The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP030238	Salmonella enterica strain SA20055162 chromosome, complete genome	4640729	1603880	1612437	4640729	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
AXE03138.1|1603880_1604828_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	8.1e-10
AXE03139.1|1604811_1605543_+	ABC transporter permease	NA	NA	NA	NA	NA
AXE03140.1|1605523_1605631_-	hypothetical protein	NA	NA	NA	NA	NA
AXE03141.1|1605690_1606422_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	88.4	4.1e-102
AXE03142.1|1606644_1608330_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	90.7	3.8e-276
AXE03143.1|1608326_1609046_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXE03144.1|1609092_1609563_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	92.1	3.0e-74
AXE03145.1|1609704_1610163_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	74.5	1.2e-54
AXE03146.1|1610403_1612437_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	4.7e-55
>prophage 2
CP030238	Salmonella enterica strain SA20055162 chromosome, complete genome	4640729	1675258	1683502	4640729		Enterobacteria_phage(33.33%)	7	NA	NA
AXE03193.1|1675258_1676662_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	31.9	2.6e-20
AXE03194.1|1676838_1677732_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AXE03195.1|1678109_1679195_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.6	4.7e-102
AXE03196.1|1679194_1680094_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	1.0e-30
AXE03197.1|1680140_1681010_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	63.4	1.2e-105
AXE03198.1|1681156_1682392_+	flippase	NA	NA	NA	NA	NA
AXE03199.1|1682398_1683502_+	UDP-galactopyranose mutase	NA	E4ZFQ1	Streptococcus_phage	61.0	7.2e-135
>prophage 3
CP030238	Salmonella enterica strain SA20055162 chromosome, complete genome	4640729	1752101	1762213	4640729	tail	Salmonella_phage(44.44%)	13	NA	NA
AXE03250.1|1752101_1754183_-	DNA cytosine methyltransferase	NA	H9C171	Pectobacterium_phage	52.4	1.6e-196
AXE03251.1|1754179_1754437_-	hypothetical protein	NA	NA	NA	NA	NA
AXE03252.1|1754530_1754692_-	hypothetical protein	NA	A0A0U2QL97	Escherichia_phage	58.8	1.5e-09
AXE03253.1|1755143_1755968_+|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	89.4	3.3e-140
AXE03254.1|1755957_1756686_+	DUF4376 domain-containing protein	NA	A0A0M4RTP2	Salmonella_phage	72.7	6.8e-49
AXE03255.1|1756696_1757089_+|tail	phage tail protein	tail	A0A0A8J9K3	Ralstonia_phage	42.6	2.7e-15
AXE03256.1|1757072_1757183_+	hypothetical protein	NA	A0A0M4RTP2	Salmonella_phage	78.1	7.4e-08
AXE03257.1|1757285_1757501_-	hypothetical protein	NA	NA	NA	NA	NA
AXE03258.1|1758075_1758300_+	hypothetical protein	NA	S4TTF2	Salmonella_phage	86.8	1.1e-10
AXE03259.1|1758269_1759070_-	hypothetical protein	NA	NA	NA	NA	NA
AXE03260.1|1760353_1760566_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	8.7e-21
AXE05855.1|1760576_1760765_+	cold-shock protein	NA	NA	NA	NA	NA
AXE03261.1|1761034_1762213_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	57.2	1.1e-109
>prophage 4
CP030238	Salmonella enterica strain SA20055162 chromosome, complete genome	4640729	1873673	1926823	4640729	head,lysis,tail,integrase	Salmonella_phage(17.31%)	69	1910533:1910550	1927149:1927166
AXE03374.1|1873673_1873904_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
AXE03375.1|1874041_1874416_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
AXE03376.1|1874416_1875292_+	hypothetical protein	NA	NA	NA	NA	NA
AXE03377.1|1875308_1875659_+	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
