The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	2911773	398446	415700	2911773		Staphylococcus_phage(76.19%)	27	NA	NA
AXJ65805.1|398446_398638_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	1.1e-22
AXJ65806.1|398881_399178_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
AXJ65807.1|399198_399702_+	Single-stranded DNA-binding protein ssb	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
AXJ65808.1|399753_399996_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
AXJ65809.1|400227_400947_-	PemK-like protein	NA	Q4ZE81	Staphylococcus_phage	29.8	3.7e-23
AXJ65810.1|401059_402274_-	Tyrosine recombinase XerD	NA	Q4ZE80	Staphylococcus_phage	97.3	3.3e-221
AXJ65811.1|402434_403058_-	Helix-turn-helix domain protein	NA	NA	NA	NA	NA
AXJ65812.1|403206_403371_+	Helix-turn-helix domain protein	NA	NA	NA	NA	NA
AXJ65813.1|403371_403644_+	hypothetical protein	NA	Q4ZE77	Staphylococcus_phage	97.8	5.0e-45
AXJ65814.1|403655_403829_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ65815.1|403795_403999_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
AXJ65816.1|404000_404384_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	4.8e-62
AXJ65817.1|404384_404711_+	hypothetical protein	NA	Q4ZE75	Staphylococcus_phage	96.3	3.5e-53
AXJ65818.1|404775_405645_+	hypothetical protein	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	76.1	1.0e-131
AXJ65819.1|405656_407027_+	hypothetical protein	NA	A0A2H4JBE3	uncultured_Caudovirales_phage	95.0	2.4e-257
AXJ65820.1|407269_407626_+	hypothetical protein	NA	A0A2H4JBD4	uncultured_Caudovirales_phage	78.8	3.0e-50
AXJ65821.1|407627_407891_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ65822.1|407892_408534_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.4	2.5e-111
AXJ65823.1|409241_409586_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	91.7	1.3e-50
AXJ65824.1|409616_410270_+	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	99.5	7.6e-116
AXJ65825.1|410322_410850_+	hypothetical protein	NA	Q4ZE87	Staphylococcus_phage	99.4	2.0e-90
AXJ65826.1|410852_411194_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	98.2	1.1e-57
AXJ65827.1|411190_411760_+	Terminase small subunit	NA	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
AXJ65828.1|412036_413005_+	Abi-like protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	2.7e-24
AXJ65829.1|413182_413584_+	hypothetical protein	NA	A0A2H4J577	uncultured_Caudovirales_phage	59.1	5.1e-22
AXJ65830.1|413701_414214_+	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
AXJ65831.1|414527_415700_+	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 2
CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	2911773	765475	773296	2911773		Hokovirus(16.67%)	10	NA	NA
AXJ66143.1|765475_766531_-	Histidine protein kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
AXJ66144.1|766530_767217_-	Response regulator SaeR	NA	NA	NA	NA	NA
AXJ66145.1|767191_767665_-	DoxX	NA	NA	NA	NA	NA
AXJ66146.1|768007_768448_-	Electron transfer DM13	NA	NA	NA	NA	NA
AXJ66147.1|768727_769312_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ66148.1|769410_770124_-	7-carboxy-7-deazaguanine synthase	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AXJ66149.1|770127_770547_-	6-carboxy-5,6,7,8-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
AXJ66150.1|770548_771217_-	7-cyano-7-deazaguanine synthase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AXJ66151.1|771567_772161_+	Anthranilate synthase component 2	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AXJ66152.1|772144_773296_+	Aminodeoxychorismate synthase component 1	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 3
CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	2911773	788085	801748	2911773		uncultured_Caudovirales_phage(50.0%)	11	NA	NA
