The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	2768276	716909	724729	2768276		Hokovirus(16.67%)	10	NA	NA
AXJ32605.1|716909_717965_-	Histidine protein kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
AXJ32606.1|717964_718651_-	Response regulator SaeR	NA	NA	NA	NA	NA
AXJ32607.1|718625_719099_-	DoxX	NA	NA	NA	NA	NA
AXJ32608.1|719440_719881_-	Electron transfer DM13	NA	NA	NA	NA	NA
AXJ32609.1|720160_720745_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ32610.1|720843_721557_-	7-carboxy-7-deazaguanine synthase	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AXJ32611.1|721560_721980_-	6-carboxy-5,6,7,8-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
AXJ32612.1|721981_722650_-	7-cyano-7-deazaguanine synthase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AXJ32613.1|723000_723594_+	Anthranilate synthase component 2	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AXJ32614.1|723577_724729_+	Aminodeoxychorismate synthase component 1	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 2
CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	2768276	736702	751478	2768276		uncultured_Caudovirales_phage(50.0%)	12	NA	NA
AXJ32623.1|736702_737761_+	Histidinol-phosphate aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
AXJ32624.1|738111_738654_+	Putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AXJ32625.1|739333_740251_-	Putative lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
AXJ32626.1|740520_742026_-	Di-/tripeptide transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AXJ32627.1|742366_742867_-	NADPH-dependent 7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AXJ32628.1|742886_743753_-	EamA-like transporter family protein	NA	NA	NA	NA	NA
AXJ32629.1|744542_744941_+	ribonucleotide reductase stimulatory protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AXJ32630.1|744903_747009_+	Ribonucleoside-diphosphate reductase subunit alpha 2	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AXJ32631.1|747126_748098_+	Ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AXJ32632.1|748763_749777_+	Fe(3+) dicitrate transport system permease protein FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.0	2.2e-138
AXJ32633.1|749763_750720_+	Iron-uptake system permease protein FeuC	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AXJ32634.1|750716_751478_+	putative siderophore transport system ATP-binding protein YusV	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	2768276	830245	851453	2768276	transposase	Staphylococcus_phage(77.78%)	33	NA	NA
AXJ32711.1|830245_831271_+	Methionine import ATP-binding protein MetN 2	NA	G3M9Y6	Bacillus_virus	33.3	3.9e-26
AXJ32712.1|831263_831959_+	Methionine import system permease protein MetP	NA	NA	NA	NA	NA
AXJ32713.1|831976_832798_+	Methionine-binding lipoprotein MetQ precursor	NA	NA	NA	NA	NA
AXJ32714.1|832939_834160_-|transposase	transposase	transposase	Q4ZE80	Staphylococcus_phage	47.5	6.4e-100
AXJ32715.1|834248_834977_-	Enterotoxin type A precursor	NA	A0EX09	Staphylococcus_phage	32.3	1.9e-22
AXJ32716.1|835000_835729_-	Enterotoxin type A precursor	NA	A0EX09	Staphylococcus_phage	35.4	2.3e-28
AXJ32717.1|835798_836230_-	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
AXJ32718.1|836246_836705_-	hypothetical protein	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
AXJ32719.1|836716_837049_-	helix-turn-helix protein	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
AXJ32720.1|837241_837505_+	helix-turn-helix protein	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	3.1e-36
AXJ32721.1|837497_837770_+	hypothetical protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
AXJ32722.1|837781_837928_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ32723.1|837920_838130_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
AXJ32724.1|838132_838453_+	hypothetical protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
AXJ32725.1|838516_839386_+	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	3.4e-156
AXJ32726.1|839402_840860_+	Virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	96.1	1.0e-277
AXJ32727.1|841160_841523_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
AXJ32728.1|841524_841809_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	1.9e-47
AXJ32729.1|841805_842447_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	91.5	1.5e-108
AXJ32730.1|842963_843305_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
AXJ32731.1|843316_843895_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
AXJ32732.1|843912_844131_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ32733.1|844181_844709_+	hypothetical protein	NA	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
AXJ32734.1|844711_845053_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	98.2	1.4e-57
AXJ32735.1|845049_845619_+	Terminase small subunit	NA	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
