176968_1177559_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AXD47051.1|1177593_1178199_-	cytoplasmic protein	NA	NA	NA	NA	NA
AXD47052.1|1178319_1179561_-	DUF21 domain-containing protein	NA	NA	NA	NA	NA
AXD47053.1|1179625_1180417_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
AXD47054.1|1180362_1180659_-	hypothetical protein	NA	NA	NA	NA	NA
AXD47055.1|1180582_1181944_+	signal recognition particle protein	NA	NA	NA	NA	NA
AXD47056.1|1182196_1182445_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AXD47057.1|1182463_1183012_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AXD47058.1|1183056_1183824_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
>prophage 2
CP030207	Salmonella enterica strain SA19992307 chromosome, complete genome	4844554	1446930	1452966	4844554		Salmonella_virus(50.0%)	6	NA	NA
AXD47273.1|1446930_1447161_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	68.6	5.4e-08
AXD47274.1|1447099_1447243_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	82.9	1.7e-12
AXD47275.1|1449706_1450150_-	hypothetical protein	NA	A0A1R3Y5Q6	Salmonella_virus	88.4	6.4e-42
AXD47276.1|1450151_1450424_-	bactoprenol glucosyl transferase	NA	A8CG95	Salmonella_phage	79.5	3.3e-25
AXD50413.1|1450392_1450782_-	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	85.6	1.1e-50
AXD47277.1|1452024_1452966_-	hypothetical protein	NA	E7DYY8	Enterobacteria_phage	87.8	1.6e-146
>prophage 3
CP030207	Salmonella enterica strain SA19992307 chromosome, complete genome	4844554	1689521	1698692	4844554	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AXD47496.1|1689521_1690469_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
AXD47497.1|1690452_1691184_+	ABC transporter permease	NA	NA	NA	NA	NA
AXD47498.1|1691164_1691272_-	hypothetical protein	NA	NA	NA	NA	NA
AXD47499.1|1691331_1692063_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.4	2.2e-100
AXD47500.1|1692285_1693971_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
AXD47501.1|1693967_1694687_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXD47502.1|1694733_1695201_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	89.7	8.8e-74
AXD47503.1|1695257_1695788_-	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
AXD47504.1|1695959_1696418_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	71.2	7.1e-52
AXD47505.1|1696658_1698692_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 4
CP030207	Salmonella enterica strain SA19992307 chromosome, complete genome	4844554	1765889	1776396	4844554		Enterobacteria_phage(37.5%)	10	NA	NA
AXD47557.1|1765889_1767293_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	4.0e-21
AXD47558.1|1767470_1768364_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AXD47559.1|1768740_1769826_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
AXD47560.1|1769825_1770725_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
AXD50423.1|1770772_1771651_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	2.1e-108
AXD47561.1|1771651_1772203_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.3e-52
AXD47562.1|1772208_1773183_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AXD47563.1|1773198_1773972_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AXD47564.1|1773976_1775056_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.3e-16
AXD47565.1|1775082_1776396_+	LPS biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 5
CP030207	Salmonella enterica strain SA19992307 chromosome, complete genome	4844554	1889304	1935516	4844554	terminase,capsid,tail,plate,transposase,holin,portal,integrase,head	Salmonella_phage(86.54%)	63	1887281:1887295	1907596:1907610
1887281:1887295	attL	TTATCAATGACATCT	NA	NA	NA	NA
AXD50431.1|1889304_1890579_-	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	40.1	8.2e-74
AXD47667.1|1890934_1891732_-	protein MtfA	NA	NA	NA	NA	NA
AXD47668.1|1892023_1893013_-|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	100.0	8.6e-196
AXD47669.1|1893014_1893257_-	DUF4224 domain-containing protein	NA	Q8HAA9	Salmonella_phage	100.0	9.5e-40
AXD47670.1|1893281_1893851_-	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	91.0	5.8e-104
AXD47671.1|1893847_1894597_-	hypothetical protein	NA	H6WRY2	Salmonella_phage	83.6	1.1e-46
AXD47672.1|1894600_1895074_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.3	5.0e-69
AXD47673.1|1895073_1895811_-	ead/Ea22-like family protein	NA	A0A0M5M1J9	Salmonella_phage	86.3	1.8e-52
AXD47674.1|1895881_1896421_-	HD family hydrolase	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
AXD47675.1|1896557_1897385_-	DUF2303 family protein	NA	Q8HAA2	Salmonella_phage	97.8	7.1e-151
