assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003336405.1_ASM333640v1	CP031105	Escherichia coli strain AMSCJX02 chromosome, complete genome	1	1275312-1276194	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,c2c9_V-U4,DinG,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,14,14	14	TypeI-E	DEDDh,c2c9_V-U4,DinG,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL,RT	NA,NA	NA|254aa|up_9|CP031105.1_1267124_1267886_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|CP031105.1_1267866_1268916_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|CP031105.1_1268912_1269392_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|CP031105.1_1269391_1270102_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|CP031105.1_1270120_1270432_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|CP031105.1_1270625_1270949_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|CP031105.1_1270998_1271604_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|CP031105.1_1271603_1273031_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|CP031105.1_1273032_1273941_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|CP031105.1_1274192_1275230_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas1|307aa|down_0|CP031105.1_1276583_1277504_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_1|CP031105.1_1277500_1278151_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_2|CP031105.1_1278132_1278879_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|358aa|down_3|CP031105.1_1278889_1279963_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|178aa|down_4|CP031105.1_1279977_1280511_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_5|CP031105.1_1280507_1282070_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_6|CP031105.1_1282167_1284867_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_7|CP031105.1_1285060_1285213_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_8|CP031105.1_1285477_1286212_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|CP031105.1_1286285_1287998_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCA_003336405.1_ASM333640v1	CP031105	Escherichia coli strain AMSCJX02 chromosome, complete genome	2	1301912-1302184	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,c2c9_V-U4,DinG,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,3	4	Unclear	DEDDh,c2c9_V-U4,DinG,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL,RT	NA,NA|47aa|down_1|CP031105.1_1303333_1303474_+	NA|424aa|up_9|CP031105.1_1290555_1291827_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|CP031105.1_1291817_1292078_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|CP031105.1_1292094_1292670_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|CP031105.1_1292817_1293678_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|CP031105.1_1293674_1294454_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|CP031105.1_1294431_1295769_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|CP031105.1_1295862_1297317_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|CP031105.1_1297386_1298172_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|CP031105.1_1298490_1299768_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|CP031105.1_1299794_1301273_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|CP031105.1_1302523_1303195_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|CP031105.1_1303333_1303474_+	NA	NA|291aa|down_2|CP031105.1_1303487_1304360_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|443aa|down_3|CP031105.1_1304405_1305734_-	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal	NA|433aa|down_4|CP031105.1_1305858_1307157_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_5|CP031105.1_1307244_1308882_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_6|CP031105.1_1309109_1309901_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_7|CP031105.1_1309971_1310307_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_8|CP031105.1_1310306_1310555_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_9|CP031105.1_1310632_1312867_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
GCA_003336405.1_ASM333640v1	CP031105	Escherichia coli strain AMSCJX02 chromosome, complete genome	3	3137576-3137691	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	GATAAGACGCGCCAGCGTCGCATCAGGCGTT	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL,RT	NA,NA	NA|126aa|up_9|CP031105.1_3123580_3123958_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|up_8|CP031105.1_3123960_3124782_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_7|CP031105.1_3124778_3125768_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_6|CP031105.1_3125767_3127054_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_5|CP031105.1_3127106_3129461_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_4|CP031105.1_3129715_3130531_+	PRK09430, djlA, co-chaperone DjlA	NA|220aa|up_3|CP031105.1_3130647_3131307_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|CP031105.1_3131318_3134225_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|CP031105.1_3134389_3136741_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|CP031105.1_3136815_3137511_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|CP031105.1_3137710_3139213_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|CP031105.1_3139223_3140924_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|CP031105.1_3141262_3142141_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|CP031105.1_3142226_3142991_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|CP031105.1_3143104_3143803_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|CP031105.1_3143786_3145397_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|CP031105.1_3145372_3146356_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|552aa|down_7|CP031105.1_3146519_3148175_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_8|CP031105.1_3148263_3148395_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|393aa|down_9|CP031105.1_3148496_3149675_+	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter
GCA_003336405.1_ASM333640v1	CP031105	Escherichia coli strain AMSCJX02 chromosome, complete genome	4	3649172-3649268	4	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL,RT	NA,NA	NA|454aa|up_9|CP031105.1_3637051_3638413_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|CP031105.1_3638469_3639771_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|CP031105.1_3639792_3640938_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|CP031105.1_3641066_3641852_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|CP031105.1_3641862_3643098_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|CP031105.1_3643119_3644169_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|CP031105.1_3644485_3646153_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|CP031105.1_3646162_3647422_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|CP031105.1_3647432_3648248_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|CP031105.1_3648244_3649138_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|CP031105.1_3649332_3650400_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|CP031105.1_3650396_3650906_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|CP031105.1_3651023_3651746_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|CP031105.1_3651748_3652243_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|CP031105.1_3652416_3653802_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|CP031105.1_3653837_3654359_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|CP031105.1_3654466_3654679_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|CP031105.1_3654680_3655547_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|CP031105.1_3656027_3656570_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|CP031105.1_3656789_3657482_+	PRK15195, PRK15195, molecular chaperone FimC