AXE03378.1|1875719_1875839_+	hypothetical protein	NA	NA	NA	NA	NA
AXE03379.1|1876044_1877124_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.8	1.3e-101
AXE03380.1|1877098_1877377_-	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	37.5	5.3e-10
AXE05860.1|1877449_1877674_-	hypothetical protein	NA	NA	NA	NA	NA
AXE03381.1|1877964_1878150_-	DUF1187 family protein	NA	A0A0U2QL97	Escherichia_phage	59.6	2.9e-12
AXE03382.1|1878196_1879027_-	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	72.0	1.0e-104
AXE03383.1|1879019_1881710_-	exodeoxyribonuclease VIII	NA	Q9QF34	Lambdoid_phage	75.6	2.4e-115
AXE03384.1|1881850_1882186_-	hypothetical protein	NA	NA	NA	NA	NA
AXE03385.1|1882260_1882545_-	hypothetical protein	NA	K7PGY4	Enterobacteria_phage	53.2	1.7e-08
AXE03386.1|1882926_1883082_-	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	55.3	4.7e-08
AXE03387.1|1883392_1883818_-	helix-turn-helix domain-containing protein	NA	K7PH71	Enterobacterial_phage	56.3	9.3e-14
AXE03388.1|1883914_1884169_+	XRE family transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	60.9	5.3e-17
AXE03389.1|1884155_1884650_+	hypothetical protein	NA	NA	NA	NA	NA
AXE03390.1|1885073_1885310_-	hypothetical protein	NA	NA	NA	NA	NA
AXE03391.1|1885357_1885564_+	hypothetical protein	NA	A0A088CD36	Shigella_phage	58.0	3.1e-15
AXE03392.1|1885570_1886323_+	DNA replication protein DnaC	NA	A0A088CBP4	Shigella_phage	76.1	6.5e-103
AXE03393.1|1886340_1886736_+	DNA-binding protein	NA	A0A0U2QQN3	Escherichia_phage	37.0	9.8e-18
AXE03394.1|1886732_1887005_+	hypothetical protein	NA	NA	NA	NA	NA
AXE03395.1|1887208_1887364_+	protein hokC	NA	A0A0U2QV81	Escherichia_phage	82.4	3.4e-14
AXE03396.1|1887614_1887863_+	hypothetical protein	NA	NA	NA	NA	NA
AXE03397.1|1887926_1888526_+	hypothetical protein	NA	A0A0U2RT94	Escherichia_phage	84.4	4.5e-99
AXE03398.1|1888700_1889009_+	hypothetical protein	NA	K7P7Q1	Enterobacteria_phage	79.3	4.8e-36
AXE03399.1|1889018_1889381_+	antitermination protein	NA	Q777W5	Enterobacteria_phage	80.0	7.8e-54
AXE03400.1|1889492_1891928_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
AXE05862.1|1892675_1892978_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXE03401.1|1892955_1893495_+	lysozyme	NA	K7PLY1	Enterobacteria_phage	74.1	4.0e-78
AXE05861.1|1893812_1894268_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	76.5	9.8e-54
AXE03402.1|1894493_1894676_+	DUF826 domain-containing protein	NA	NA	NA	NA	NA
AXE03403.1|1894746_1895376_+	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	99.0	2.3e-109
AXE03404.1|1895378_1896998_+	TerL protein	NA	A0A0M5M1R6	Salmonella_phage	81.4	6.6e-262
AXE03405.1|1896997_1898518_+	DUF1073 domain-containing protein	NA	A0A2R3UAL5	Myoviridae_environmental_samples	43.7	4.8e-105
AXE03406.1|1898558_1899248_+|head	phage head morphogenesis protein	head	H9C0V1	Aeromonas_phage	49.6	2.0e-58
AXE03407.1|1899244_1900591_+	hypothetical protein	NA	A0A219YCD3	Aeromonas_phage	37.5	4.2e-68
AXE03408.1|1900592_1901075_+	hypothetical protein	NA	A0A2R3UAX9	Myoviridae_environmental_samples	52.4	8.9e-29
AXE03409.1|1901074_1902103_+	DUF2184 domain-containing protein	NA	A0A219YBB0	Aeromonas_phage	49.1	3.0e-82
AXE03410.1|1902106_1902454_+	hypothetical protein	NA	H9C0V9	Aeromonas_phage	38.1	1.9e-09
AXE03411.1|1902460_1902916_+	DUF4054 domain-containing protein	NA	K4HYQ8	Acinetobacter_phage	35.4	3.0e-10
AXE03412.1|1902909_1903494_+	hypothetical protein	NA	A0A2I7QJD5	Vibrio_phage	32.0	4.2e-17
AXE03413.1|1903490_1903856_+	hypothetical protein	NA	A0A077KAW7	Edwardsiella_phage	39.7	8.8e-21