AXD47676.1|1897442_1897814_-	hypothetical protein	NA	Q8HAA1	Salmonella_phage	100.0	1.1e-63
AXD47677.1|1898350_1898596_+	hypothetical protein	NA	NA	NA	NA	NA
AXD47678.1|1898513_1898810_-	hypothetical protein	NA	Q8SBF7	Shigella_phage	98.0	1.1e-50
AXD47679.1|1898790_1899042_-	hypothetical protein	NA	NA	NA	NA	NA
AXD47680.1|1898969_1899155_-	hypothetical protein	NA	A0A1C9II97	Salmonella_phage	73.3	1.2e-13
AXD47681.1|1899359_1900055_-	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	99.1	3.0e-126
AXD47682.1|1900028_1900214_+	amino acid permease	NA	NA	NA	NA	NA
AXD47683.1|1900152_1900377_+	XRE family transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
AXD47684.1|1900405_1900960_+	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	99.5	5.9e-101
AXD47685.1|1900956_1902099_+	peptidase	NA	A0A1C9IHV9	Salmonella_phage	87.4	4.8e-182
AXD47686.1|1902095_1902320_+	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
AXD47687.1|1902316_1903291_+	hypothetical protein	NA	A0A1C9IHW0	Salmonella_phage	98.1	1.2e-165
AXD47688.1|1903287_1903761_+	PerC family transcriptional regulator	NA	A0A1C9IHW0	Salmonella_phage	93.8	6.6e-53
AXD47689.1|1903757_1904639_+	DNA methylase	NA	A0A1C9II58	Salmonella_phage	99.3	1.1e-170
AXD47690.1|1904647_1905037_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A1C9IIA0	Salmonella_phage	100.0	4.9e-70
AXD47691.1|1905008_1905914_+	KilA-N domain-containing protein	NA	Q8HA92	Salmonella_phage	99.0	2.8e-161
AXD50432.1|1905921_1906911_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.0	3.0e-188
AXD47692.1|1906924_1907677_+	antitermination protein	NA	A0A192Y5X6	Salmonella_phage	92.0	2.4e-134
1907596:1907610	attR	AGATGTCATTGATAA	NA	NA	NA	NA
AXD47693.1|1907708_1907897_+	hypothetical protein	NA	NA	NA	NA	NA
AXD47694.1|1907965_1908208_+	hypothetical protein	NA	NA	NA	NA	NA
AXD47695.1|1908339_1908693_+|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	88.7	1.0e-50
AXD47696.1|1908696_1909173_+	lysozyme	NA	Q8SBE0	Shigella_phage	96.8	1.7e-85
AXD47697.1|1909156_1909549_+	DUF2570 domain-containing protein	NA	Q8SBD9	Shigella_phage	92.3	1.6e-57
AXD47698.1|1910074_1910509_+	hypothetical protein	NA	NA	NA	NA	NA
AXD47699.1|1910636_1910987_+	HNH endonuclease	NA	M1FQV2	Enterobacteria_phage	97.4	8.0e-64
AXD47700.1|1911104_1911608_+|terminase	phage terminase small subunit P27 family	terminase	Q8HAD7	Salmonella_phage	100.0	3.6e-89
AXD47701.1|1911604_1913338_+|terminase	terminase large subunit	terminase	Q8HAD6	Salmonella_phage	99.8	0.0e+00
AXD47702.1|1913349_1913532_+	hypothetical protein	NA	Q8HAD5	Salmonella_phage	100.0	1.0e-25
AXD47703.1|1913531_1914773_+|portal	phage portal protein	portal	Q8HAD4	Salmonella_phage	99.3	3.8e-241
AXD47704.1|1915415_1916621_+|capsid	phage major capsid protein	capsid	Q8HAD2	Salmonella_phage	100.0	1.6e-223
AXD47705.1|1916671_1916872_+	hypothetical protein	NA	Q8HAD1	Salmonella_phage	100.0	1.4e-28
AXD47706.1|1916874_1917198_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A192Y8J4	Salmonella_phage	100.0	6.3e-55
AXD47707.1|1917194_1917599_+|head,tail	head-tail adaptor protein	head,tail	A0A192Y6C2	Salmonella_phage	99.3	5.4e-72
AXD47708.1|1917570_1918083_+	hypothetical protein	NA	Q8HAC8	Salmonella_phage	100.0	4.6e-92
AXD47709.1|1918079_1918640_+	hypothetical protein	NA	Q8HAC7	Salmonella_phage	99.5	8.8e-105
AXD47710.1|1918643_1918808_+	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	100.0	1.0e-24
AXD47711.1|1918797_1920294_+|tail	phage tail protein	tail	Q8HAC5	Salmonella_phage	99.8	6.1e-278
AXD47712.1|1920293_1920650_+|tail	phage tail protein	tail	A0A192Y8K0	Salmonella_phage	100.0	2.6e-62
AXD47713.1|1920646_1920973_+|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	99.1	2.3e-52
AXD47714.1|1921057_1922986_+|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	99.7	0.0e+00
AXD47715.1|1923019_1924360_+	DNA circularization protein	NA	A0A192Y5U9	Salmonella_phage	99.6	5.7e-251
AXD47716.1|1924356_1925421_+|plate	baseplate protein	plate	Q8HAC0	Salmonella_phage	95.1	4.2e-188
AXD47717.1|1925413_1925947_+|plate	phage baseplate assembly protein V	plate	Q8HAB9	Salmonella_phage	100.0	1.4e-96
AXD47718.1|1925951_1926365_+	hypothetical protein	NA	Q8HAB8	Salmonella_phage	100.0	1.1e-75
AXD47719.1|1926357_1927437_+|plate	phage baseplate protein	plate	A0A192Y6E4	Salmonella_phage	99.7	2.5e-204
AXD47720.1|1927439_1928027_+	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	100.0	2.9e-114
AXD47721.1|1929575_1930145_+|tail	tail fiber assembly protein	tail	Q8HAB3	Salmonella_phage	100.0	7.3e-107
AXD47722.1|1930429_1931437_-	type III secretion system effector arginine glycosyltransferase	NA	Q8HAB2	Salmonella_phage	100.0	7.9e-197
