The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	0	70033	4108026	tRNA,transposase,protease	Natrialba_phage(12.5%)	59	NA	NA
AXK04448.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AXK04449.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
AXK04450.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AXK04451.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXK04452.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AXK04453.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AXK04454.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AXK04455.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AXK04456.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AXK04457.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AXK04458.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AXK04459.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AXK04460.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AXK04461.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AXK07819.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AXK04462.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AXK04463.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
AXK04464.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK04465.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04466.1|28313_28649_-	CoA transferase	NA	NA	NA	NA	NA
AXK04467.1|28673_29108_-	hypothetical protein	NA	NA	NA	NA	NA
AXK04468.1|29140_30367_-	thiolase family protein	NA	NA	NA	NA	NA
AXK04469.1|30363_30861_-	dehydratase	NA	NA	NA	NA	NA
AXK07820.1|31068_31977_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK04470.1|32162_33005_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AXK04471.1|33047_34469_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AXK04472.1|34624_35575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04473.1|35571_36762_-	MFS transporter	NA	NA	NA	NA	NA
AXK04474.1|36948_37923_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AXK04475.1|37924_40063_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AXK04476.1|40059_40599_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AXK04477.1|40602_41331_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AXK04478.1|41317_42211_+	M48 family peptidase	NA	NA	NA	NA	NA
AXK04479.1|42281_42677_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AXK04480.1|42686_43217_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AXK04481.1|43661_44612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04482.1|45111_45747_+	hypothetical protein	NA	NA	NA	NA	NA
AXK04483.1|45718_45955_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AXK04484.1|46082_46976_+	AEC family transporter	NA	NA	NA	NA	NA
AXK04485.1|48145_49393_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AXK04486.1|49389_50004_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AXK04487.1|50139_51090_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04488.1|51132_52389_+	muropeptide transporter	NA	NA	NA	NA	NA
AXK04489.1|53620_54355_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AXK04490.1|54360_54951_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AXK04491.1|54975_55665_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXK04492.1|55661_56423_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK04493.1|56502_57402_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK04494.1|57495_58446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04495.1|59246_60473_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AXK04496.1|60472_60892_-	transcriptional regulator	NA	NA	NA	NA	NA
AXK04497.1|61075_62017_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07821.1|62440_63277_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK04498.1|63471_64053_-|protease	protease	protease	NA	NA	NA	NA
AXK04499.1|64065_64383_-	ferredoxin	NA	NA	NA	NA	NA
AXK04500.1|64486_65545_-	oxidoreductase	NA	NA	NA	NA	NA
AXK04501.1|65579_66851_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AXK04502.1|67480_68662_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK04503.1|69082_70033_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	77631	136103	4108026	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
AXK04510.1|77631_78582_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07823.1|78655_79600_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK04511.1|79596_81471_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AXK04512.1|82818_83523_-	DUF2837 family protein	NA	NA	NA	NA	NA
AXK04513.1|83519_84626_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AXK04514.1|84887_85481_-	sugar transferase	NA	NA	NA	NA	NA
AXK04515.1|85477_86710_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
AXK04516.1|86727_87987_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AXK04517.1|88010_89099_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AXK04518.1|89106_90207_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AXK04519.1|90210_90786_-	N-acetyltransferase	NA	NA	NA	NA	NA
AXK04520.1|90789_91842_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AXK04521.1|91972_92980_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AXK04522.1|92981_94268_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AXK04523.1|94284_94440_-	hypothetical protein	NA	NA	NA	NA	NA
AXK04524.1|94464_95268_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AXK04525.1|95264_96131_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AXK04526.1|96199_97336_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK04527.1|97335_98175_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AXK04528.1|99107_99710_+	hypothetical protein	NA	NA	NA	NA	NA