AXJ66163.1|788085_789003_-	Putative lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
AXJ66164.1|789381_790986_+	Transposase DDE domain protein	NA	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
AXJ66165.1|791112_792618_-	Di-/tripeptide transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AXJ66166.1|792958_793459_-	NADPH-dependent 7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AXJ66167.1|793478_794345_-	EamA-like transporter family protein	NA	NA	NA	NA	NA
AXJ66168.1|795145_795544_+	ribonucleotide reductase stimulatory protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AXJ66169.1|795506_797612_+	Ribonucleoside-diphosphate reductase subunit alpha 2	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AXJ66170.1|797729_798701_+	Ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AXJ66171.1|799033_800047_+	Fe(3+) dicitrate transport system permease protein FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.0	2.2e-138
AXJ66172.1|800033_800990_+	Iron-uptake system permease protein FeuC	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AXJ66173.1|800986_801748_+	putative siderophore transport system ATP-binding protein YusV	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 4
CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	2911773	852600	869562	2911773	integrase	Staphylococcus_phage(81.25%)	25	853972:853987	861370:861385
AXJ66218.1|852600_854973_+	Ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	3.3e-92
853972:853987	attL	GCAAATGAAACAGTTG	NA	NA	NA	NA
AXJ66219.1|854994_855459_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	98.7	1.6e-80
AXJ66220.1|856021_857128_-|integrase	Putative prophage phiRv2 integrase	integrase	H0UST3	Bacillus_phage	44.2	5.9e-76
AXJ66221.1|857133_857718_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ66222.1|857938_858145_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ66223.1|858180_858408_+	helix-turn-helix protein	NA	NA	NA	NA	NA
AXJ66224.1|858404_858578_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ66225.1|858544_858748_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
AXJ66226.1|858749_859133_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	3.3e-63
AXJ66227.1|859133_859457_+	hypothetical protein	NA	A0A1W6JQH0	Staphylococcus_phage	93.3	2.6e-40
AXJ66228.1|859501_861118_+	hypothetical protein	NA	A0A1W6JPF4	Staphylococcus_phage	78.1	3.0e-246
AXJ66229.1|861293_862097_+	hypothetical protein	NA	Q4ZE69	Staphylococcus_phage	97.0	3.1e-151
861370:861385	attR	CAACTGTTTCATTTGC	NA	NA	NA	NA
AXJ66230.1|862083_862356_+	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	100.0	3.2e-44
AXJ66231.1|862357_862999_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.5	2.1e-110
AXJ66232.1|863448_863790_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	98.2	4.2e-57
AXJ66233.1|863801_864380_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
AXJ66234.1|864397_864616_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ66235.1|864666_865194_+	hypothetical protein	NA	A0A1W6JQH7	Staphylococcus_phage	96.6	1.7e-86
AXJ66236.1|865196_865538_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
AXJ66237.1|865534_866104_+	Terminase small subunit	NA	Q4ZE85	Staphylococcus_phage	98.4	3.5e-101
AXJ66238.1|866318_866891_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ66239.1|866911_867208_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ66240.1|867207_867648_+	preprotein translocase subunit SecB	NA	NA	NA	NA	NA
AXJ66241.1|867953_868304_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ66242.1|868389_869562_+	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 5
CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	2911773	986074	1033464	2911773	capsid,protease,portal,tail,holin	Staphylococcus_phage(98.51%)	67	NA	NA