AXD47723.1|1931649_1931871_+	DNA-binding protein	NA	Q8HAB1	Salmonella_phage	100.0	1.2e-36
AXD47724.1|1932234_1932417_+	hypothetical protein	NA	NA	NA	NA	NA
AXD47725.1|1932809_1933187_+	hypothetical protein	NA	NA	NA	NA	NA
AXD47726.1|1933213_1934032_+	hypothetical protein	NA	NA	NA	NA	NA
AXD47727.1|1934493_1935516_+|transposase	IS110-like element ISSaen1 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP030207	Salmonella enterica strain SA19992307 chromosome, complete genome	4844554	2628332	2726859	4844554	tRNA,terminase,tail,protease,holin,portal,integrase,lysis	Enterobacteria_phage(24.49%)	104	2703225:2703239	2728628:2728642
AXD48394.1|2628332_2629028_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
AXD48395.1|2629085_2630996_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	32.7	4.5e-92
AXD48396.1|2631126_2631471_+	RidA family protein	NA	NA	NA	NA	NA
AXD48397.1|2631476_2631656_-	YoaH family protein	NA	NA	NA	NA	NA
AXD48398.1|2631736_2633101_+	aminodeoxychorismate synthase component 1	NA	A0A0B5J984	Pandoravirus	34.5	3.6e-43
AXD48399.1|2633104_2633683_+	coenzyme A pyrophosphatase	NA	NA	NA	NA	NA
AXD48400.1|2633946_2635311_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
AXD48401.1|2635448_2637050_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AXD48402.1|2637071_2638631_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	44.4	9.5e-40
AXD48403.1|2638618_2638954_-	hypothetical protein	NA	NA	NA	NA	NA
AXD48404.1|2639103_2640072_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA	NA
AXD48405.1|2640124_2640925_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA	NA
AXD48406.1|2640937_2641789_+	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
AXD48407.1|2641847_2642306_+	DUF986 domain-containing protein	NA	NA	NA	NA	NA
AXD50464.1|2642661_2643282_+	manganese efflux pump MntP	NA	NA	NA	NA	NA
AXD48408.1|2643278_2644088_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA	NA
AXD48409.1|2644153_2645899_-	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA	NA
AXD48410.1|2646118_2646328_-	cold-shock protein CspC	NA	A0A1W6JNX5	Morganella_phage	78.1	1.6e-22
AXD48411.1|2646340_2646484_-	DUF2627 domain-containing protein	NA	NA	NA	NA	NA
AXD48412.1|2647132_2647420_-	hypothetical protein	NA	NA	NA	NA	NA
AXD48413.1|2647490_2647634_-	PhoP/PhoQ regulator MgrB	NA	NA	NA	NA	NA
AXD48414.1|2647791_2648031_+	hypothetical protein	NA	NA	NA	NA	NA
AXD48415.1|2648242_2649034_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA	NA
AXD48416.1|2649209_2650583_+	MFS transporter	NA	NA	NA	NA	NA
AXD48417.1|2650630_2651512_-|protease	protease HtpX	protease	NA	NA	NA	NA
AXD48418.1|2651704_2653753_-|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
AXD48419.1|2653772_2654459_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
AXD48420.1|2654556_2655141_-	GAF domain-containing protein	NA	NA	NA	NA	NA
AXD48421.1|2655182_2656466_+	paraquat-inducible protein A	NA	NA	NA	NA	NA
AXD48422.1|2656428_2659068_+	MCE family protein	NA	NA	NA	NA	NA
AXD50465.1|2659145_2660585_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
AXD48423.1|2660699_2660939_+	DUF1480 family protein	NA	NA	NA	NA	NA
AXD48424.1|2661049_2661241_+	DUF1482 family protein	NA	NA	NA	NA	NA
AXD48425.1|2661259_2661910_-	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	50.9	7.2e-58
AXD48426.1|2662133_2662298_-	hypothetical protein	NA	NA	NA	NA	NA
AXD48427.1|2662582_2663305_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
AXD48428.1|2664709_2665186_+	hypothetical protein	NA	NA	NA	NA	NA
AXD48429.1|2665558_2665978_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXD48430.1|2666106_2666301_-	hypothetical protein	NA	NA	NA	NA	NA
AXD48431.1|2666347_2666617_+	hypothetical protein	NA	Q6UAV5	Klebsiella_phage	39.0	1.5e-06
AXD48432.1|2666782_2666923_+	hypothetical protein	NA	NA	NA	NA	NA
AXD50466.1|2669232_2669433_-	hypothetical protein	NA	NA	NA	NA	NA
AXD48433.1|2671099_2671258_+	hypothetical protein	NA	NA	NA	NA	NA
AXD48434.1|2671267_2671882_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
AXD48435.1|2672634_2672901_-	hypothetical protein	NA	NA	NA	NA	NA
AXD48436.1|2673029_2673155_-	arsenic transporter	NA	NA	NA	NA	NA
AXD48437.1|2673416_2673521_+|tail	phage tail protein	tail	NA	NA	NA	NA
AXD48438.1|2673722_2673923_+	phage virulence factor	NA	NA	NA	NA	NA
AXD48439.1|2675376_2675568_+	hypothetical protein	NA	NA	NA	NA	NA
AXD48440.1|2675632_2675800_+	lytic enzyme	NA	NA	NA	NA	NA
AXD48441.1|2676056_2676590_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	43.0	3.2e-11
AXD50467.1|2676586_2676874_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.9	1.6e-38