AXJ32736.1|845926_846727_+	Enterotoxin type B precursor	NA	A0A097PAT7	Streptococcus_pyogenes_phage	49.4	1.0e-53
AXJ32737.1|846804_847362_-	hypothetical protein	NA	A0A1W6JQE5	Staphylococcus_phage	73.8	1.4e-70
AXJ32738.1|847758_847887_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	1.1e-15
AXJ32739.1|847957_848068_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	94.4	2.4e-11
AXJ32740.1|848069_848255_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
AXJ32741.1|849085_849280_+	CsbD-like protein	NA	NA	NA	NA	NA
AXJ32742.1|849512_850364_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ32743.1|850691_851453_+	YurY	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 4
CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	2768276	1461021	1548081	2768276	portal,tRNA,lysis,holin,protease,capsid,transposase,head,terminase,tail	Staphylococcus_phage(64.94%)	102	NA	NA
AXJ33271.1|1461021_1462314_-|tRNA	Asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
AXJ33272.1|1462635_1465329_-	hypothetical protein	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
AXJ33273.1|1465352_1466324_-	Bifunctional ligase/repressor BirA	NA	NA	NA	NA	NA
AXJ33274.1|1466310_1467513_-	CCA-adding enzyme	NA	H7BUW3	unidentified_phage	42.5	3.2e-35
AXJ33275.1|1467517_1468660_-	GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase	NA	NA	NA	NA	NA
AXJ33276.1|1468900_1469218_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
AXJ33277.1|1469554_1470253_-	Putative neutral zinc metallopeptidase	NA	NA	NA	NA	NA
AXJ33278.1|1470306_1470894_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ33279.1|1470883_1471471_-	hypothetical protein	NA	G3MAV7	Bacillus_virus	27.2	2.8e-08
AXJ33280.1|1471472_1472717_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AXJ33281.1|1472723_1474022_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AXJ33282.1|1474031_1475096_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
AXJ33283.1|1475121_1476288_-	Chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
AXJ33284.1|1476673_1476874_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ33285.1|1477082_1477532_-	Nucleoside diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
AXJ33286.1|1477623_1478583_-	Heptaprenyl diphosphate synthase component 2	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
AXJ33287.1|1478584_1479310_-	Demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
AXJ33288.1|1479312_1479885_-	Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1	NA	NA	NA	NA	NA
AXJ33289.1|1480315_1480588_-	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
AXJ33290.1|1480758_1481757_-	Glycerol-3-phosphate dehydrogenase [NAD(P)+]	NA	NA	NA	NA	NA
AXJ33291.1|1481773_1483084_-	GTPase Der	NA	NA	NA	NA	NA
AXJ33292.1|1483305_1484481_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AXJ33293.1|1485192_1485852_-	Cytidylate kinase	NA	NA	NA	NA	NA
AXJ33294.1|1485928_1486897_+	putative L-asparaginase	NA	NA	NA	NA	NA
AXJ33295.1|1487011_1487998_-	Glucosaminate ammonia-lyase	NA	NA	NA	NA	NA
AXJ33296.1|1488399_1489860_-	Elastin-binding protein EbpS	NA	NA	NA	NA	NA
AXJ33297.1|1490012_1491392_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
AXJ33298.1|1491381_1492335_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ33299.1|1492442_1492691_+	Ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
AXJ33300.1|1492796_1493342_-	Riboflavin transporter RibU	NA	NA	NA	NA	NA
AXJ33301.1|1493938_1494853_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ33302.1|1494867_1495074_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ33303.1|1495066_1495945_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ33304.1|1496062_1496980_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ33305.1|1497070_1497418_-	hypothetical protein	NA	Q4ZCJ7	Staphylococcus_virus	100.0	3.0e-26
AXJ33306.1|1497662_1498499_-	hypothetical protein	NA	D2JLG6	Staphylococcus_phage	100.0	8.4e-152
AXJ33307.1|1499114_1500569_-	putative cell wall hydrolase LytN precursor	NA	Q8SDN4	Staphylococcus_virus	99.8	7.5e-289
AXJ33308.1|1500579_1500882_-|holin,lysis	Phage lysis protein, holin	holin,lysis	B7T0L0	Staphylococcus_virus	100.0	4.1e-48
AXJ33309.1|1501017_1501317_-	hypothetical protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
AXJ33310.1|1501362_1501527_-	hypothetical protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
AXJ33311.1|1501519_1501909_-	hypothetical protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
AXJ33312.1|1501908_1503375_-	hypothetical protein	NA	Q8SDN8	Staphylococcus_virus	100.0	3.4e-257
AXJ33313.1|1503374_1505285_-	hypothetical protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
AXJ33314.1|1505300_1505591_-	hypothetical protein	NA	Q8SDP0	Staphylococcus_virus	100.0	2.1e-49
AXJ33315.1|1505590_1507174_-|tail	Prophage endopeptidase tail	tail	Q8SDP1	Staphylococcus_virus	99.8	1.2e-308
AXJ33316.1|1507182_1508007_-|tail	Phage tail protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
