assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003351385.1_ASM335138v1	CP031231	Escherichia coli strain Es_ST410_NW1_NDM_09_2017 chromosome, complete genome	1	982937-983052	1	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	Orphan	GATAAGACGCGCCAGCGTCGCATCAGGCGTT	31	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	NA,NA	NA|160aa|up_9|CP031231.1_967537_968017_+	PRK10769, folA, type 3 dihydrofolate reductase	NA|281aa|up_8|CP031231.1_968094_968937_-	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|126aa|up_7|CP031231.1_968943_969321_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|up_6|CP031231.1_969323_970145_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|429aa|up_5|CP031231.1_971129_972416_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|272aa|up_4|CP031231.1_975076_975892_+	PRK09430, djlA, co-chaperone DjlA	NA|220aa|up_3|CP031231.1_976008_976668_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|CP031231.1_976679_979586_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|CP031231.1_979750_982102_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|CP031231.1_982176_982872_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|CP031231.1_983071_984574_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|293aa|down_1|CP031231.1_986622_987501_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_2|CP031231.1_987586_988351_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_3|CP031231.1_988464_989163_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_4|CP031231.1_989146_990757_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_5|CP031231.1_990732_991716_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|552aa|down_6|CP031231.1_991879_993535_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_7|CP031231.1_993623_993755_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|393aa|down_8|CP031231.1_993856_995035_+	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|202aa|down_9|CP031231.1_995083_995689_-	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit
GCA_003351385.1_ASM335138v1	CP031231	Escherichia coli strain Es_ST410_NW1_NDM_09_2017 chromosome, complete genome	2	1173070-1173223	2	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	Orphan	CGCGTCTTATCATGCCTACAAACCTGTGCCGGATCGGTAGGCCGGATAAGGCG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	NA|150aa|up_7|CP031231.1_1163042_1163492_+,NA|63aa|down_4|CP031231.1_1177494_1177683_-	NA|451aa|up_9|CP031231.1_1156777_1158130_-	COG3515, COG3515, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|1020aa|up_8|CP031231.1_1159971_1163031_+	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]	NA|150aa|up_7|CP031231.1_1163042_1163492_+	NA	NA|257aa|up_6|CP031231.1_1164931_1165702_-	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|158aa|up_5|CP031231.1_1165855_1166329_+	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|193aa|up_4|CP031231.1_1169054_1169633_+	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|256aa|up_3|CP031231.1_1169838_1170606_+	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|247aa|up_2|CP031231.1_1170576_1171317_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|253aa|up_1|CP031231.1_1171608_1172367_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|166aa|up_0|CP031231.1_1172542_1173040_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|580aa|down_0|CP031231.1_1173357_1175097_-	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|263aa|down_1|CP031231.1_1175038_1175827_+	PRK06778, PRK06778, hypothetical protein; Validated	NA|352aa|down_2|CP031231.1_1175897_1176953_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|151aa|down_3|CP031231.1_1176949_1177402_+	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|63aa|down_4|CP031231.1_1177494_1177683_-	NA	NA|89aa|down_5|CP031231.1_1177708_1177975_+	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|486aa|down_6|CP031231.1_1178331_1179789_-	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|154aa|down_7|CP031231.1_1180049_1180511_+	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|415aa|down_8|CP031231.1_1180602_1181847_+	PRK05077, frsA, esterase FrsA	NA|134aa|down_9|CP031231.1_1181904_1182306_+	PRK10984, PRK10984, sigma factor-binding protein Crl
GCA_003351385.1_ASM335138v1	CP031231	Escherichia coli strain Es_ST410_NW1_NDM_09_2017 chromosome, complete genome	3	3288084-3288210	3	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	NA,NA|284aa|down_3|CP031231.1_3291240_3292092_+,NA|105aa|down_4|CP031231.1_3292773_3293088_+	NA|395aa|up_9|CP031231.1_3266991_3268176_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|CP031231.1_3268249_3269026_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|CP031231.1_3269030_3270680_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1535aa|up_6|CP031231.1_3270680_3275285_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|CP031231.1_3275218_3275842_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|CP031231.1_3275838_3277527_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|CP031231.1_3277675_3280303_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|CP031231.1_3280449_3281172_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|CP031231.1_3281299_3285052_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|CP031231.1_3285747_3288033_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|CP031231.1_3288266_3289397_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|CP031231.1_3289396_3289651_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|CP031231.1_3289704_3290355_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|284aa|down_3|CP031231.1_3291240_3292092_+	NA	NA|105aa|down_4|CP031231.1_3292773_3293088_+	NA	NA|359aa|down_5|CP031231.1_3293306_3294383_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_6|CP031231.1_3294387_3295746_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_7|CP031231.1_3296018_3297647_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_8|CP031231.1_3297636_3298896_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_9|CP031231.1_3298892_3300083_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