AXD48442.1|2681318_2682041_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
AXD48443.1|2682242_2682812_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	90.5	3.4e-96
AXD48444.1|2682811_2685229_-|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	62.8	4.7e-86
AXD48445.1|2685282_2685525_-	hypothetical protein	NA	NA	NA	NA	NA
AXD48446.1|2685563_2686427_-	DUF1983 domain-containing protein	NA	K7PKJ2	Enterobacteria_phage	78.9	9.0e-48
AXD48447.1|2688987_2689692_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	63.1	2.4e-67
AXD48448.1|2689595_2690327_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	75.6	1.0e-113
AXD48449.1|2690336_2691032_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.0e-89
AXD48450.1|2691121_2691655_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
AXD48451.1|2691771_2692269_-	Ail/OmpX	NA	A0A1B0VBR9	Salmonella_phage	35.9	1.4e-16
AXD48452.1|2692367_2692700_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	2.6e-35
AXD50468.1|2692696_2695684_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.1	2.8e-266
AXD48453.1|2695763_2696093_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
AXD48454.1|2696089_2696488_-|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
AXD48455.1|2696533_2697283_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	4.8e-90
AXD48456.1|2697294_2697696_-|tail	phage tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	2.0e-42
AXD48457.1|2697692_2698259_-|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	95.7	2.1e-13
AXD48458.1|2698239_2698539_-	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
AXD48459.1|2698531_2698855_-	DUF2190 family protein	NA	K7PLV6	Enterobacteria_phage	61.3	7.7e-29
AXD50470.1|2698945_2701027_-|protease	Clp protease ClpP	protease	A0A291AWT6	Escherichia_phage	69.5	4.8e-265
AXD50469.1|2700950_2702468_-|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	64.7	4.9e-174
AXD48460.1|2702494_2702701_-	primosomal replication protein PriB/PriC domain protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
AXD48461.1|2702697_2704836_-|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	72.6	3.4e-290
2703225:2703239	attL	AAACGCGCCCGGCAA	NA	NA	NA	NA
AXD48462.1|2704792_2705326_-	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
AXD50472.1|2705533_2706013_-|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
AXD48463.1|2706030_2706483_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
AXD50471.1|2706466_2706796_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
AXD48464.1|2707071_2707758_+|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	99.6	1.8e-131
AXD48465.1|2708118_2708568_+	hypothetical protein	NA	NA	NA	NA	NA
AXD50473.1|2708941_2709466_-	hypothetical protein	NA	NA	NA	NA	NA
AXD48466.1|2709562_2710252_-	antiterminator	NA	I6PDF8	Cronobacter_phage	54.9	2.1e-60
AXD48467.1|2710381_2710609_-	DNA breaking-rejoining protein	NA	A0A0M4RU10	Salmonella_phage	66.7	2.2e-14
AXD48468.1|2710605_2711205_-	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	82.9	4.7e-96
AXD48469.1|2711268_2711574_-	hypothetical protein	NA	NA	NA	NA	NA
AXD48470.1|2711996_2712188_+	hypothetical protein	NA	NA	NA	NA	NA
AXD48471.1|2712205_2714185_-	MBL fold metallo-hydrolase	NA	A0A2P0VMX1	Tetraselmis_virus	46.3	1.9e-162
AXD48472.1|2715999_2716395_-	DUF977 family protein	NA	A0A088CBK9	Shigella_phage	38.8	9.8e-18
AXD48473.1|2716407_2716869_-	replication protein	NA	A0A0U2JGJ0	Escherichia_phage	75.5	3.5e-67
AXD48474.1|2716861_2717860_-	DUF1376 domain-containing protein	NA	A0A0U2RT81	Escherichia_phage	67.3	4.1e-121
AXD48475.1|2717906_2718401_-	hypothetical protein	NA	NA	NA	NA	NA
AXD48476.1|2718387_2718642_-	XRE family transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	60.9	5.3e-17
AXD48477.1|2718740_2719139_+	helix-turn-helix domain-containing protein	NA	K7PH19	Enterobacteria_phage	56.0	1.2e-18
AXD48478.1|2719541_2719808_+	hypothetical protein	NA	NA	NA	NA	NA
AXD48479.1|2720156_2720432_+	hypothetical protein	NA	NA	NA	NA	NA
AXD48480.1|2720435_2720642_+	cell division inhibitor protein	NA	I6PBM9	Cronobacter_phage	45.6	3.0e-10
AXD48481.1|2720717_2721053_+	hypothetical protein	NA	NA	NA	NA	NA
AXD48482.1|2721193_2723884_+	exodeoxyribonuclease VIII	NA	Q9QF34	Lambdoid_phage	72.8	4.0e-118
AXD48483.1|2723876_2724707_+	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	71.6	2.5e-103
AXD48484.1|2724753_2724939_+	DUF1187 family protein	NA	NA	NA	NA	NA
AXD50474.1|2725229_2725466_+	hypothetical protein	NA	NA	NA	NA	NA
AXD48485.1|2725526_2725805_+	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	37.5	1.8e-10