AXJ66351.1|986074_987247_+	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXJ66352.1|987503_988559_+	putative leukocidin-like protein 2 precursor	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
AXJ66353.1|988580_989597_+	putative leukocidin-like protein 1 precursor	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
AXJ66354.1|989834_990659_-	Phospholipase C precursor	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	6.8e-162
AXJ66355.1|990715_991753_-	Tyrosine recombinase XerC	NA	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
AXJ66356.1|991946_992651_-	PemK-like protein	NA	U5U4R0	Staphylococcus_phage	100.0	4.6e-127
AXJ66357.1|992790_992958_-	hypothetical protein	NA	U5U774	Staphylococcus_phage	100.0	1.7e-24
AXJ66358.1|993027_993213_-	hypothetical protein	NA	U5U7D6	Staphylococcus_phage	100.0	2.3e-25
AXJ66359.1|993209_993356_-	hypothetical protein	NA	A0A1X9H032	Staphylococcus_phage	100.0	3.3e-19
AXJ66360.1|993429_994284_-	HIRAN domain protein	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
AXJ66361.1|994295_995012_-	putative HTH-type transcriptional regulator	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
AXJ66362.1|995175_995418_+	hypothetical protein	NA	A0A1X9H035	Staphylococcus_phage	100.0	1.6e-39
AXJ66363.1|995430_995877_+	hypothetical protein	NA	A0A1W6JPI3	Staphylococcus_phage	100.0	1.9e-78
AXJ66364.1|995891_996032_+	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
AXJ66365.1|996024_996234_-	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
AXJ66366.1|996290_997040_+	Phage antirepressor protein KilAC domain protein	NA	A0A1W6JPN2	Staphylococcus_phage	99.6	2.0e-136
AXJ66367.1|997055_997253_+	hypothetical protein	NA	O80075	Staphylococcus_phage	100.0	2.5e-30
AXJ66368.1|997239_997620_-	hypothetical protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
AXJ66369.1|997674_997998_+	hypothetical protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
AXJ66370.1|997994_998156_+	hypothetical protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
AXJ66371.1|998250_998553_+	hypothetical protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
AXJ66372.1|998557_998818_+	hypothetical protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
AXJ66373.1|998826_999090_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
AXJ66374.1|999098_1001042_+	hypothetical protein	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
AXJ66375.1|1001043_1001964_+	recombination and repair protein RecT	NA	A0A2I6PDH5	Staphylococcus_phage	99.7	8.6e-166
AXJ66376.1|1002176_1002662_+	Beta-lactamase superfamily domain protein	NA	S4SWA4	Staphylococcus_phage	99.4	1.2e-86
AXJ66377.1|1002662_1003133_+	Single-stranded DNA-binding protein ssb	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
AXJ66378.1|1003162_1004056_+	Replication initiation and membrane attachment	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
AXJ66379.1|1004062_1004281_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
AXJ66380.1|1004289_1004694_+	Endodeoxyribonuclease RusA	NA	A0A075M042	Staphylococcus_phage	99.3	9.3e-72
AXJ66381.1|1004706_1005078_+	PVL ORF-50-like family protein	NA	A0A2I6PDG3	Staphylococcus_phage	91.1	1.4e-50
AXJ66382.1|1005077_1005335_+	hypothetical protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
AXJ66383.1|1005337_1005580_+	hypothetical protein	NA	A0A2H4PQJ3	Staphylococcus_phage	98.8	1.2e-39
AXJ66384.1|1005591_1005840_+	hypothetical protein	NA	Q8SDV5	Staphylococcus_phage	95.1	4.5e-37
AXJ66385.1|1005836_1006373_+	dUTPase	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
AXJ66386.1|1006409_1006655_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	97.5	4.2e-35
AXJ66387.1|1006651_1006858_+	hypothetical protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