GCA_003351385.1_ASM335138v1	CP031231	Escherichia coli strain Es_ST410_NW1_NDM_09_2017 chromosome, complete genome	4	3869302-3869880	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5	cas3,DEDDh,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACA,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,30,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Unclear	cas3,DEDDh,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	NA,NA	NA|254aa|up_9|CP031231.1_3861115_3861877_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|CP031231.1_3861857_3862907_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|CP031231.1_3862903_3863383_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|CP031231.1_3863382_3864093_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|CP031231.1_3864111_3864423_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|CP031231.1_3864615_3864939_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|CP031231.1_3864988_3865594_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|CP031231.1_3865593_3867021_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|CP031231.1_3867022_3867931_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|CP031231.1_3868182_3869220_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|CP031231.1_3869975_3870269_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|CP031231.1_3870265_3871189_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|CP031231.1_3871185_3871836_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|CP031231.1_3871817_3872564_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|51aa|down_4|CP031231.1_3875415_3875568_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_5|CP031231.1_3875832_3876567_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_6|CP031231.1_3876640_3878353_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_7|CP031231.1_3878352_3880152_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|down_8|CP031231.1_3880467_3880833_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|down_9|CP031231.1_3880910_3882182_+	PRK10015, PRK10015, oxidoreductase; Provisional
GCA_003351385.1_ASM335138v1	CP031231	Escherichia coli strain Es_ST410_NW1_NDM_09_2017 chromosome, complete genome	5	3892243-3892759	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no		cas3,DEDDh,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	cas3,DEDDh,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	NA,NA|47aa|down_1|CP031231.1_3893908_3894049_+	NA|122aa|up_9|CP031231.1_3880467_3880833_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_8|CP031231.1_3880910_3882182_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_7|CP031231.1_3882172_3882433_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_6|CP031231.1_3882449_3883025_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|260aa|up_5|CP031231.1_3884006_3884786_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|CP031231.1_3884763_3886101_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|CP031231.1_3886194_3887649_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|CP031231.1_3887718_3888504_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|CP031231.1_3888821_3890099_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|CP031231.1_3890125_3891604_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|CP031231.1_3893098_3893770_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|CP031231.1_3893908_3894049_+	NA	NA|291aa|down_2|CP031231.1_3894062_3894935_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|CP031231.1_3894994_3896293_-	PRK00077, eno, enolase; Provisional	NA|264aa|down_4|CP031231.1_3898246_3899038_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|CP031231.1_3899108_3899444_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|CP031231.1_3899443_3899692_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|CP031231.1_3899769_3902004_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|CP031231.1_3902051_3903353_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|CP031231.1_3903409_3906166_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCA_003351385.1_ASM335138v1	CP031231	Escherichia coli strain Es_ST410_NW1_NDM_09_2017 chromosome, complete genome	6	4311753-4311892	6	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	Orphan	TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGACACAAA	49	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	NA,NA	NA|264aa|up_9|CP031231.1_4298678_4299470_+	PRK09855, PRK09855, PTS N-acetylgalactosamine transporter subunit IID	NA|252aa|up_8|CP031231.1_4299470_4300226_+	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional	NA|232aa|up_7|CP031231.1_4301643_4302339_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|791aa|up_6|CP031231.1_4303712_4306085_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|364aa|up_5|CP031231.1_4306095_4307187_+	pfam00419, Fimbrial, Fimbrial protein	NA|287aa|up_4|CP031231.1_4307229_4308090_-	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|679aa|up_3|CP031231.1_4308154_4310191_+	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|132aa|up_2|CP031231.1_4310148_4310544_+	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|197aa|up_1|CP031231.1_4310563_4311154_+	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|192aa|up_0|CP031231.1_4311163_4311739_+	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|347aa|down_0|CP031231.1_4311943_4312984_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|212aa|down_1|CP031231.1_4313056_4313692_-	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|173aa|down_2|CP031231.1_4313819_4314338_+	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|148aa|down_3|CP031231.1_4314317_4314761_-	PRK03467, PRK03467, hypothetical protein; Provisional	NA|101aa|down_4|CP031231.1_4314811_4315114_+	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|168aa|down_5|CP031231.1_4315100_4315604_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|176aa|down_6|CP031231.1_4315597_4316125_-	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|332aa|down_7|CP031231.1_4316333_4317329_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|293aa|down_8|CP031231.1_4317337_4318216_+	PRK15447, PRK15447, putative protease; Provisional	NA|336aa|down_9|CP031231.1_4318421_4319429_+	PRK10508, PRK10508, luciferase-like monooxygenase