AXD48486.1|2725779_2726859_+|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.2	5.7e-100
2728628:2728642	attR	TTGCCGGGCGCGTTT	NA	NA	NA	NA
>prophage 7
CP030207	Salmonella enterica strain SA19992307 chromosome, complete genome	4844554	2828958	2838666	4844554		Burkholderia_phage(28.57%)	12	NA	NA
AXD48594.1|2828958_2830671_-	cellulose synthesis regulatory protein	NA	A0A127AWB9	Bacillus_phage	37.4	1.6e-19
AXD48595.1|2830835_2831081_-	DUF2158 domain-containing protein	NA	NA	NA	NA	NA
AXD48596.1|2831097_2832015_-	DUF808 domain-containing protein	NA	NA	NA	NA	NA
AXD48597.1|2832184_2833105_+	drug/metabolite exporter YedA	NA	NA	NA	NA	NA
AXD48598.1|2833093_2833564_-	very short patch repair endonuclease	NA	E5E3X5	Burkholderia_phage	46.9	1.2e-30
AXD48599.1|2833544_2834975_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	7.8e-105
AXD48600.1|2835048_2835744_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
AXD48601.1|2835823_2836135_-	hypothetical protein	NA	NA	NA	NA	NA
AXD48602.1|2836784_2837342_+	porin	NA	Q1MVN1	Enterobacteria_phage	68.4	2.0e-64
AXD48603.1|2837597_2837996_+	hypothetical protein	NA	Q1MVN1	Enterobacteria_phage	55.0	2.7e-31
AXD50480.1|2838254_2838443_-	cold-shock protein	NA	NA	NA	NA	NA
AXD48604.1|2838453_2838666_-	cold-shock protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
>prophage 8
CP030207	Salmonella enterica strain SA19992307 chromosome, complete genome	4844554	2923588	2967548	4844554	protease,tail	Escherichia_phage(35.71%)	42	NA	NA
AXD48686.1|2923588_2924269_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	72.4	1.6e-84
AXD48687.1|2924907_2925567_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
AXD48688.1|2925653_2925983_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
AXD48689.1|2925979_2926261_-	acylphosphatase	NA	NA	NA	NA	NA
AXD48690.1|2926309_2927089_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXD48691.1|2927114_2927663_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
AXD48692.1|2927877_2929089_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA	NA
AXD48693.1|2929146_2929464_+	heat-shock protein HspQ	NA	NA	NA	NA	NA
AXD48694.1|2929508_2929925_-	CoA-binding protein	NA	NA	NA	NA	NA
AXD48695.1|2930095_2930758_+	DUF2057 family protein	NA	NA	NA	NA	NA
AXD48696.1|2930852_2931311_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AXD48697.1|2931346_2933401_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
AXD48698.1|2933524_2933971_+	YccF domain-containing protein	NA	NA	NA	NA	NA
AXD48699.1|2933989_2936143_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
AXD48700.1|2936129_2936735_-	DNA transformation protein	NA	NA	NA	NA	NA
AXD48701.1|2936951_2937461_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
AXD50483.1|2937817_2938870_+	outer membrane protein A	NA	NA	NA	NA	NA
AXD48702.1|2938941_2939394_-	macrodomain Ter protein	NA	NA	NA	NA	NA
AXD48703.1|2939579_2941340_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
AXD48704.1|2941408_2941927_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
AXD48705.1|2942026_2942194_-	ribosome modulation factor	NA	NA	NA	NA	NA
AXD48706.1|2942449_2943013_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
AXD48707.1|2943009_2944650_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
AXD48708.1|2944654_2945908_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
AXD48709.1|2945922_2947830_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
AXD48710.1|2947842_2949951_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA	NA
AXD48711.1|2950049_2951159_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AXD48712.1|2951155_2951698_-	cell division protein ZapC	NA	NA	NA	NA	NA
AXD48713.1|2951863_2952874_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AXD48714.1|2953081_2955694_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	6.3e-20
AXD48715.1|2956120_2956312_+	DinI family protein	NA	S4TNM0	Salmonella_phage	93.7	1.8e-25
AXD48716.1|2957624_2958251_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
AXD48717.1|2960093_2960342_+|tail	phage tail protein	tail	A0A1B0VCD0	Salmonella_phage	66.2	2.1e-18
AXD48718.1|2960345_2960927_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
AXD48719.1|2960926_2962636_-|tail	tail fiber protein	tail	A0A0U2SAV1	Escherichia_phage	66.0	1.5e-91
AXD48720.1|2962632_2963259_-	hypothetical protein	NA	A0A0U2RK03	Escherichia_phage	71.6	3.3e-92
AXD48721.1|2963242_2964469_-	hypothetical protein	NA	A0A0U2RJZ0	Escherichia_phage	63.6	3.2e-147
AXD48722.1|2964465_2964798_-	hypothetical protein	NA	NA	NA	NA	NA
AXD48723.1|2964794_2965511_-	hypothetical protein	NA	NA	NA	NA	NA
