assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003350945.1_ASM335094v1	CP028149	Clostridium perfringens strain JXJA17 chromosome, complete genome	3	1168876-1169078	3	CRISPRCasFinder	no		csx1,cas14j,RT,DEDDh,cas2,csa3,cas3,c2c9_V-U4,DinG,cas1,cas9	Orphan	TTTTAAGCAATATTTGTTTTTAGGT	25	0	0	NA	NA	NA	3	3	Orphan	csx1,cas14j,RT,DEDDh,cas2,csa3,cas3,c2c9_V-U4,DinG,cas1,cas9	NA,NA|104aa|down_1|CP028149.1_1170119_1170431_+,NA|241aa|down_7|CP028149.1_1176745_1177468_+,NA|73aa|down_8|CP028149.1_1177672_1177891_-,NA|366aa|down_9|CP028149.1_1178860_1179958_+	NA|493aa|up_9|CP028149.1_1160803_1162282_+	TIGR02518, Acetaldehyde_dehydrogenase_acetylating, acetaldehyde dehydrogenase (acetylating)	NA|97aa|up_8|CP028149.1_1162651_1162942_+	cd07059, BMC_PduA, 1,2-propanediol utilization protein A (PduA), Bacterial Micro-Compartment (BMC) domain	NA|259aa|up_7|CP028149.1_1163019_1163796_+	COG4812, EutT, Ethanolamine utilization cobalamin adenosyltransferase [Amino acid transport and metabolism]	NA|212aa|up_6|CP028149.1_1163805_1164441_+	PRK15070, PRK15070, phosphate propanoyltransferase	NA|253aa|up_5|CP028149.1_1164648_1165407_+	TIGR02536, putative_ethanolamine_utilization_protein, ethanolamine utilization protein	NA|91aa|up_4|CP028149.1_1165554_1165827_+	pfam03319, EutN_CcmL, Ethanolamine utilisation protein EutN/carboxysome	NA|185aa|up_3|CP028149.1_1165828_1166383_+	TIGR02526, putative_ethanolamine_utilization_protein, PduT-like ethanolamine utilization protein	NA|366aa|up_2|CP028149.1_1166433_1167531_+	PRK15086, PRK15086, ethanolamine utilization protein EutH; Provisional	NA|160aa|up_1|CP028149.1_1167527_1168007_+	pfam06249, EutQ, Ethanolamine utilisation protein EutQ	NA|159aa|up_0|CP028149.1_1168374_1168851_+	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|182aa|down_0|CP028149.1_1169283_1169829_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|104aa|down_1|CP028149.1_1170119_1170431_+	NA	NA|547aa|down_2|CP028149.1_1170744_1172385_+	COG2200, Rtn, c-di-GMP phosphodiesterase class I (EAL domain) [Signal    transduction mechanisms]	NA|207aa|down_3|CP028149.1_1172466_1173087_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|142aa|down_4|CP028149.1_1173528_1173954_+	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase	NA|604aa|down_5|CP028149.1_1174284_1176096_+	PRK08270, PRK08270, ribonucleoside triphosphate reductase	NA|153aa|down_6|CP028149.1_1176092_1176551_+	pfam13353, Fer4_12, 4Fe-4S single cluster domain	NA|241aa|down_7|CP028149.1_1176745_1177468_+	NA	NA|73aa|down_8|CP028149.1_1177672_1177891_-	NA	NA|366aa|down_9|CP028149.1_1178860_1179958_+	NA
GCA_003350945.1_ASM335094v1	CP028149	Clostridium perfringens strain JXJA17 chromosome, complete genome	4	1243136-1243224	4	CRISPRCasFinder	no		csx1,cas14j,RT,DEDDh,cas2,csa3,cas3,c2c9_V-U4,DinG,cas1,cas9	Orphan	TGTTACATAATTAGATTTATTAA	23	0	0	NA	NA	NA	1	1	Orphan	csx1,cas14j,RT,DEDDh,cas2,csa3,cas3,c2c9_V-U4,DinG,cas1,cas9	NA|74aa|up_9|CP028149.1_1233757_1233979_+,NA|177aa|up_7|CP028149.1_1236352_1236883_+,NA|104aa|up_6|CP028149.1_1237434_1237746_-,NA|144aa|up_4|CP028149.1_1240236_1240668_+,NA|169aa|up_1|CP028149.1_1241671_1242178_+,NA|202aa|down_0|CP028149.1_1243578_1244184_+,NA|230aa|down_3|CP028149.1_1248901_1249591_+,NA|106aa|down_4|CP028149.1_1249749_1250067_-,NA|186aa|down_7|CP028149.1_1252068_1252626_+,NA|118aa|down_8|CP028149.1_1253177_1253531_+	