AXJ66388.1|1006854_1007004_+	Transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AXJ66389.1|1007003_1007204_+	hypothetical protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
AXJ66390.1|1007231_1007648_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
AXJ66391.1|1007879_1008179_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
AXJ66392.1|1008309_1008654_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
AXJ66393.1|1008650_1010312_+	Phage Terminase	NA	Q8LTH3	Staphylococcus_phage	100.0	0.0e+00
AXJ66394.1|1010327_1011491_+|portal	Phage portal protein	portal	A0A1W6JPQ9	Staphylococcus_phage	100.0	1.8e-216
AXJ66395.1|1011474_1012212_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A1W6JPK0	Staphylococcus_phage	100.0	1.8e-129
AXJ66396.1|1012159_1013380_+|capsid	Phage capsid family protein	capsid	A0A075LYD8	Staphylococcus_phage	99.5	8.6e-230
AXJ66397.1|1013399_1013660_+	hypothetical protein	NA	A0A0H3U504	Staphylococcus_phage	100.0	6.4e-42
AXJ66398.1|1013660_1013957_+	hypothetical protein	NA	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.6e-47
AXJ66399.1|1013940_1014303_+	hypothetical protein	NA	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
AXJ66400.1|1014299_1014704_+	hypothetical protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
AXJ66401.1|1014700_1015108_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
AXJ66402.1|1015108_1015750_+	hypothetical protein	NA	A0A1W6JPP5	Staphylococcus_phage	100.0	1.1e-119
AXJ66403.1|1016066_1016417_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
AXJ66404.1|1016467_1016605_+	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
AXJ66405.1|1016661_1021173_+	Murein DD-endopeptidase MepM	NA	A0EX03	Staphylococcus_phage	88.0	0.0e+00
AXJ66406.1|1021169_1022654_+|tail	Phage tail protein	tail	A0A068A242	Staphylococcus_phage	98.8	4.6e-294
AXJ66407.1|1022669_1026455_+	hypothetical protein	NA	A0A1P8L6B8	Staphylococcus_phage	99.8	0.0e+00
AXJ66408.1|1026444_1026597_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
AXJ66409.1|1026643_1026931_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
AXJ66410.1|1027054_1027285_+	hypothetical protein	NA	D2JLG2	Staphylococcus_phage	100.0	1.2e-31
AXJ66411.1|1027822_1028077_+|holin	Bacteriophage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AXJ66412.1|1028088_1028844_+	putative cell wall hydrolase LytN precursor	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AXJ66413.1|1029034_1029526_+	Staphylokinase precursor	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
AXJ66414.1|1030214_1030511_+	Bacterial SH3 domain protein	NA	A0A1P8L6B4	Staphylococcus_phage	100.0	1.3e-51
AXJ66415.1|1030605_1031055_-	Chemotaxis inhibitory protein precursor	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
AXJ66416.1|1031738_1032089_+	Complement inhibitor precursor	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
AXJ66417.1|1033263_1033464_-	Phospholipase C precursor	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
>prophage 6
CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	2911773	1166681	1232375	2911773	protease,tRNA	Staphylococcus_phage(94.12%)	60	NA	NA
AXJ66535.1|1166681_1167470_-	hypothetical protein	NA	A0A2H4PQI0	Staphylococcus_phage	98.5	3.6e-144
AXJ66536.1|1167839_1167938_-	hypothetical protein	NA	A0A2H4PQI6	Staphylococcus_phage	100.0	1.4e-10
AXJ66537.1|1168833_1169769_+	Leucotoxin LukEv precursor	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
AXJ66538.1|1169770_1170754_+	Leucotoxin LukDv precursor	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
AXJ66539.1|1171123_1171915_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ66540.1|1171919_1172393_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ66541.1|1172648_1172867_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