AXD48724.1|2965507_2966560_-	hypothetical protein	NA	NA	NA	NA	NA
AXD48725.1|2966559_2966835_-	hypothetical protein	NA	A0A0U2JGJ3	Escherichia_phage	33.3	1.6e-06
AXD48726.1|2967050_2967548_-	hypothetical protein	NA	A0A0U2JGI7	Escherichia_phage	38.0	8.9e-24
>prophage 9
CP030207	Salmonella enterica strain SA19992307 chromosome, complete genome	4844554	2974490	3000124	4844554	terminase,holin	Salmonella_phage(72.41%)	32	NA	NA
AXD48734.1|2974490_2975522_-	DUF2184 domain-containing protein	NA	A0A0U2QQI2	Escherichia_phage	45.2	2.5e-73
AXD48735.1|2975539_2976412_-	hypothetical protein	NA	NA	NA	NA	NA
AXD48736.1|2976432_2978007_-	NUDIX hydrolase	NA	Q6UJ14	Burkholderia_virus	48.6	2.2e-20
AXD48737.1|2978007_2978883_-	hypothetical protein	NA	A0A0U2I1R8	Escherichia_phage	45.5	1.5e-55
AXD48738.1|2978854_2980285_-	DUF1073 domain-containing protein	NA	A0A0U2S5X9	Escherichia_phage	37.9	2.6e-92
AXD48739.1|2980284_2981556_-	hypothetical protein	NA	A0A0U2JTW9	Escherichia_phage	38.3	1.1e-83
AXD48740.1|2981545_2982520_-|terminase	terminase small subunit	terminase	C5IHM0	Burkholderia_virus	37.3	1.6e-29
AXD48741.1|2982581_2982995_-	hypothetical protein	NA	NA	NA	NA	NA
AXD48742.1|2982984_2983536_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AXD48743.1|2983532_2984147_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	94.1	1.2e-107
AXD48744.1|2984149_2984497_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	80.4	1.3e-45
AXD48745.1|2984895_2985693_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	4.4e-150
AXD48746.1|2985682_2985829_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
AXD48747.1|2985825_2986437_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	98.0	1.3e-90
AXD48748.1|2986439_2986646_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
AXD48749.1|2986645_2987248_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
AXD48750.1|2987287_2987593_-	hypothetical protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
AXD48751.1|2987582_2987822_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
AXD48752.1|2987977_2988244_-	hypothetical protein	NA	S4TNF2	Salmonella_phage	100.0	1.5e-46
AXD48753.1|2988337_2988910_-	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
AXD48754.1|2988913_2989387_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	79.5	4.7e-67
AXD48755.1|2989386_2989911_-	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
AXD48756.1|2989907_2990255_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
AXD48757.1|2990265_2991015_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
AXD48758.1|2991017_2992001_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
AXD48759.1|2992085_2992460_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
AXD48760.1|2992425_2992662_-	Cro/Cl family transcriptional regulator	NA	H6WRX5	Salmonella_phage	100.0	1.8e-38
AXD48761.1|2992791_2993196_+	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
AXD48762.1|2993905_2997094_+	DNA breaking-rejoining protein	NA	S4TNL0	Salmonella_phage	74.0	0.0e+00
AXD48763.1|2998258_2998498_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
AXD48764.1|2998538_2998787_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
AXD48765.1|2998831_3000124_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	1.3e-252
>prophage 10
CP030207	Salmonella enterica strain SA19992307 chromosome, complete genome	4844554	3071093	3078406	4844554	integrase,protease	Ralstonia_phage(16.67%)	7	3066149:3066163	3077142:3077156
3066149:3066163	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
AXD48817.1|3071093_3071471_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
AXD48818.1|3071632_3071830_+	hypothetical protein	NA	NA	NA	NA	NA
AXD48819.1|3072042_3074319_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
AXD48820.1|3074349_3074670_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AXD48821.1|3074993_3075215_+	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AXD48822.1|3075344_3077291_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	41.9	2.0e-39
3077142:3077156	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
AXD48823.1|3077287_3078406_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	8.1e-09
>prophage 11
CP030207	Salmonella enterica strain SA19992307 chromosome, complete genome	4844554	3420418	3461650	4844554	terminase,tail,coat,protease,holin,portal,integrase,lysis	Salmonella_phage(68.85%)	62	3415691:3415731	3461668:3461708
3415691:3415731	attL	GCGCGCCCTGCAGGATTCGAACCTGCGACCCACGGCTTAGA	NA	NA	NA	NA
AXD49116.1|3420418_3420781_+	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	100.0	5.0e-61
AXD49117.1|3423213_3425217_-	endorhamnosidase	NA	E7C9U9	Salmonella_phage	99.9	0.0e+00