AXJ33317.1|1508006_1514207_-	Glycyl-glycine endopeptidase ALE-1 precursor	NA	Q8SDP3	Staphylococcus_virus	100.0	0.0e+00
AXJ33318.1|1514220_1514379_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
AXJ33319.1|1514420_1514771_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
AXJ33320.1|1514828_1515284_-	Bacterial Ig-like domain (group 2)	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
AXJ33321.1|1515375_1516017_-|tail	Phage major tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
AXJ33322.1|1516051_1516447_-	hypothetical protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
AXJ33323.1|1516447_1516849_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
AXJ33324.1|1516845_1517178_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
AXJ33325.1|1517189_1517468_-|head,tail	Phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
AXJ33326.1|1517536_1518700_-|capsid	Phage capsid family protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
AXJ33327.1|1518711_1519485_-|protease	ATP-dependent Clp protease proteolytic subunit 1	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
AXJ33328.1|1519468_1520707_-|portal	Phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	100.0	1.2e-234
AXJ33329.1|1520711_1522403_-	Phage Terminase	NA	Q4ZD20	Staphylococcus_virus	99.8	0.0e+00
AXJ33330.1|1522392_1522698_-|terminase	Phage terminase, small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
AXJ33331.1|1522819_1523134_-	HNH endonuclease	NA	Q8SDQ2	Staphylococcus_virus	100.0	1.9e-56
AXJ33332.1|1523290_1523728_-	hypothetical protein	NA	A0A2K9VBV2	Staphylococcus_phage	99.3	7.9e-77
AXJ33333.1|1523740_1525099_-	hypothetical protein	NA	A0A2K9VBW3	Staphylococcus_phage	100.0	4.3e-262
AXJ33334.1|1525088_1525379_-	VRR-NUC domain protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
AXJ33335.1|1525719_1528167_-	Virulence-associated protein E	NA	Q4ZCG0	Staphylococcus_virus	99.9	0.0e+00
AXJ33336.1|1528218_1528419_-	hypothetical protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
AXJ33337.1|1528486_1528642_-	Transcriptional activator RinB	NA	Q4ZCG2	Staphylococcus_virus	100.0	9.1e-20
AXJ33338.1|1528641_1528842_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
AXJ33339.1|1528816_1529005_-	hypothetical protein	NA	Q4ZCG4	Staphylococcus_virus	100.0	1.6e-26
AXJ33340.1|1529041_1529584_-	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q4ZD81	Staphylococcus_virus	99.4	2.1e-95
AXJ33341.1|1529588_1529825_-	hypothetical protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
AXJ33342.1|1529817_1530126_-	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	100.0	8.1e-52
AXJ33343.1|1530122_1530470_-	YopX protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
AXJ33344.1|1530466_1530868_-	hypothetical protein	NA	A0A0N7E0T5	Staphylococcus_phage	100.0	7.0e-72
AXJ33345.1|1530870_1531077_-	hypothetical protein	NA	A0A0N9BAW9	Staphylococcus_phage	100.0	3.0e-34
AXJ33346.1|1531090_1531333_-	hypothetical protein	NA	Q8SDR2	Staphylococcus_virus	100.0	2.5e-40
AXJ33347.1|1531347_1531548_-	hypothetical protein	NA	A0A2I6PF32	Staphylococcus_phage	100.0	1.3e-29
AXJ33348.1|1531550_1531808_-	hypothetical protein	NA	A0A2I6PF10	Staphylococcus_phage	100.0	5.7e-43
AXJ33349.1|1531807_1532209_-	PVL ORF-50-like family protein	NA	A0A2I6PF14	Staphylococcus_phage	100.0	1.2e-68
AXJ33350.1|1532208_1532394_-	hypothetical protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
AXJ33351.1|1532406_1534368_-	DNA polymerase I, thermostable	NA	A0A2I6PF18	Staphylococcus_phage	100.0	0.0e+00
AXJ33352.1|1534427_1534985_-	hypothetical protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
AXJ33353.1|1535010_1536177_-	PD-(D/E)XK nuclease superfamily protein	NA	A0A2I6PDL4	Staphylococcus_phage	100.0	8.3e-222
AXJ33354.1|1536173_1536536_-	hypothetical protein	NA	A0A2K9VBV1	Staphylococcus_phage	100.0	6.4e-56
AXJ33355.1|1536641_1536875_-	hypothetical protein	NA	A7TWG2	Staphylococcus_phage	97.1	4.6e-31
AXJ33356.1|1536953_1537115_-	hypothetical protein	NA	A0A2I6PDF7	Staphylococcus_phage	96.2	1.2e-19
AXJ33357.1|1537126_1537390_-	hypothetical protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
AXJ33358.1|1537414_1537630_-	hypothetical protein	NA	A0A2I6PDN5	Staphylococcus_phage	95.8	5.5e-31
AXJ33359.1|1537685_1537916_+	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	97.4	1.8e-35
AXJ33360.1|1537912_1538089_-	hypothetical protein	NA	B7T0F9	Staphylococcus_virus	98.3	1.3e-25
AXJ33361.1|1538177_1538369_-	helix-turn-helix protein	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
AXJ33362.1|1538529_1538859_+	helix-turn-helix protein	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
AXJ33363.1|1538862_1539333_+	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	1.0e-85
AXJ33364.1|1539350_1539785_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	100.0	1.2e-24