AXJ66542.1|1173339_1173921_-	hypothetical protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
AXJ66543.1|1174070_1175243_+	Transposase, Mutator family	NA	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXJ66544.1|1176216_1176924_+|protease	Serine protease SplA precursor	protease	A0A2H4PQN3	Staphylococcus_phage	96.6	5.1e-126
AXJ66545.1|1177048_1177771_+|protease	Serine protease SplB precursor	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
AXJ66546.1|1177828_1178548_+|protease	Serine protease SplC precursor	protease	A0A2H4PQP7	Staphylococcus_phage	98.3	8.6e-129
AXJ66547.1|1178668_1179388_+|protease	Serine protease SplD precursor	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AXJ66548.1|1179545_1180265_+|protease	Serine protease SplF precursor	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
AXJ66549.1|1180625_1182182_+	putative type I restriction enzymeP M protein	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
AXJ66550.1|1182174_1183404_+	EcoKI restriction-modification system protein HsdS	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
AXJ66551.1|1183855_1184356_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ66552.1|1184943_1185036_+	hypothetical protein	NA	A0A2H4PQU1	Staphylococcus_phage	87.5	3.7e-05
AXJ66553.1|1185386_1185956_+	Integrase core domain protein	NA	A0A2I7SC85	Paenibacillus_phage	56.8	1.3e-55
AXJ66554.1|1186153_1186726_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
AXJ66555.1|1186826_1187168_-	hypothetical protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
AXJ66556.1|1187208_1187835_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
AXJ66557.1|1187909_1188905_-	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
AXJ66558.1|1188985_1189600_-	SPBc2 prophage-derived endonuclease YokF precursor	NA	A0A2H4PQM8	Staphylococcus_phage	93.1	1.1e-42
AXJ66559.1|1189911_1190394_+	hypothetical protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.8e-80
AXJ66560.1|1190552_1192031_+	2-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
AXJ66561.1|1192035_1193037_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
AXJ66562.1|1193033_1193291_-	Putative membrane protein insertion efficiency factor	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AXJ66563.1|1193350_1193830_+	Putative 8-oxo-dGTP diphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	3.0e-85
AXJ66564.1|1193810_1194581_+	Prolyl oligopeptidase family protein	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.5e-142
AXJ66565.1|1194958_1196551_-	Phosphoenolpyruvate carboxykinase [ATP]	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AXJ66566.1|1196922_1198119_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
AXJ66567.1|1198240_1199149_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
AXJ66568.1|1199360_1200194_+	Glyoxal reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
AXJ66569.1|1202190_1202544_-	Putative fluoride ion transporter CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	88.0	6.5e-13
AXJ66570.1|1202540_1202906_-	Putative fluoride ion transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AXJ66571.1|1203161_1203464_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ66572.1|1203723_1204437_+	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AXJ66573.1|1204876_1205512_-|protease	CAAX amino terminal protease self- immunity	protease	NA	NA	NA	NA
AXJ66574.1|1205807_1206251_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
AXJ66575.1|1206237_1206681_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ66576.1|1206793_1207264_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