AXK04529.1|99739_100393_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK04530.1|100525_101782_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AXK04531.1|101784_102729_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AXK04532.1|102804_103080_+	DUF493 family protein	NA	NA	NA	NA	NA
AXK04533.1|103087_103750_+	octanoyltransferase	NA	NA	NA	NA	NA
AXK04534.1|103811_104813_+	lipoyl synthase	NA	NA	NA	NA	NA
AXK04535.1|104827_105376_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AXK04536.1|105433_106330_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AXK04537.1|106326_107388_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AXK04538.1|107423_108374_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK04539.1|109272_110466_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AXK04540.1|110547_111177_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
AXK04541.1|111238_111922_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AXK04542.1|111931_113614_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AXK07824.1|113901_114249_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AXK04543.1|114339_114657_+	hypothetical protein	NA	NA	NA	NA	NA
AXK04544.1|114939_115956_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK04545.1|116031_116832_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AXK04546.1|116828_117704_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AXK04547.1|117714_119007_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK04548.1|119049_120090_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AXK04549.1|120195_121017_-	phosphodiesterase	NA	NA	NA	NA	NA
AXK04550.1|121117_122068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04551.1|122166_123072_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
AXK04552.1|123068_123902_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXK07825.1|124738_125749_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
AXK07826.1|125745_126135_-	hypothetical protein	NA	NA	NA	NA	NA
AXK04553.1|127028_128282_+	amidase	NA	NA	NA	NA	NA
AXK04554.1|128372_130073_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AXK04555.1|130499_131147_-	hypothetical protein	NA	NA	NA	NA	NA
AXK04556.1|131145_132585_+	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
AXK04557.1|132677_132980_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
AXK04558.1|133007_133886_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK04559.1|135152_136103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	164870	225379	4108026	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AXK04580.1|164870_165821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04581.1|167264_168167_-	YgcG family protein	NA	NA	NA	NA	NA
AXK04582.1|168144_168774_-	LemA family protein	NA	NA	NA	NA	NA
AXK07829.1|169104_170487_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AXK04583.1|170520_171150_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AXK04584.1|171198_172806_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AXK04585.1|172830_173514_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07830.1|173595_174072_-	bacterioferritin	NA	NA	NA	NA	NA
AXK04586.1|174278_175229_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04587.1|176344_176872_+	META domain-containing protein	NA	NA	NA	NA	NA
AXK04588.1|176963_177779_+	META domain-containing protein	NA	NA	NA	NA	NA
AXK04589.1|177839_178574_+	sulfurtransferase	NA	NA	NA	NA	NA
AXK04590.1|178611_180690_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AXK04591.1|180939_181212_-	hypothetical protein	NA	NA	NA	NA	NA
AXK04592.1|181310_182399_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AXK04593.1|182402_184307_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AXK04594.1|184303_187978_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AXK04595.1|188038_188602_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AXK04596.1|188609_189032_-	glyoxalase	NA	NA	NA	NA	NA
AXK04597.1|189059_189479_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AXK07831.1|189507_189954_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AXK04598.1|190080_190578_+	hypothetical protein	NA	NA	NA	NA	NA
AXK04599.1|190732_193003_+	lysine decarboxylase	NA	NA	NA	NA	NA
AXK04600.1|193051_194284_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK04601.1|194381_195332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04602.1|195377_196070_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AXK04603.1|196066_196960_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AXK04604.1|197354_198455_+	aminomethyltransferase	NA	NA	NA	NA	NA
AXK04605.1|198536_198911_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AXK04606.1|198970_201835_+	glycine dehydrogenase (aminomethyl-transferring)	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AXK04607.1|201979_202720_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AXK04608.1|202789_204001_+	CoA transferase	NA	NA	NA	NA	NA
AXK04609.1|204029_204998_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK04610.1|205610_206561_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04611.1|206717_207041_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AXK04612.1|207145_208195_-	cyclase family protein	NA	NA	NA	NA	NA
AXK04613.1|208191_209016_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AXK04614.1|209016_209313_-	YciI family protein	NA	NA	NA	NA	NA
AXK04615.1|209338_209614_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
AXK04616.1|209670_210315_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AXK04617.1|210314_211001_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
AXK07832.1|211130_211982_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK04618.1|212032_212758_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK04619.1|212789_214139_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AXK04620.1|214250_215183_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