AXD49118.1|3425352_3425604_+	Arc family DNA-binding protein	NA	E7C9U8	Salmonella_phage	100.0	1.4e-38
AXD50506.1|3425703_3425883_+	hypothetical protein	NA	B8K1I9	Salmonella_phage	100.0	2.1e-28
AXD49119.1|3425896_3426262_-	hypothetical protein	NA	E7C9U7	Salmonella_phage	100.0	8.1e-67
AXD49120.1|3426292_3426622_+	hypothetical protein	NA	NA	NA	NA	NA
AXD49121.1|3426639_3428553_-	DNA transfer protein	NA	E7C9U6	Salmonella_phage	100.0	0.0e+00
AXD49122.1|3428552_3429857_-	acyltransferase	NA	E7C9U5	Salmonella_phage	96.3	7.8e-213
AXD49123.1|3429867_3430557_-	DNA transfer protein	NA	E7C9U4	Salmonella_phage	99.6	1.2e-108
AXD49124.1|3430559_3431015_-	DUF2824 family protein	NA	B8K1I4	Salmonella_phage	100.0	1.4e-87
AXD49125.1|3431014_3431716_-|tail	phage tail protein	tail	B8K1I3	Salmonella_phage	98.3	8.8e-70
AXD49126.1|3431719_3433138_-	hypothetical protein	NA	I1TEJ1	Salmonella_phage	98.1	9.6e-273
AXD49127.1|3433097_3433598_-	hypothetical protein	NA	I1TEJ0	Salmonella_phage	98.8	5.5e-90
AXD49128.1|3433581_3434142_-	hypothetical protein	NA	C6ZR11	Salmonella_phage	98.9	1.4e-102
AXD49129.1|3434182_3435475_-|coat	coat protein	coat	C6ZR10	Salmonella_phage	99.8	1.1e-243
AXD49130.1|3435474_3436386_-	scaffolding protein	NA	A0A1R3Y5R6	Salmonella_virus	100.0	4.9e-161
AXD49131.1|3436399_3438577_-|portal	portal protein	portal	I6R968	Salmonella_phage	98.3	0.0e+00
AXD49132.1|3438576_3440076_-|terminase	terminase	terminase	A8CGE0	Salmonella_phage	99.8	6.9e-306
AXD49133.1|3440544_3440949_-	Decoration protein	NA	C6ZR73	Salmonella_phage	100.0	5.3e-67
AXD49134.1|3440948_3441338_-	hypothetical protein	NA	C6ZR72	Salmonella_phage	99.2	1.5e-74
AXD49135.1|3441341_3441584_-	DUF2560 family protein	NA	A5VW77	Enterobacteria_phage	100.0	1.3e-36
AXD49136.1|3441842_3442373_-	KilA-N domain-containing protein	NA	A0A2H4FQV0	Salmonella_phage	96.6	4.0e-91
AXD49137.1|3442326_3442551_-	hypothetical protein	NA	A0A1V0E5I0	Salmonella_phage	90.3	7.2e-26
AXD49138.1|3442585_3443056_-|lysis	lysis protein	lysis	H6WRZ5	Salmonella_phage	87.2	1.2e-62
AXD49139.1|3443052_3443490_-	lysozyme	NA	Q5G8R3	Enterobacteria_phage	97.9	6.3e-74
AXD49140.1|3443473_3443800_-|holin	phage holin, lambda family	holin	Q5G8R5	Enterobacteria_phage	100.0	1.7e-52
AXD49141.1|3443935_3444133_-	hypothetical protein	NA	C6ZR63	Salmonella_phage	96.2	5.0e-23
AXD49142.1|3444179_3444668_-	DUF1133 family protein	NA	I6S672	Salmonella_phage	87.0	3.0e-77
AXD49143.1|3444737_3444941_-	protein ninH	NA	A0A075B8J4	Enterobacteria_phage	94.0	5.7e-30
AXD49144.1|3444937_3445333_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0M4REJ2	Salmonella_phage	96.9	2.9e-70
AXD49145.1|3445329_3445626_-	hypothetical protein	NA	A0A0M3ULJ7	Salmonella_phage	98.9	7.5e-47
AXD49146.1|3445588_3445765_-	NinF family protein	NA	A0A0M4S6T3	Salmonella_phage	96.6	1.8e-27
AXD49147.1|3445761_3445944_-	NinE family protein	NA	Q716C5	Shigella_phage	96.7	1.8e-27
AXD49148.1|3445910_3446084_-	protein ninD	NA	C6ZR56	Salmonella_phage	93.0	7.0e-29
AXD49149.1|3446080_3446953_-	hypothetical protein	NA	I6R0S6	Salmonella_phage	93.4	6.1e-169
AXD49150.1|3446949_3447408_-	recombination protein NinB	NA	K7PKW7	Enterobacterial_phage	98.6	3.0e-79
AXD49151.1|3447463_3448840_-	replicative DNA helicase	NA	A0A192Y673	Salmonella_phage	99.3	4.8e-253
AXD49152.1|3449648_3449795_-	DUF2740 domain-containing protein	NA	A0A075B8K7	Enterobacteria_phage	100.0	1.5e-19
AXD49153.1|3449829_3450111_-	hypothetical protein	NA	Q76H54	Enterobacteria_phage	100.0	4.3e-44
AXD49154.1|3450221_3450437_-	transcriptional regulator	NA	Q76H55	Enterobacteria_phage	100.0	1.3e-32
AXD49155.1|3450547_3451237_+	helix-turn-helix transcriptional regulator	NA	Q76H56	Enterobacteria_phage	100.0	1.3e-126
AXD49156.1|3451325_3452249_+	hypothetical protein	NA	A0A1R3Y6Z6	Salmonella_virus	99.7	5.6e-181
AXD49157.1|3452284_3452494_-	fumarate hydratase FumD	NA	I6R0R9	Salmonella_phage	91.3	5.5e-28
AXD49158.1|3452857_3453190_+	hypothetical protein	NA	A0A1R3Y5R1	Salmonella_virus	100.0	2.2e-55
AXD49159.1|3453268_3453469_+	restriction endonuclease	NA	A0A1R3Y5S4	Salmonella_virus	100.0	1.0e-31
AXD49160.1|3453508_3453808_+	hypothetical protein	NA	A0A1R3Y5U4	Salmonella_virus	99.0	3.3e-50
AXD49161.1|3454131_3454272_+|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q776Q5	Enterobacteria_phage	84.8	2.0e-18
AXD49162.1|3454264_3454378_+	host cell division inhibitory peptide Kil	NA	C6ZR39	Salmonella_phage	100.0	7.8e-13
AXD49163.1|3454374_3454563_+	hypothetical protein	NA	C6ZR38	Salmonella_phage	100.0	1.3e-28
AXD49164.1|3454571_3455279_+	recombinase	NA	E7C9Q0	Salmonella_phage	89.8	9.7e-125