AXJ66577.1|1207462_1207687_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ66578.1|1207962_1208817_+	Bifunctional autolysin precursor	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AXJ66579.1|1208903_1210196_-	Arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AXJ66580.1|1210195_1210510_-	Transcriptional repressor SdpR	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
AXJ66581.1|1211032_1212535_+	hypothetical protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
AXJ66582.1|1213015_1214059_+	Riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
AXJ66583.1|1214065_1214698_+	Riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
AXJ66584.1|1214708_1215890_+	Riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	2.1e-225
AXJ66585.1|1215902_1216367_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
AXJ66586.1|1216488_1217490_-	Proline dehydrogenase 1	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
AXJ66587.1|1217723_1218551_+	Phospholipase YtpA	NA	NA	NA	NA	NA
AXJ66588.1|1219122_1219524_+	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
AXJ66589.1|1219646_1220210_-	16S rRNA m(4)C1402 methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AXJ66590.1|1220206_1221160_-	coproporphyrinogen III oxidase	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AXJ66591.1|1221269_1222451_+	Multidrug resistance protein MdtH	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
AXJ66592.1|1222738_1225156_+|tRNA	Leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
AXJ66593.1|1225177_1225489_+	molybdopterin biosynthesis-like protein MoeZ	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
AXJ66594.1|1225814_1232375_+	Extracellular matrix-binding protein ebh precursor	NA	A0A2H4PQU6	Staphylococcus_phage	98.2	4.0e-305
>prophage 7
CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	2911773	1362266	1371309	2911773	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AXJ66703.1|1362266_1363271_+	Holliday junction ATP-dependent DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
AXJ66704.1|1363272_1364298_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AXJ66705.1|1364320_1365460_+|tRNA	Queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AXJ66706.1|1365478_1365739_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AXJ66707.1|1366013_1368293_+	bifunctional preprotein translocase subunit SecD/SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AXJ66708.1|1368495_1370769_+	Single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
AXJ66709.1|1370790_1371309_+	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 8
CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	2911773	1939823	1985535	2911773	portal,head,tail,holin	Staphylococcus_phage(75.36%)	72	NA	NA
AXJ67215.1|1939823_1941269_-	putative cell wall hydrolase LytN precursor	NA	Q4ZB16	Staphylococcus_virus	100.0	4.8e-296
AXJ67216.1|1941249_1941687_-|holin	Bacteriophage holin	holin	S4SVG2	Staphylococcus_phage	99.3	4.1e-73
AXJ67217.1|1941742_1942138_-	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	100.0	2.7e-68
AXJ67218.1|1942143_1943316_-	hypothetical protein	NA	A0A0N9BAZ1	Staphylococcus_phage	98.5	4.3e-194
AXJ67219.1|1943328_1945203_-	Bifunctional autolysin precursor	NA	Q4ZBP7	Staphylococcus_phage	100.0	0.0e+00
AXJ67220.1|1945339_1945639_-	hypothetical protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
AXJ67221.1|1945679_1945856_-	hypothetical protein	NA	Q8LTH6	Staphylococcus_phage	100.0	6.1e-28
AXJ67222.1|1945856_1946234_-	hypothetical protein	NA	Q8LTH7	Staphylococcus_phage	100.0	7.3e-55
AXJ67223.1|1946233_1948057_-	hypothetical protein	NA	M9NUJ5	Staphylococcus_phage	97.7	1.8e-292
AXJ67224.1|1948056_1949955_-	hypothetical protein	NA	A0A0H3U448	Staphylococcus_phage	98.4	0.0e+00
AXJ67225.1|1949967_1951854_-|tail	Prophage endopeptidase tail	tail	A0A0H3U2R3	Staphylococcus_phage	100.0	0.0e+00