NA|74aa|up_9|CP028149.1_1233757_1233979_+	NA	NA|741aa|up_8|CP028149.1_1234137_1236360_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|177aa|up_7|CP028149.1_1236352_1236883_+	NA	NA|104aa|up_6|CP028149.1_1237434_1237746_-	NA	NA|364aa|up_5|CP028149.1_1237974_1239066_+	NF033479, Efa1_rel_toxin, LifA/Efa1-related large cytotoxin	NA|144aa|up_4|CP028149.1_1240236_1240668_+	NA	NA|132aa|up_3|CP028149.1_1240700_1241096_-	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|66aa|up_2|CP028149.1_1241469_1241667_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|169aa|up_1|CP028149.1_1241671_1242178_+	NA	NA|151aa|up_0|CP028149.1_1242619_1243072_+	COG3339, COG3339, Uncharacterized conserved protein [Function unknown]	NA|202aa|down_0|CP028149.1_1243578_1244184_+	NA	NA|634aa|down_1|CP028149.1_1244196_1246098_+	pfam00350, Dynamin_N, Dynamin family	NA|717aa|down_2|CP028149.1_1246114_1248265_+	cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins	NA|230aa|down_3|CP028149.1_1248901_1249591_+	NA	NA|106aa|down_4|CP028149.1_1249749_1250067_-	NA	NA|232aa|down_5|CP028149.1_1250273_1250969_-	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion]	NA|235aa|down_6|CP028149.1_1250990_1251695_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|186aa|down_7|CP028149.1_1252068_1252626_+	NA	NA|118aa|down_8|CP028149.1_1253177_1253531_+	NA	NA|160aa|down_9|CP028149.1_1253644_1254124_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X
GCA_003350945.1_ASM335094v1	CP028149	Clostridium perfringens strain JXJA17 chromosome, complete genome	5	1723039-1725903	5,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas9	csx1,cas14j,RT,DEDDh,cas2,csa3,cas3,c2c9_V-U4,DinG,cas1,cas9	 Type II-B,Type II-C, or Type II-C?,Type II-B,Type II-A	GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT,GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT,GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT,GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	43,43,34,34	43	TypeII-B,TypeII-C,TypeII-B,orTypeII-C?,TypeII-A	csx1,cas14j,RT,DEDDh,cas2,csa3,cas3,c2c9_V-U4,DinG,cas1,cas9	NA|328aa|up_9|CP028149.1_1706669_1707653_-,NA|113aa|up_7|CP028149.1_1709060_1709399_-,NA	NA|328aa|up_9|CP028149.1_1706669_1707653_-	NA	NA|241aa|up_8|CP028149.1_1708158_1708881_-	pfam12811, BaxI_1, Bax inhibitor 1 like	NA|113aa|up_7|CP028149.1_1709060_1709399_-	NA	NA|469aa|up_6|CP028149.1_1709422_1710829_-	PRK12831, PRK12831, putative oxidoreductase; Provisional	NA|300aa|up_5|CP028149.1_1710821_1711721_-	PRK06222, PRK06222, sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein	NA|389aa|up_4|CP028149.1_1711871_1713038_-	cd08179, NADPH_BDH, NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria	NA|484aa|up_3|CP028149.1_1713149_1714601_-	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|957aa|up_2|CP028149.1_1715204_1718075_+	pfam08239, SH3_3, Bacterial SH3 domain	NA|677aa|up_1|CP028149.1_1718268_1720299_-	TIGR02653, putative_ATP-dependent_Lon_protease, conserved hypothetical protein	NA|849aa|up_0|CP028149.1_1720413_1722960_-	TIGR02687, conserved_hypothetical_protein, TIGR02687 family protein	