AXD49165.1|3455279_3455786_+	single-stranded DNA-binding protein	NA	C6ZR36	Salmonella_phage	98.8	3.8e-91
AXD49166.1|3455794_3456343_+	3'-5' exoribonuclease	NA	C6ZR35	Salmonella_phage	99.5	1.3e-105
AXD49167.1|3456358_3456652_+	DUF2856 family protein	NA	A0A1V0E5L7	Salmonella_phage	100.0	5.5e-50
AXD49168.1|3456662_3456833_+	DUF2737 family protein	NA	I6S642	Salmonella_phage	100.0	6.1e-25
AXD49169.1|3456829_3457411_+	Eae-like protein	NA	A0A0N6WGF1	Salmonella_phage	71.5	5.2e-68
AXD49170.1|3457795_3458089_+	hypothetical protein	NA	A0A1V0E5L2	Salmonella_phage	99.0	4.2e-50
AXD49171.1|3458085_3459168_+	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	75.2	6.5e-80
AXD49172.1|3459112_3459442_+	ASCH domain-containing protein	NA	Q9XJG9	Enterobacteria_phage	94.2	1.0e-52
AXD49173.1|3459523_3459835_+	hypothetical protein	NA	A0A1I9LJL8	Stx_converting_phage	99.0	7.9e-55
AXD50507.1|3459912_3460257_+	hypothetical protein	NA	A0A0P0ZB93	Stx2-converting_phage	97.4	1.1e-57
AXD49174.1|3460259_3460631_+	DNA-binding protein	NA	B9UDM0	Salmonella_phage	80.5	2.1e-46
AXD49175.1|3460486_3461650_+|integrase	site-specific integrase	integrase	A0A0M4R586	Salmonella_phage	97.1	1.0e-219
3461668:3461708	attR	GCGCGCCCTGCAGGATTCGAACCTGCGACCCACGGCTTAGA	NA	NA	NA	NA
>prophage 1
CP030208	Salmonella enterica strain SA19992307 plasmid pSA19992307.1, complete sequence	74577	14471	45444	74577	integrase,transposase,coat	Escherichia_phage(22.22%)	41	11097:11111	27331:27345
11097:11111	attL	CGGTTTTACCGCTTC	NA	NA	NA	NA
AXD50585.1|14471_15254_+|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	91.1	1.6e-51
AXD50586.1|15262_15976_+	EAL domain-containing protein	NA	NA	NA	NA	NA
AXD50587.1|15979_16489_+	CaiF/GrlA family transcriptional regulator	NA	NA	NA	NA	NA
AXD50588.1|17030_17591_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AXD50589.1|17657_18026_-|transposase	transposase	transposase	A0A077SLN2	Escherichia_phage	74.8	7.0e-42
AXD50590.1|18082_18508_+|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	50.4	3.4e-24
AXD50591.1|18634_19285_-	SPI-2 type III secretion system effector cysteine hydrolase SpvD	NA	NA	NA	NA	NA
AXD50592.1|19545_20271_-	type III secretion system effector phosphothreonine lyase SpvC	NA	NA	NA	NA	NA
AXD50593.1|20550_22338_-	SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB	NA	NA	NA	NA	NA
AXD50594.1|22519_23287_-	Virulence protein SpvA	NA	NA	NA	NA	NA
AXD50595.1|23460_23625_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	63.0	3.3e-12
AXD50596.1|23798_24692_-	virulence genes transcriptional activator SpvR	NA	NA	NA	NA	NA
AXD50597.1|25298_26336_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AXD50598.1|26524_27550_-	AAA family ATPase	NA	NA	NA	NA	NA
27331:27345	attR	CGGTTTTACCGCTTC	NA	NA	NA	NA
AXD50599.1|27482_29147_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXD50600.1|29130_29691_-	recombinase family protein	NA	A0A1W5LU24	Ralstonia_phage	43.2	1.5e-32
AXD50601.1|29897_30638_-	carbonic anhydrase	NA	NA	NA	NA	NA
AXD50602.1|31292_31781_-	cytoplasmic protein	NA	NA	NA	NA	NA
AXD50603.1|32039_33155_+	hypothetical protein	NA	NA	NA	NA	NA
AXD50649.1|33240_33657_+	hypothetical protein	NA	O64348	Escherichia_phage	42.9	8.2e-07
AXD50604.1|33840_34176_+	hypothetical protein	NA	NA	NA	NA	NA
AXD50605.1|34232_34799_+	DUF2913 family protein	NA	NA	NA	NA	NA
AXD50606.1|36165_36786_+	chromosome partitioning protein ParA	NA	A2I303	Vibrio_virus	33.8	6.3e-19
AXD50607.1|36837_37068_+	DNA partition complex ParG	NA	NA	NA	NA	NA
AXD50608.1|37302_37482_+	hypothetical protein	NA	NA	NA	NA	NA
AXD50650.1|37706_38060_-	DNA distortion polypeptide 3	NA	NA	NA	NA	NA
AXD50609.1|38196_38643_-	hypothetical protein	NA	NA	NA	NA	NA
AXD50610.1|38682_39519_-	replication initiation protein	NA	NA	NA	NA	NA
AXD50611.1|40557_40758_+	hypothetical protein	NA	NA	NA	NA	NA
AXD50612.1|40754_41006_+	plasmid stabilization protein	NA	NA	NA	NA	NA
AXD50613.1|40995_41277_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	62.4	3.8e-24
AXD50614.1|41422_41746_+	hypothetical protein	NA	A0A0K1LL53	Rhodobacter_phage	45.1	2.7e-13
AXD50615.1|41790_42036_+	hypothetical protein	NA	NA	NA	NA	NA
AXD50616.1|42025_42241_+	hypothetical protein	NA	NA	NA	NA	NA
AXD50617.1|42333_42663_+	hypothetical protein	NA	NA	NA	NA	NA
AXD50618.1|42705_42885_+	hypothetical protein	NA	NA	NA	NA	NA
AXD50619.1|42906_43104_+	hypothetical protein	NA	NA	NA	NA	NA
AXD50620.1|43116_43389_+	hypothetical protein	NA	NA	NA	NA	NA
AXD50621.1|43449_43599_+	hypothetical protein	NA	NA	NA	NA	NA
AXD50651.1|43714_44260_+	DNA distortion polypeptide 1	NA	NA	NA	NA	NA
AXD50622.1|44256_45444_+|coat	spore coat protein CotH	coat	NA	NA	NA	NA