AXK04621.1|215640_218436_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AXK04622.1|219029_221972_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AXK04623.1|222043_222763_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AXK04624.1|222801_223350_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AXK04625.1|223504_224404_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AXK04626.1|224428_225379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	233310	301464	4108026	tRNA,transposase,protease	Bacillus_phage(20.0%)	57	NA	NA
AXK04634.1|233310_234261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04635.1|234347_235298_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK04636.1|235294_236245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04637.1|236342_237140_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK04638.1|238089_238500_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AXK04639.1|239521_240265_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK04640.1|240308_241352_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK04641.1|241522_243625_+	hypothetical protein	NA	NA	NA	NA	NA
AXK04642.1|245035_245992_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK04643.1|246010_246502_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AXK04644.1|246498_247854_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AXK04645.1|247854_248553_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AXK04646.1|248549_249251_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AXK04647.1|249503_250553_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AXK04648.1|250658_251600_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AXK04649.1|251596_253486_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AXK04650.1|253572_254211_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07833.1|254353_255598_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AXK04651.1|255669_256206_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AXK04652.1|256357_257749_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AXK04653.1|257765_258746_-	AEC family transporter	NA	NA	NA	NA	NA
AXK04654.1|258881_259865_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AXK04655.1|259929_260829_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK04656.1|260935_262690_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AXK04657.1|262697_263822_-	CoA transferase	NA	NA	NA	NA	NA
AXK04658.1|263835_264816_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK04659.1|267057_267603_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXK04660.1|267686_269306_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AXK04661.1|269321_270476_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AXK04662.1|270489_270615_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AXK04663.1|270611_272363_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AXK04664.1|272359_274039_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AXK04665.1|274074_274650_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AXK04666.1|275791_276070_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AXK04667.1|278330_278492_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AXK04668.1|278499_278640_+	hypothetical protein	NA	NA	NA	NA	NA
AXK04669.1|279158_279608_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AXK04670.1|279617_280229_-	glutathione S-transferase	NA	NA	NA	NA	NA
AXK04671.1|280387_281242_-	cytochrome c1	NA	NA	NA	NA	NA
AXK04672.1|281261_282644_-	cytochrome b	NA	NA	NA	NA	NA
AXK04673.1|282708_283350_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AXK04674.1|283489_283948_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AXK04675.1|283972_284749_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AXK04676.1|284802_285939_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AXK04677.1|285935_286886_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04678.1|286983_287610_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AXK04679.1|287632_288559_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AXK04680.1|288567_290154_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK04681.1|290150_291155_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AXK04682.1|291354_292215_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXK04683.1|292246_293248_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AXK04684.1|293318_294128_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXK04685.1|294205_296065_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AXK04686.1|296193_297396_-	MFS transporter	NA	NA	NA	NA	NA
AXK04687.1|297509_298391_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK04688.1|299893_300454_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AXK04689.1|300513_301464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	555255	614554	4108026	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AXK04898.1|555255_556206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04899.1|557529_558306_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AXK04900.1|558340_560113_+	M61 family peptidase	NA	NA	NA	NA	NA
AXK04901.1|560114_561017_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AXK04902.1|561141_561501_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AXK04903.1|561532_562495_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AXK04904.1|562593_563544_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04905.1|563556_564492_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AXK04906.1|564551_565391_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AXK04907.1|565387_566557_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
AXK04908.1|566553_567843_-	hypothetical protein	NA	NA	NA	NA	NA
