The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP011800	Xylella taiwanensis strain PLS235 chromosome, complete genome	2824527	741028	748217	2824527		Xylella_phage(57.14%)	12	NA	NA
AXI83012.1|741028_742414_-	hypothetical protein	NA	C8CLF7	Xylella_phage	84.1	1.7e-234
AXI83013.1|742489_742774_+	hypothetical protein	NA	NA	NA	NA	NA
AXI83014.1|742775_743048_-	hypothetical protein	NA	C8CLF9	Xylella_phage	78.9	4.4e-33
AXI83015.1|744201_744900_+	hypothetical protein	NA	C8CLH7	Xylella_phage	68.3	5.0e-81
AXI83016.1|744960_745239_+	hypothetical protein	NA	NA	NA	NA	NA
AXI83017.1|745204_745516_+	hypothetical protein	NA	NA	NA	NA	NA
AXI83018.1|745736_746258_+	peptidase	NA	V5YSX1	Pseudomonas_phage	50.3	1.7e-30
AXI83019.1|746250_746577_+	hypothetical protein	NA	NA	NA	NA	NA
AXI83020.1|746566_747028_+	hypothetical protein	NA	A0A0S0N8C8	Pseudomonas_phage	33.1	1.2e-09
AXI83021.1|747029_747245_+	hypothetical protein	NA	NA	NA	NA	NA
AXI83022.1|747255_747993_+	DNA methyltransferase	NA	A0A097EWK8	Mycobacterium_phage	52.1	3.8e-63
AXI83023.1|747992_748217_+	hypothetical protein	NA	C8CLI3	Xylella_phage	71.6	6.1e-25
>prophage 2
CP011800	Xylella taiwanensis strain PLS235 chromosome, complete genome	2824527	1313259	1319207	2824527		Geobacillus_phage(16.67%)	8	NA	NA
AXI83442.1|1313259_1313877_+	muramidase	NA	A0A1U9WQS3	Geobacillus_phage	32.7	3.0e-21
AXI83443.1|1314475_1314739_+	hypothetical protein	NA	NA	NA	NA	NA
AXI83444.1|1314815_1315016_+	hypothetical protein	NA	C8CLH7	Xylella_phage	69.0	8.2e-13
AXI83445.1|1315437_1315731_+	addiction module antitoxin	NA	A4JWV1	Burkholderia_virus	42.5	3.9e-11
AXI83446.1|1316046_1316415_+	hypothetical protein	NA	B5AX60	Iodobacteriophage	31.4	6.2e-06
AXI83447.1|1316462_1317029_-	hypothetical protein	NA	NA	NA	NA	NA
AXI83448.1|1317946_1318702_+	hypothetical protein	NA	A0A2D0W9A4	Bordetella_phage	37.6	2.2e-21
AXI83449.1|1318694_1319207_+	hypothetical protein	NA	G8CLC0	Synechococcus_phage	37.3	2.1e-12
>prophage 3
CP011800	Xylella taiwanensis strain PLS235 chromosome, complete genome	2824527	1322245	1330198	2824527	integrase	Stenotrophomonas_phage(42.86%)	9	1316242:1316257	1332638:1332653
1316242:1316257	attL	GATGCCGCCGCCGCCG	NA	NA	NA	NA
AXI83455.1|1322245_1323394_+	Replication initiation factor	NA	S0F3F7	Stenotrophomonas_phage	44.9	5.1e-75
AXI83456.1|1323734_1323941_+	membrane protein	NA	S0F2M5	Stenotrophomonas_phage	66.7	3.7e-16
AXI83457.1|1323949_1324168_+	hypothetical protein	NA	A0A1W6DXZ2	Xanthomonas_phage	51.0	1.1e-05
AXI83458.1|1325706_1326048_+	hypothetical protein	NA	A0A1D6ZIU0	Xanthomonas_phage	49.5	7.9e-24
AXI83459.1|1326047_1327196_+	filamentous phage Cf1c related protein	NA	S0F3F8	Stenotrophomonas_phage	59.1	1.4e-128
AXI83460.1|1327200_1327512_-	plasmid stabilization protein	NA	NA	NA	NA	NA
AXI83461.1|1327837_1328065_-	hypothetical protein	NA	NA	NA	NA	NA
AXI83462.1|1328112_1328985_+|integrase	integrase	integrase	Q7Y5X7	Haemophilus_phage	44.3	2.6e-63
AXI83463.1|1329730_1330198_-	endolysin	NA	C8CLH9	Xylella_phage	67.1	7.2e-52
1332638:1332653	attR	CGGCGGCGGCGGCATC	NA	NA	NA	NA
>prophage 4
CP011800	Xylella taiwanensis strain PLS235 chromosome, complete genome	2824527	1463873	1471008	2824527		Stenotrophomonas_phage(50.0%)	8	NA	NA
AXI83593.1|1463873_1465022_-	filamentous phage Cf1c related protein	NA	S0F3F8	Stenotrophomonas_phage	59.1	1.4e-128
AXI83594.1|1465021_1465363_-	hypothetical protein	NA	A0A1D6ZIU0	Xanthomonas_phage	49.5	7.9e-24
AXI83595.1|1466901_1467120_-	hypothetical protein	NA	A0A1W6DXZ2	Xanthomonas_phage	51.0	1.1e-05
AXI83596.1|1467128_1467335_-	membrane protein	NA	S0F2M5	Stenotrophomonas_phage	66.7	3.7e-16
AXI83597.1|1467337_1467631_-	hypothetical protein	NA	NA	NA	NA	NA
AXI83598.1|1467676_1468825_-	Replication initiation factor	NA	S0F3F7	Stenotrophomonas_phage	44.9	5.1e-75
AXI83599.1|1469255_1469438_-	hypothetical protein	NA	NA	NA	NA	NA
AXI83600.1|1470339_1471008_-	7-cyano-7-deazaguanine synthase	NA	A0A0A0RPC6	Escherichia_phage	36.7	5.3e-24
>prophage 5
CP011800	Xylella taiwanensis strain PLS235 chromosome, complete genome	2824527	1550172	1558726	2824527		Pseudomonas_phage(33.33%)	9	NA	NA
AXI83653.1|1550172_1552701_-	exoribonuclease R	NA	Q0GXV6	Lactococcus_phage	36.4	6.0e-68
AXI83654.1|1554475_1554985_+	peptidase	NA	V5YSX1	Pseudomonas_phage	48.8	1.7e-30
AXI83655.1|1554977_1555304_+	hypothetical protein	NA	NA	NA	NA	NA
AXI83656.1|1555293_1555755_+	hypothetical protein	NA	A0A0S0N8C8	Pseudomonas_phage	32.3	2.0e-09
AXI83657.1|1555756_1555972_+	hypothetical protein	NA	NA	NA	NA	NA
AXI83658.1|1556502_1557009_+	hypothetical protein	NA	C8CLJ7	Xylella_phage	71.2	2.6e-23
AXI83659.1|1557650_1557839_+	hypothetical protein	NA	NA	NA	NA	NA
AXI83660.1|1558048_1558351_+	toxin RelE	NA	A0A0P0ZE17	Stx2-converting_phage	49.5	2.3e-19
AXI83661.1|1558366_1558726_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	66.1	3.5e-38