AXJ33365.1|1539813_1540209_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	99.2	1.1e-69
AXJ33366.1|1540319_1540445_+	hypothetical protein	NA	A0A2I6PF02	Staphylococcus_phage	100.0	5.1e-13
AXJ33367.1|1540441_1541056_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	99.5	8.8e-106
AXJ33368.1|1541181_1542387_+|transposase	transposase	transposase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
AXJ33369.1|1542429_1544457_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.2	3.4e-114
AXJ33370.1|1544449_1545379_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ33371.1|1545623_1547375_-	Sensor protein SrrB	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
AXJ33372.1|1547355_1548081_-	Transcriptional regulatory protein SrrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 5
CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	2768276	1603205	1611517	2768276	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
AXJ33434.1|1603205_1603991_-	High-affinity zinc uptake system ATP-binding protein ZnuC	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
AXJ33435.1|1604116_1605007_-	putative endonuclease 4	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
AXJ33436.1|1605016_1606363_-	DEAD-box ATP-dependent RNA helicase CshB	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
AXJ33437.1|1606476_1607577_-	Putative GTP cyclohydrolase 1 type 2	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
AXJ33438.1|1607579_1608257_-|tRNA	tRNA (adenine(22)-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AXJ33439.1|1608387_1609494_-	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AXJ33440.1|1609717_1611517_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 6
CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	2768276	1680655	1689698	2768276	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AXJ33510.1|1680655_1681174_-	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
AXJ33511.1|1681195_1683469_-	Single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
AXJ33512.1|1683671_1685951_-	bifunctional preprotein translocase subunit SecD/SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AXJ33513.1|1686225_1686486_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AXJ33514.1|1686504_1687644_-|tRNA	Queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AXJ33515.1|1687666_1688692_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AXJ33516.1|1688693_1689698_-	Holliday junction ATP-dependent DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 7
CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	2768276	1815313	1896785	2768276	tRNA,protease	Staphylococcus_phage(93.44%)	70	NA	NA
AXJ33619.1|1815313_1821874_-	Extracellular matrix-binding protein ebh precursor	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
AXJ33620.1|1822199_1822511_-	molybdopterin biosynthesis-like protein MoeZ	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
AXJ33621.1|1822532_1824950_-|tRNA	Leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
AXJ33622.1|1825237_1826419_-	Multidrug resistance protein MdtH	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
AXJ33623.1|1826528_1827482_+	coproporphyrinogen III oxidase	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AXJ33624.1|1827478_1828042_+	16S rRNA m(4)C1402 methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AXJ33625.1|1828161_1828563_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
AXJ33626.1|1830141_1830969_-	Phospholipase YtpA	NA	NA	NA	NA	NA
AXJ33627.1|1831202_1832204_+	Proline dehydrogenase 1	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
AXJ33628.1|1832325_1832790_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
AXJ33629.1|1832802_1833984_-	Riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
AXJ33630.1|1833994_1834627_-	Riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
AXJ33631.1|1834633_1835677_-	Riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
AXJ33632.1|1836157_1837660_-	hypothetical protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
AXJ33633.1|1838182_1838497_+	Transcriptional repressor SdpR	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
AXJ33634.1|1838496_1839789_+	Arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AXJ33635.1|1839806_1840202_+	Arsenate-mycothiol transferase ArsC2	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
AXJ33636.1|1840496_1841351_-	Bifunctional autolysin precursor	NA	Q4ZCC7	Staphylococcus_virus	38.6	4.4e-39
AXJ33637.1|1841626_1841851_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ33638.1|1842049_1842520_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
AXJ33639.1|1842632_1843076_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ33640.1|1843062_1843506_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
AXJ33641.1|1843801_1844437_+|protease	CAAX amino terminal protease self- immunity	protease	NA	NA	NA	NA