AXK04909.1|567885_568260_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AXK04910.1|568365_569103_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AXK04911.1|569110_569815_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AXK04912.1|570078_571599_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AXK04913.1|571654_572218_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AXK04914.1|572236_573268_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AXK04915.1|573264_574053_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AXK04916.1|574228_575218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04917.1|576973_577924_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04918.1|579146_580049_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK04919.1|580050_580905_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AXK04920.1|580951_582061_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK04921.1|582071_582590_-	flavin reductase	NA	NA	NA	NA	NA
AXK04922.1|582619_583252_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AXK04923.1|583323_583983_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AXK04924.1|583979_585200_-	MFS transporter	NA	NA	NA	NA	NA
AXK04925.1|585468_586341_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AXK04926.1|586496_587234_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK07853.1|587236_588832_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AXK07854.1|588963_589953_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK04927.1|589949_590660_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK04928.1|590755_591772_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK04929.1|592043_592670_-	aminotransferase	NA	NA	NA	NA	NA
AXK04930.1|592725_593853_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AXK04931.1|593858_599576_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AXK04932.1|599859_600075_+	hypothetical protein	NA	NA	NA	NA	NA
AXK04933.1|600143_601088_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AXK04934.1|601276_602212_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AXK04935.1|602329_603901_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK04936.1|603980_605189_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK04937.1|605686_606604_+	DMT family transporter	NA	NA	NA	NA	NA
AXK04938.1|608964_609186_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
AXK04939.1|609516_610533_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK04940.1|610617_610869_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
AXK04941.1|610872_611688_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AXK04942.1|611800_612679_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AXK04943.1|612790_614554_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	620709	674448	4108026	transposase	Salmonella_phage(33.33%)	47	NA	NA
AXK04947.1|620709_621660_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04948.1|621728_622727_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK04949.1|622731_623412_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
AXK04950.1|623549_623942_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AXK04951.1|624049_625066_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK04952.1|625305_626091_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AXK04953.1|626185_627595_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
AXK04954.1|627605_628406_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AXK04955.1|628426_629197_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXK04956.1|629239_629707_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AXK04957.1|629703_630654_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04958.1|632602_633481_-	fatty acid desaturase	NA	NA	NA	NA	NA
AXK04959.1|634407_637386_-	hypothetical protein	NA	NA	NA	NA	NA
AXK04960.1|637738_638689_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04961.1|638685_639774_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
AXK04962.1|639809_640673_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AXK04963.1|641812_642202_-	DNA-binding protein	NA	NA	NA	NA	NA
AXK04964.1|642205_642988_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AXK04965.1|643021_643774_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK04966.1|644082_645222_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK04967.1|645218_646010_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AXK04968.1|646006_646756_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AXK04969.1|646752_647625_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK04970.1|647624_648626_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK04971.1|648622_649786_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AXK04972.1|649811_650495_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK04973.1|650448_651783_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AXK04974.1|651775_652870_+	CoA transferase	NA	NA	NA	NA	NA
AXK07855.1|653635_654586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK04975.1|656526_657786_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
AXK04976.1|657782_659321_+	SpoVR family protein	NA	NA	NA	NA	NA
AXK04977.1|659317_660514_-	MFS transporter	NA	NA	NA	NA	NA
AXK04978.1|660510_661902_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AXK04979.1|661898_662915_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK04980.1|662983_664219_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AXK04981.1|664319_665114_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK04982.1|665483_665891_+	GFA family protein	NA	NA	NA	NA	NA
AXK04983.1|666308_666581_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AXK04984.1|667162_668017_+	urease accessory protein UreD	NA	NA	NA	NA	NA
AXK04985.1|668117_668420_+	urease subunit gamma	NA	NA	NA	NA	NA
