assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003342655.1_ASM334265v1	CP031133	Bifidobacterium longum subsp. longum strain BORI chromosome, complete genome	2	1372384-1372464	2	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	Orphan	CGCACAGTGAAACCGTCTCATAT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	NA|107aa|up_5|CP031133.1_1362731_1363052_-,NA|327aa|down_0|CP031133.1_1373235_1374216_+	NA|170aa|up_9|CP031133.1_1358608_1359118_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|353aa|up_8|CP031133.1_1359157_1360216_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|319aa|up_7|CP031133.1_1360440_1361397_+	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|315aa|up_6|CP031133.1_1361521_1362466_+	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|107aa|up_5|CP031133.1_1362731_1363052_-	NA	NA|270aa|up_4|CP031133.1_1363051_1363861_-	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|518aa|up_3|CP031133.1_1363978_1365532_+	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|332aa|up_2|CP031133.1_1365653_1366649_+	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain	NA|1226aa|up_1|CP031133.1_1366767_1370445_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|535aa|up_0|CP031133.1_1370505_1372110_-	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|327aa|down_0|CP031133.1_1373235_1374216_+	NA	NA|532aa|down_1|CP031133.1_1374519_1376115_+	cd01087, Prolidase, Prolidase	NA|174aa|down_2|CP031133.1_1376163_1376685_+	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|570aa|down_3|CP031133.1_1376734_1378444_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|390aa|down_4|CP031133.1_1378447_1379617_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|364aa|down_5|CP031133.1_1379618_1380710_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|545aa|down_6|CP031133.1_1380875_1382510_-	cd08519, PBP2_NikA_DppA_OppA_like_20, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|428aa|down_7|CP031133.1_1382789_1384073_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|271aa|down_8|CP031133.1_1384128_1384941_-	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional	NA|375aa|down_9|CP031133.1_1385278_1386403_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
GCA_003342655.1_ASM334265v1	CP031133	Bifidobacterium longum subsp. longum strain BORI chromosome, complete genome	3	1765934-1768150	3,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	WYL,cas2,cas1,cas9	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	Type II-B,,Type II-C,Type II-A	GCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG,GCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG,GCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG,GCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	34,34,33,33	34	,TypeII-B,TypeII-C,TypeII-A	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	NA|91aa|up_0|CP031133.1_1765622_1765895_-,NA	NA|1395aa|up_9|CP031133.1_1749947_1754132_-	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	WYL|362aa|up_8|CP031133.1_1754209_1755295_+	pfam13280, WYL, WYL domain	NA|340aa|up_7|CP031133.1_1755528_1756548_+	TIGR03535, DapD_actino, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA|431aa|up_6|CP031133.1_1756761_1758054_-	cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like	NA|261aa|up_5|CP031133.1_1758327_1759110_-	cd01086, MetAP1, Methionine Aminopeptidase 1	NA|327aa|up_4|CP031133.1_1759299_1760280_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|746aa|up_3|CP031133.1_1760393_1762631_+	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	NA|246aa|up_2|CP031133.1_1762713_1763451_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|598aa|up_1|CP031133.1_1763726_1765520_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|91aa|up_0|CP031133.1_1765622_1765895_-	NA	NA|395aa|down_0|CP031133.1_1768231_1769416_-	pfam00872, Transposase_mut, Transposase, Mutator family	cas2|111aa|down_1|CP031133.1_1769699_1770032_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|CP031133.1_1770028_1770934_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1139aa|down_3|CP031133.1_1770937_1774354_-	pfam18470, Cas9_a, Cas9 alpha-helical lobe domain	NA|473aa|down_4|CP031133.1_1774587_1776006_-	cd18037, DEXSc_Pif1_like, DEAD-box helicase domain of Pif1	NA|217aa|down_5|CP031133.1_1776054_1776705_-	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|518aa|down_6|CP031133.1_1776872_1778426_-	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain	NA|428aa|down_7|CP031133.1_1778478_1779762_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|225aa|down_8|CP031133.1_1779758_1780433_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|226aa|down_9|CP031133.1_1780607_1781285_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates
GCA_003342655.1_ASM334265v1	CP031133	Bifidobacterium longum subsp. longum strain BORI chromosome, complete genome	4	1769550-1769649	4	CRISPRCasFinder	no	WYL,cas2,cas1,cas9	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	Type II-B,,Type II-C,Type II-A	GCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG	36	0	0	NA	NA	NA	1	1	,TypeII-B,TypeII-C,TypeII-A	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,casR	NA|91aa|up_1|CP031133.1_1765622_1765895_-,NA	WYL|362aa|up_9|CP031133.1_1754209_1755295_+	pfam13280, WYL, WYL domain	NA|340aa|up_8|CP031133.1_1755528_1756548_+	TIGR03535, DapD_actino, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA|431aa|up_7|CP031133.1_1756761_1758054_-	cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like	NA|261aa|up_6|CP031133.1_1758327_1759110_-	cd01086, MetAP1, Methionine Aminopeptidase 1	NA|327aa|up_5|CP031133.1_1759299_1760280_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|746aa|up_4|CP031133.1_1760393_1762631_+	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	NA|246aa|up_3|CP031133.1_1762713_1763451_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|598aa|up_2|CP031133.1_1763726_1765520_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|91aa|up_1|CP031133.1_1765622_1765895_-	NA	NA|395aa|up_0|CP031133.1_1768231_1769416_-	pfam00872, Transposase_mut, Transposase, Mutator family	cas2|111aa|down_0|CP031133.1_1769699_1770032_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_1|CP031133.1_1770028_1770934_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1139aa|down_2|CP031133.1_1770937_1774354_-	pfam18470, Cas9_a, Cas9 alpha-helical lobe domain	NA|473aa|down_3|CP031133.1_1774587_1776006_-	cd18037, DEXSc_Pif1_like, DEAD-box helicase domain of Pif1	NA|217aa|down_4|CP031133.1_1776054_1776705_-	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|518aa|down_5|CP031133.1_1776872_1778426_-	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain	NA|428aa|down_6|CP031133.1_1778478_1779762_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|225aa|down_7|CP031133.1_1779758_1780433_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|226aa|down_8|CP031133.1_1780607_1781285_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|235aa|down_9|CP031133.1_1781416_1782121_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