AXE03414.1|1903840_1904386_+	hypothetical protein	NA	NA	NA	NA	NA
AXE03415.1|1904366_1905851_+	hypothetical protein	NA	A0A077KGV4	Edwardsiella_phage	40.6	4.4e-95
AXE03416.1|1905851_1906298_+	hypothetical protein	NA	Q2NPD1	Xanthomonas_phage	39.7	4.8e-21
AXE03417.1|1906297_1906702_+	hypothetical protein	NA	H9C0W7	Aeromonas_phage	44.4	4.5e-18
AXE03418.1|1906746_1906926_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
AXE03419.1|1906909_1909081_+	lytic transglycosylase domain-containing protein	NA	A0A0M4REK7	Salmonella_phage	67.1	3.7e-50
AXE03420.1|1909077_1909788_+	hypothetical protein	NA	A0A077KGW3	Edwardsiella_phage	34.6	1.9e-27
AXE03421.1|1909787_1910090_+	hypothetical protein	NA	A0A077K9U4	Edwardsiella_phage	49.5	7.0e-24
AXE03422.1|1910086_1910956_+	hypothetical protein	NA	A0A077KC17	Edwardsiella_phage	33.1	4.1e-32
1910533:1910550	attL	GAAATTTGAAAATCAGGG	NA	NA	NA	NA
AXE03423.1|1910936_1911614_+	oxidoreductase	NA	H9C0X6	Aeromonas_phage	41.3	1.4e-24
AXE03424.1|1911626_1911983_+	hypothetical protein	NA	NA	NA	NA	NA
AXE03425.1|1911979_1913221_+	hypothetical protein	NA	A0A077KGW9	Edwardsiella_phage	49.6	5.9e-101
AXE03426.1|1913222_1913825_+	DUF2612 domain-containing protein	NA	H9C0Y0	Aeromonas_phage	43.8	2.0e-30
AXE03427.1|1913814_1915266_+|tail	tail fiber protein	tail	E5G6P0	Salmonella_phage	78.5	4.2e-50
AXE03428.1|1915262_1916087_+|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	89.1	9.5e-140
AXE03429.1|1916076_1916805_+	DUF4376 domain-containing protein	NA	A0A0M4RTP2	Salmonella_phage	72.7	6.8e-49
AXE03430.1|1916815_1917208_+|tail	phage tail protein	tail	I1TQ41	Pseudomonas_phage	40.8	2.0e-15
AXE03431.1|1917191_1917305_+	hypothetical protein	NA	A0A0M4RTP2	Salmonella_phage	80.0	4.7e-10
AXE03432.1|1917405_1917651_-	hypothetical protein	NA	NA	NA	NA	NA
AXE03433.1|1919196_1919598_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	47.7	5.8e-26
AXE05863.1|1920244_1920583_+	hypothetical protein	NA	B6DZB9	Enterobacteria_phage	48.4	2.4e-20
AXE03434.1|1920741_1921026_-	addiction module antidote protein, HigA family	NA	A0A2L1IV52	Escherichia_phage	54.5	4.7e-22
AXE03435.1|1921025_1921304_-	Killer protein	NA	A0A2L1IV28	Escherichia_phage	55.4	1.8e-26
AXE03436.1|1921887_1922571_-	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM0	Phage_Gifsy-2	74.8	3.1e-88
AXE05864.1|1923001_1923826_+	hypothetical protein	NA	Q8HAB4	Salmonella_phage	49.4	9.8e-36
AXE05865.1|1924552_1926823_+	E3 ubiquitin--protein ligase	NA	Q9MBL9	Phage_Gifsy-2	49.6	2.8e-24
1927149:1927166	attR	CCCTGATTTTCAAATTTC	NA	NA	NA	NA
>prophage 5
CP030238	Salmonella enterica strain SA20055162 chromosome, complete genome	4640729	2672333	2679380	4640729	integrase	Salmonella_phage(62.5%)	9	2668439:2668452	2682756:2682769
2668439:2668452	attL	TTAAAGCTTTCCTT	NA	NA	NA	NA
AXE04121.1|2672333_2673170_-	antitermination protein	NA	A0A1B5FPA5	Escherichia_phage	75.9	1.6e-118
AXE04122.1|2673148_2673439_-	hypothetical protein	NA	A0A1B5FPA6	Escherichia_phage	76.3	1.7e-27
AXE04123.1|2673453_2673864_-	cons domain protein	NA	A0A1C9IHZ5	Salmonella_phage	97.7	1.2e-71
AXE04124.1|2674513_2675053_+	HD family hydrolase	NA	A0A192Y8M4	Salmonella_phage	99.4	1.7e-97
AXE04125.1|2675123_2675858_+	hypothetical protein	NA	A0A192Y7N1	Salmonella_phage	97.7	1.6e-69
AXE04126.1|2675857_2676037_+	hypothetical protein	NA	A0A2H4FQT4	Salmonella_phage	96.6	2.0e-26
AXE04127.1|2676036_2676267_+	hypothetical protein	NA	A0A220NQV0	Salmonella_phage	93.3	3.6e-36
AXE04128.1|2678011_2678248_+	excisionase	NA	NA	NA	NA	NA
AXE04129.1|2678237_2679380_+|integrase	integrase	integrase	O21929	Phage_21	80.8	2.8e-174