AXK04986.1|668446_669082_+	urease accessory protein UreJ	NA	NA	NA	NA	NA
AXK04987.1|669098_669407_+	urease subunit beta	NA	NA	NA	NA	NA
AXK04988.1|669403_671119_+	urease subunit alpha	NA	NA	NA	NA	NA
AXK04989.1|671121_671739_+	urease accessory protein UreE	NA	NA	NA	NA	NA
AXK04990.1|671839_672424_+	urease accessory protein UreF	NA	NA	NA	NA	NA
AXK04991.1|672448_673093_+	urease accessory protein UreG	NA	NA	NA	NA	NA
AXK04992.1|673497_674448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	723335	763334	4108026	integrase,tRNA,transposase,protease	Pseudomonas_phage(33.33%)	31	720634:720652	740522:740540
720634:720652	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AXK05029.1|723335_723983_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AXK05030.1|723979_724762_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AXK05031.1|724834_725926_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AXK05032.1|726205_727333_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AXK05033.1|727674_728721_+	Fic family protein	NA	NA	NA	NA	NA
AXK07858.1|728731_728872_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AXK05034.1|728868_731988_+	restriction endonuclease	NA	NA	NA	NA	NA
AXK05035.1|731989_734941_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AXK05036.1|734956_736168_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AXK05037.1|736164_736365_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05038.1|736351_737302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05039.1|737318_737813_+	DUF4276 family protein	NA	NA	NA	NA	NA
AXK05040.1|737816_738074_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05041.1|738098_739529_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AXK05042.1|739610_739895_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AXK05043.1|740678_741629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740522:740540	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AXK05044.1|742047_744612_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AXK05045.1|744656_746510_-	hypothetical protein	NA	NA	NA	NA	NA
AXK05046.1|746842_748414_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AXK05047.1|749854_750805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05048.1|750890_751631_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05049.1|751857_752805_-	hypothetical protein	NA	NA	NA	NA	NA
AXK05050.1|754192_755143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05051.1|755335_756151_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05052.1|756283_757723_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK05053.1|757736_758078_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AXK05054.1|758132_759788_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AXK05055.1|759939_760950_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK05056.1|761082_761856_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK05057.1|762199_762397_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05058.1|762383_763334_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	773261	821925	4108026	holin,transposase,protease	Bovine_alphaherpesvirus(10.0%)	47	NA	NA
AXK05066.1|773261_774212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05067.1|774349_775102_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AXK05068.1|775340_777065_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AXK05069.1|777084_778344_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXK05070.1|778358_779453_-	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AXK07862.1|779449_781576_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AXK05071.1|781588_782269_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AXK07863.1|782546_783920_+	MFS transporter	NA	NA	NA	NA	NA
AXK05072.1|783921_784941_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AXK05073.1|785004_785976_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05074.1|786040_786991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05075.1|787089_787932_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AXK05076.1|787931_788267_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AXK05077.1|788337_789756_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AXK05078.1|790035_791076_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AXK05079.1|791155_791407_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AXK05080.1|791517_792816_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AXK05081.1|792964_793819_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
AXK05082.1|793815_794706_+	acyltransferase	NA	NA	NA	NA	NA
AXK05083.1|794748_795660_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
AXK05084.1|795686_796379_+	DUF484 family protein	NA	NA	NA	NA	NA
AXK05085.1|796393_797374_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AXK05086.1|797386_799528_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AXK05087.1|799576_800545_-	nickel transporter	NA	NA	NA	NA	NA
AXK07864.1|800535_801159_-	DUF1007 family protein	NA	NA	NA	NA	NA
AXK05088.1|801164_802100_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK05089.1|802096_802993_-	metal ABC transporter permease	NA	NA	NA	NA	NA
AXK05090.1|802989_803712_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AXK05091.1|803702_803903_-	hypothetical protein	NA	NA	NA	NA	NA
AXK05092.1|804040_804544_+	transcriptional repressor	NA	NA	NA	NA	NA
AXK05093.1|804820_805936_+	GTP-binding protein	NA	NA	NA	NA	NA
AXK05094.1|806078_806543_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AXK05095.1|806690_807230_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
AXK05096.1|807251_808586_+	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AXK07865.1|808599_808905_-	RND transporter	NA	NA	NA	NA	NA