AXJ33642.1|1844876_1845590_-	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AXJ33643.1|1845849_1846152_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ33644.1|1846407_1846773_+	Putative fluoride ion transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AXJ33645.1|1846769_1847123_+	Putative fluoride ion transporter CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
AXJ33646.1|1849205_1850039_-	Glyoxal reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
AXJ33647.1|1850250_1851159_-	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
AXJ33648.1|1851283_1852477_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AXJ33649.1|1852847_1854440_+	Phosphoenolpyruvate carboxykinase [ATP]	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AXJ33650.1|1854575_1855061_-	Transposase IS200 like protein	NA	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
AXJ33651.1|1855435_1856206_-	Prolyl oligopeptidase family protein	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.3e-142
AXJ33652.1|1856186_1856666_-	Putative 8-oxo-dGTP diphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	1.5e-84
AXJ33653.1|1856725_1856983_+	Putative membrane protein insertion efficiency factor	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AXJ33654.1|1856979_1857981_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
AXJ33655.1|1857985_1859464_-	2-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
AXJ33656.1|1859622_1860105_-	hypothetical protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	2.5e-79
AXJ33657.1|1860416_1861031_+	SPBc2 prophage-derived endonuclease YokF precursor	NA	A0A2H4PQM8	Staphylococcus_phage	87.3	9.5e-36
AXJ33658.1|1861111_1862107_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
AXJ33659.1|1862182_1862809_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
AXJ33660.1|1862849_1863194_+	hypothetical protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
AXJ33661.1|1863291_1863843_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
AXJ33662.1|1864060_1864702_-	hypothetical protein	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
AXJ33663.1|1865002_1865179_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ33664.1|1865189_1865573_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ33665.1|1866176_1866320_-	Transposase	NA	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
AXJ33666.1|1867189_1867567_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ33667.1|1868087_1872200_-	hypothetical protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
AXJ33668.1|1873049_1874249_-	EcoKI restriction-modification system protein HsdS	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
AXJ33669.1|1874241_1875798_-	Type I restriction enzyme EcoKI M protein	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
AXJ33670.1|1876160_1876880_-|protease	Serine protease SplF precursor	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
AXJ33671.1|1877030_1877747_-|protease	Serine protease SplE precursor	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
AXJ33672.1|1877904_1878624_-|protease	Serine protease SplD precursor	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AXJ33673.1|1878744_1879464_-|protease	Serine protease SplC precursor	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
AXJ33674.1|1879521_1880244_-|protease	Serine protease SplB precursor	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
AXJ33675.1|1880368_1881076_-|protease	Serine protease SplA precursor	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
AXJ33676.1|1882039_1882606_+	hypothetical protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
AXJ33677.1|1883079_1883778_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
AXJ33678.1|1883774_1884536_-	ABC-2 family transporter protein	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
AXJ33679.1|1884532_1885225_-	putative ABC transporter ATP-binding protein YxlF	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
AXJ33680.1|1885247_1886621_-	Thermophilic serine proteinase precursor	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
AXJ33681.1|1886630_1887149_-	Epidermin decarboxylase	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
AXJ33682.1|1887164_1888409_-	Nisin biosynthesis protein NisC	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
AXJ33683.1|1888401_1891395_-	hypothetical protein	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
AXJ33684.1|1891459_1891603_-	Lantibiotic gallidermin precursor	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
AXJ33685.1|1892724_1893708_-	Leucotoxin LukDv precursor	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
AXJ33686.1|1893709_1894645_-	Leucotoxin LukEv precursor	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
AXJ33687.1|1895528_1895984_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	1.7e-61
AXJ33688.1|1895996_1896785_+	hypothetical protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