2682756:2682769	attR	TTAAAGCTTTCCTT	NA	NA	NA	NA
>prophage 6
CP030238	Salmonella enterica strain SA20055162 chromosome, complete genome	4640729	3502684	3546760	4640729	transposase,plate,integrase	Saccharomonospora_phage(12.5%)	38	3545587:3545602	3549825:3549840
AXE04853.1|3502684_3503143_+|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	5.9e-14
AXE04854.1|3503262_3504882_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AXE05936.1|3505183_3505903_+	adhesin/invasin protein PagN	NA	NA	NA	NA	NA
AXE05937.1|3506598_3507330_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.9	6.4e-39
AXE04855.1|3507393_3507861_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.2	8.0e-51
AXE04856.1|3507857_3508580_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXE04857.1|3508614_3509370_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AXE04858.1|3509441_3510809_+	murein transglycosylase D	NA	A0A0A7NU10	Lactobacillus_phage	33.0	1.4e-10
AXE04859.1|3511261_3512059_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
AXE05938.1|3512310_3512580_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXE04860.1|3514532_3514817_-	type VI secretion system PAAR protein	NA	NA	NA	NA	NA
AXE04861.1|3515287_3516082_-	hypothetical protein	NA	NA	NA	NA	NA
AXE04862.1|3516597_3517095_-	hypothetical protein	NA	NA	NA	NA	NA
AXE04863.1|3517118_3517628_-	hypothetical protein	NA	NA	NA	NA	NA
AXE04864.1|3517624_3519085_-	hypothetical protein	NA	A0A2P1CFS5	Microbacterium_phage	51.0	2.5e-05
AXE04865.1|3519087_3519411_-	hypothetical protein	NA	NA	NA	NA	NA
AXE04866.1|3519477_3519900_-	hypothetical protein	NA	NA	NA	NA	NA
AXE04867.1|3519902_3522446_-	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	24.9	4.3e-21
AXE04868.1|3522671_3523190_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
AXE04869.1|3523869_3524370_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
AXE05939.1|3524407_3525883_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
AXE04870.1|3525885_3526314_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
AXE04871.1|3526313_3528149_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AXE05940.1|3528115_3529162_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AXE05941.1|3529178_3530468_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
AXE04872.1|3530464_3530998_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
AXE04873.1|3531000_3532344_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
AXE05942.1|3532423_3533161_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
AXE04874.1|3533169_3535920_+	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	31.6	8.2e-87
AXE04875.1|3535916_3536678_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA	NA
AXE04876.1|3536682_3538086_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
AXE04877.1|3538102_3541627_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
AXE04878.1|3541637_3542987_+	hypothetical protein	NA	NA	NA	NA	NA
AXE04879.1|3543011_3543491_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
AXE04880.1|3543525_3544389_+	flagellar biosynthesis protein FlgJ	NA	NA	NA	NA	NA
AXE04881.1|3544391_3544730_+	hypothetical protein	NA	NA	NA	NA	NA
AXE04882.1|3545077_3545935_-	hypothetical protein	NA	NA	NA	NA	NA
3545587:3545602	attL	GAATACCGGAGAATGT	NA	NA	NA	NA
AXE04883.1|3546484_3546760_-|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	41.0	4.9e-08
AXE04883.1|3546484_3546760_-|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	41.0	4.9e-08
3549825:3549840	attR	ACATTCTCCGGTATTC	NA	NA	NA	NA