AXK05097.1|809329_809911_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
AXK05098.1|809991_810942_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05099.1|811040_811991_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05100.1|812088_813039_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05101.1|813479_814385_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK05102.1|814440_816048_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AXK05103.1|816301_817807_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AXK05104.1|817821_818286_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AXK05105.1|818575_819526_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05106.1|819688_820219_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05107.1|820218_820530_+	cell division protein ZapA	NA	NA	NA	NA	NA
AXK05108.1|820974_821925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	1006136	1108258	4108026	transposase	Bacillus_virus(25.0%)	93	NA	NA
AXK05248.1|1006136_1007087_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05249.1|1007189_1007852_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05250.1|1007954_1008365_-	hypothetical protein	NA	NA	NA	NA	NA
AXK05251.1|1008469_1009471_+	amidase	NA	NA	NA	NA	NA
AXK05252.1|1009473_1010670_+	CoA transferase	NA	NA	NA	NA	NA
AXK05253.1|1010690_1011494_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AXK05254.1|1011574_1011871_+	histidine kinase	NA	NA	NA	NA	NA
AXK05255.1|1011901_1012465_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK07878.1|1012505_1013363_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK05256.1|1013370_1014120_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AXK05257.1|1014141_1015014_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05258.1|1015042_1015822_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK05259.1|1015855_1016653_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05260.1|1018104_1019277_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AXK05261.1|1019307_1019700_+	RidA family protein	NA	NA	NA	NA	NA
AXK05262.1|1019693_1020554_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK05263.1|1020557_1021520_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK07879.1|1022296_1022986_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AXK05264.1|1023846_1024797_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05265.1|1025145_1026015_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05266.1|1026085_1026781_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AXK05267.1|1026770_1027280_+	nucleoside deaminase	NA	NA	NA	NA	NA
AXK05268.1|1027276_1028497_+	MFS transporter	NA	NA	NA	NA	NA
AXK05269.1|1028444_1029347_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
AXK05270.1|1030232_1031519_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK05271.1|1031557_1032931_+	amidase	NA	NA	NA	NA	NA
AXK05272.1|1032969_1033671_-	riboflavin synthase	NA	NA	NA	NA	NA
AXK05273.1|1033969_1034959_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK05274.1|1035059_1035521_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AXK05275.1|1035536_1036085_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AXK05276.1|1036226_1037702_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AXK05277.1|1037807_1038899_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AXK05278.1|1038902_1039685_-	ABC transporter permease	NA	NA	NA	NA	NA
AXK05279.1|1039694_1040483_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AXK05280.1|1041608_1042043_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AXK05281.1|1042039_1043050_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AXK05282.1|1043093_1044020_-	VOC family protein	NA	NA	NA	NA	NA
AXK05283.1|1044306_1044675_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AXK07880.1|1044890_1045841_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07881.1|1045822_1048312_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AXK05284.1|1048360_1049053_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AXK05285.1|1049125_1050325_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AXK05286.1|1050342_1051248_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05287.1|1051363_1052293_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK05288.1|1052318_1053665_+	MFS transporter	NA	NA	NA	NA	NA
AXK07882.1|1053692_1054442_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AXK05289.1|1054455_1055238_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK05290.1|1055430_1056381_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05291.1|1056442_1057588_-	porin	NA	NA	NA	NA	NA
AXK05292.1|1058064_1058901_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AXK05293.1|1058970_1059936_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05294.1|1059932_1060883_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05295.1|1061267_1061810_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05296.1|1062845_1063796_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05297.1|1064037_1064406_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05298.1|1064451_1065576_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07883.1|1066710_1067451_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK05299.1|1067554_1068175_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05300.1|1068277_1069228_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK05301.1|1069224_1071333_-	AsmA family protein	NA	NA	NA	NA	NA
AXK05302.1|1071477_1072137_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AXK07884.1|1072168_1072633_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AXK05303.1|1072908_1073094_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05304.1|1073145_1073898_-	DNA-binding protein	NA	NA	NA	NA	NA