AXJ67226.1|1951864_1952806_-|tail	Phage tail protein	tail	A0A2H4JFG3	uncultured_Caudovirales_phage	99.0	2.8e-180
AXJ67227.1|1952820_1955706_-	hypothetical protein	NA	A0A2H4JGV1	uncultured_Caudovirales_phage	95.3	0.0e+00
AXJ67228.1|1955709_1955994_-	hypothetical protein	NA	A0A0N7E0V9	Staphylococcus_phage	100.0	8.8e-45
AXJ67229.1|1956038_1956545_-	Phage protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
AXJ67230.1|1956611_1957169_-	hypothetical protein	NA	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
AXJ67231.1|1957169_1957595_-	hypothetical protein	NA	A0A0E3XBP2	Staphylococcus_phage	100.0	1.2e-74
AXJ67232.1|1957957_1958641_-	hypothetical protein	NA	W5RA17	Staphylococcus_phage	46.2	1.2e-42
AXJ67233.1|1958733_1959024_-	hypothetical protein	NA	A0A0E3XCY8	Staphylococcus_phage	98.8	3.8e-43
AXJ67234.1|1959010_1959346_-	hypothetical protein	NA	A7YGU9	Staphylococcus_virus	98.2	8.8e-60
AXJ67235.1|1959338_1959653_-|head,tail	Phage gp6-like head-tail connector protein	head,tail	Q4ZB38	Staphylococcus_virus	100.0	2.6e-53
AXJ67236.1|1959652_1959979_-	hypothetical protein	NA	Q4ZB39	Staphylococcus_virus	99.1	1.0e-52
AXJ67237.1|1959995_1960955_-	hypothetical protein	NA	Q4ZB40	Staphylococcus_virus	100.0	1.9e-179
AXJ67238.1|1960966_1961491_-	Phage minor structural protein GP20	NA	Q4ZB42	Staphylococcus_virus	100.0	2.9e-65
AXJ67239.1|1961588_1962551_-	NAD(+)--arginine ADP-ribosyltransferase EFV	NA	Q4ZB44	Staphylococcus_virus	99.7	4.6e-178
AXJ67240.1|1962507_1963926_-|portal	Phage portal protein, SPP1 Gp6-like	portal	R4IFL5	Staphylococcus_phage	99.4	4.3e-273
AXJ67241.1|1963939_1965148_-	Terminase-like family protein	NA	R4IG95	Staphylococcus_phage	100.0	6.1e-236
AXJ67242.1|1965140_1965635_-	Terminase small subunit	NA	R4IH30	Staphylococcus_phage	99.4	1.4e-74
AXJ67243.1|1965963_1966386_-	hypothetical protein	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
AXJ67244.1|1966409_1966556_-	hypothetical protein	NA	Q4ZBJ8	Staphylococcus_phage	100.0	7.5e-16
AXJ67245.1|1966556_1966733_-	Transcriptional activator RinB	NA	R4IFL3	Staphylococcus_phage	98.2	1.1e-21
AXJ67246.1|1966722_1966959_-	hypothetical protein	NA	A0A0N7E0U3	Staphylococcus_phage	97.4	1.8e-35
AXJ67247.1|1966983_1967220_-	hypothetical protein	NA	C8CH06	Staphylococcus_phage	98.7	2.4e-35
AXJ67248.1|1967256_1967799_-	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q4ZD81	Staphylococcus_virus	100.0	1.5e-96
AXJ67249.1|1967803_1968040_-	hypothetical protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
AXJ67250.1|1968032_1968341_-	hypothetical protein	NA	Q4ZD83	Staphylococcus_virus	100.0	6.2e-52
AXJ67251.1|1968337_1968685_-	YopX protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
AXJ67252.1|1968681_1969083_-	hypothetical protein	NA	Q4ZAC1	Staphylococcus_virus	100.0	1.1e-69
AXJ67253.1|1969095_1969338_-	hypothetical protein	NA	D2JGL2	Staphylococcus_phage	100.0	1.7e-41
AXJ67254.1|1969343_1969598_-	hypothetical protein	NA	D2JGL1	Staphylococcus_phage	100.0	1.3e-42
AXJ67255.1|1969683_1969869_-	hypothetical protein	NA	A0A0N9BBI1	Staphylococcus_phage	100.0	1.9e-27
AXJ67256.1|1969873_1970278_-	hypothetical protein	NA	A0A0H4ISQ5	Staphylococcus_phage	99.3	2.6e-66
AXJ67257.1|1970274_1970700_-	DNA N-6-adenine-methyltransferase (Dam)	NA	C8CGZ6	Staphylococcus_phage	100.0	4.7e-82
AXJ67258.1|1970709_1970931_-	hypothetical protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
AXJ67259.1|1970934_1971150_-	hypothetical protein	NA	Q4ZBU5	Staphylococcus_virus	100.0	4.8e-35
AXJ67260.1|1971146_1972388_-	Replicative DNA helicase	NA	M9NSS7	Staphylococcus_phage	99.8	5.7e-229
AXJ67261.1|1972384_1972741_-	hypothetical protein	NA	M9NS37	Staphylococcus_phage	100.0	8.2e-64