cas2|103aa|down_0|CP028149.1_1725953_1726262_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|300aa|down_1|CP028149.1_1726269_1727169_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1066aa|down_2|CP028149.1_1727169_1730367_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|351aa|down_3|CP028149.1_1730701_1731754_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|1224aa|down_4|CP028149.1_1731867_1735539_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|1222aa|down_5|CP028149.1_1735552_1739218_-	NF033441, BREX_BrxC, BREX system P-loop protein BrxC	NA|194aa|down_6|CP028149.1_1739293_1739875_-	pfam08747, DUF1788, Domain of unknown function (DUF1788)	NA|198aa|down_7|CP028149.1_1740052_1740646_-	pfam08849, DUF1819, Putative inner membrane protein (DUF1819)	NA|305aa|down_8|CP028149.1_1740835_1741750_-	pfam13391, HNH_2, HNH endonuclease	NA|157aa|down_9|CP028149.1_1742089_1742560_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCA_003350945.1_ASM335094v1	CP028149	Clostridium perfringens strain JXJA17 chromosome, complete genome	6	2377584-2377696	6	CRISPRCasFinder	no		csx1,cas14j,RT,DEDDh,cas2,csa3,cas3,c2c9_V-U4,DinG,cas1,cas9	Orphan	TTCTATTTAAATCTATTACTTTACATAA	28	0	0	NA	NA	NA	1	1	Orphan	csx1,cas14j,RT,DEDDh,cas2,csa3,cas3,c2c9_V-U4,DinG,cas1,cas9	NA,NA|121aa|down_0|CP028149.1_2377766_2378129_-,NA|116aa|down_2|CP028149.1_2378970_2379318_-,NA|147aa|down_3|CP028149.1_2379314_2379755_-,NA|204aa|down_4|CP028149.1_2379714_2380326_-,NA|117aa|down_5|CP028149.1_2380300_2380651_-,NA|99aa|down_6|CP028149.1_2380697_2380994_-	NA|136aa|up_9|CP028149.1_2371385_2371793_-	PRK00202, nusB, transcription antitermination factor NusB	NA|130aa|up_8|CP028149.1_2371911_2372301_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|166aa|up_7|CP028149.1_2372385_2372883_-	pfam12685, SpoIIIAH, SpoIIIAH-like protein	NA|202aa|up_6|CP028149.1_2372908_2373514_-	TIGR02830, Stage_III_sporulation_protein_AG, stage III sporulation protein AG	NA|186aa|up_5|CP028149.1_2373528_2374086_-	TIGR02896, Stage_III_sporulation_protein_AF, stage III sporulation protein AF	NA|391aa|up_4|CP028149.1_2374093_2375266_-	TIGR02829, Stage_III_sporulation_protein_AE, stage III sporulation protein AE	NA|129aa|up_3|CP028149.1_2375276_2375663_-	TIGR02849, Stage_III_sporulation_protein_AD, stage III sporulation protein AD	NA|66aa|up_2|CP028149.1_2375748_2375946_-	TIGR02848, Stage_III_sporulation_protein_AC, stage III sporulation protein AC	NA|172aa|up_1|CP028149.1_2376021_2376537_-	TIGR02833, Stage_III_sporulation_protein_AB, stage III sporulation protein AB	NA|295aa|up_0|CP028149.1_2376683_2377568_-	TIGR02858, Stage_III_sporulation_protein_AA, stage III sporulation protein AA	NA|121aa|down_0|CP028149.1_2377766_2378129_-	NA	NA|186aa|down_1|CP028149.1_2378242_2378800_-	PRK00529, PRK00529, elongation factor P; Validated	NA|116aa|down_2|CP028149.1_2378970_2379318_-	NA	NA|147aa|down_3|CP028149.1_2379314_2379755_-	NA	NA|204aa|down_4|CP028149.1_2379714_2380326_-	NA	NA|117aa|down_5|CP028149.1_2380300_2380651_-	NA	NA|99aa|down_6|CP028149.1_2380697_2380994_-	NA	NA|171aa|down_7|CP028149.1_2381128_2381641_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|143aa|down_8|CP028149.1_2381660_2382089_-	PRK10557, PRK10557, prepilin peptidase-dependent protein	NA|340aa|down_9|CP028149.1_2382081_2383101_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