AXJ67262.1|1972740_1973496_-	Replication initiation and membrane attachment	NA	C8CGZ1	Staphylococcus_phage	100.0	3.8e-143
AXJ67263.1|1973488_1974163_-	hypothetical protein	NA	Q4ZCW9	Staphylococcus_virus	97.8	2.0e-127
AXJ67264.1|1974163_1974715_-	NUMOD4 motif protein	NA	A0A2H4PQR4	Staphylococcus_phage	100.0	1.6e-106
AXJ67265.1|1974725_1975151_-	Single-stranded DNA-binding protein ssb	NA	B7T0A5	Staphylococcus_virus	88.7	1.6e-58
AXJ67266.1|1975150_1975774_-	hypothetical protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
AXJ67267.1|1975766_1975988_-	hypothetical protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
AXJ67268.1|1975997_1976258_-	hypothetical protein	NA	Q4ZDR5	Staphylococcus_virus	98.8	5.8e-43
AXJ67269.1|1976351_1976513_-	hypothetical protein	NA	C8CGY5	Staphylococcus_phage	100.0	2.5e-20
AXJ67270.1|1976505_1976634_-	hypothetical protein	NA	C8CGY4	Staphylococcus_phage	100.0	7.3e-15
AXJ67271.1|1976692_1976923_+	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
AXJ67272.1|1976897_1977074_-	hypothetical protein	NA	S4SVC9	Staphylococcus_phage	96.6	2.4e-24
AXJ67273.1|1977089_1977842_-	Phage antirepressor protein KilAC domain protein	NA	A0A1X9H0A0	Staphylococcus_phage	99.6	4.3e-139
AXJ67274.1|1977843_1978029_-	helix-turn-helix protein	NA	S4SUN2	Staphylococcus_phage	100.0	1.7e-25
AXJ67275.1|1978468_1978678_+	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
AXJ67276.1|1978667_1978811_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
AXJ67277.1|1978825_1979269_-	hypothetical protein	NA	W5R971	Staphylococcus_phage	99.3	4.4e-75
AXJ67278.1|1979281_1979530_-	Helix-turn-helix domain protein	NA	A0A2K9VBT6	Staphylococcus_phage	100.0	1.7e-39
AXJ67279.1|1979693_1980017_+	Antitoxin PezA	NA	A0A0H3U2V8	Staphylococcus_phage	100.0	2.0e-53
AXJ67280.1|1980029_1980494_+	hypothetical protein	NA	A0A0N9BAX8	Staphylococcus_phage	100.0	8.4e-85
AXJ67281.1|1980525_1981206_+	PemK-like protein	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
AXJ67282.1|1981412_1982798_+	DNA-invertase hin	NA	I1W625	Staphylococcus_phage	100.0	2.5e-265
AXJ67283.1|1982914_1983088_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
AXJ67284.1|1983167_1983725_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ67285.1|1983851_1984991_+	hypothetical protein	NA	NA	NA	NA	NA
AXJ67286.1|1985052_1985535_-	Phosphopantetheine adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
>prophage 9
CP022905	Staphylococcus aureus strain 628 chromosome, complete genome	2911773	2748062	2758416	2911773		Streptococcus_phage(80.0%)	11	NA	NA
AXJ67997.1|2748062_2749667_+	Transposase DDE domain protein	NA	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
AXJ67998.1|2750387_2751047_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A1B0RXM8	Streptococcus_phage	100.0	3.1e-125
AXJ67999.1|2751157_2751514_-	hypothetical protein	NA	A0A1B0RXM3	Streptococcus_phage	99.2	4.2e-60
AXJ68000.1|2751537_2752110_-	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	NA	A0A1B0RXM1	Streptococcus_phage	99.5	5.5e-102
AXJ68001.1|2752385_2753180_-	Aminoglycoside 3'-phosphotransferase	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
AXJ68002.1|2753272_2753815_-	TDP-fucosamine acetyltransferase	NA	A0A1B0RXL7	Streptococcus_phage	100.0	8.9e-94
AXJ68003.1|2753811_2754720_-	Aminoglycoside 6-adenylyltransferase	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
AXJ68004.1|2754752_2755487_-	putative methyltransferase YcgJ	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
AXJ68005.1|2755467_2756337_-	Nucleotidyltransferase domain protein	NA	A0A1X9I6C9	Streptococcus_phage	95.8	4.3e-159
AXJ68006.1|2756439_2756685_-	hypothetical protein	NA	NA	NA	NA	NA
AXJ68007.1|2756811_2758416_-	Transposase DDE domain protein	NA	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