AXK05305.1|1073904_1075167_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
AXK05306.1|1075208_1076447_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK05307.1|1077523_1078651_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AXK05308.1|1078661_1079489_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AXK05309.1|1079475_1080342_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AXK05310.1|1081708_1082113_-	hypothetical protein	NA	NA	NA	NA	NA
AXK05311.1|1082204_1083155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07885.1|1083523_1084435_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK05312.1|1084449_1085160_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05313.1|1085156_1086401_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AXK05314.1|1086402_1086837_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AXK05315.1|1086865_1087171_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AXK05316.1|1087268_1088219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05317.1|1088275_1089424_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
AXK05318.1|1089504_1090455_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05319.1|1090985_1091783_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK05320.1|1091830_1092484_-	ABC transporter permease	NA	NA	NA	NA	NA
AXK05321.1|1092440_1093529_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AXK05322.1|1093693_1095919_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
AXK05323.1|1098196_1099093_+	inositol monophosphatase	NA	NA	NA	NA	NA
AXK05324.1|1098981_1099227_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05325.1|1099213_1100164_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05326.1|1100160_1101852_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AXK05327.1|1101913_1103110_+	amidohydrolase	NA	NA	NA	NA	NA
AXK05328.1|1103123_1104002_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05329.1|1104108_1105155_+	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
AXK05330.1|1105218_1105629_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AXK05331.1|1105639_1107112_+	magnesium transporter	NA	NA	NA	NA	NA
AXK05332.1|1107307_1108258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	1130549	1201517	4108026	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AXK05356.1|1130549_1131500_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05357.1|1131556_1132669_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
AXK05358.1|1135052_1136003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05359.1|1136592_1137369_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AXK05360.1|1137486_1137750_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AXK05361.1|1137850_1138855_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AXK05362.1|1139055_1140657_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AXK05363.1|1140682_1141441_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AXK05364.1|1141532_1142189_-	adenylate kinase	NA	NA	NA	NA	NA
AXK05365.1|1142279_1143044_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AXK05366.1|1143053_1143242_-	Trm112 family protein	NA	NA	NA	NA	NA
AXK05367.1|1143297_1144341_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AXK05368.1|1144337_1144751_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AXK05369.1|1144747_1145368_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AXK05370.1|1145648_1146599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05371.1|1146766_1148158_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AXK05372.1|1148230_1148809_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AXK05373.1|1148925_1150323_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AXK05374.1|1150438_1151644_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AXK05375.1|1151743_1152262_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AXK05376.1|1152356_1152602_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AXK05377.1|1152829_1153144_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AXK05378.1|1153233_1158423_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AXK07886.1|1158419_1160588_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AXK05379.1|1160607_1162959_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AXK05380.1|1162963_1164283_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
AXK05381.1|1164301_1165975_+	MCE family protein	NA	NA	NA	NA	NA
AXK05382.1|1165979_1166648_+	lipoprotein	NA	NA	NA	NA	NA
AXK05383.1|1166804_1170626_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AXK05384.1|1170956_1171907_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05385.1|1171928_1173074_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK05386.1|1173222_1174152_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK05387.1|1174148_1175237_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AXK05388.1|1175233_1176037_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AXK05389.1|1176033_1176765_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AXK05390.1|1176822_1178112_-	MFS transporter	NA	NA	NA	NA	NA
AXK05391.1|1178208_1178811_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05392.1|1183364_1183703_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AXK05393.1|1184371_1184677_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05394.1|1186382_1187333_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05395.1|1187329_1188661_-	MFS transporter	NA	NA	NA	NA	NA
AXK05396.1|1189900_1191922_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AXK05397.1|1191914_1192556_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AXK05398.1|1192552_1192960_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AXK05399.1|1192956_1193757_+	SURF1 family protein	NA	NA	NA	NA	NA
AXK05400.1|1193831_1194536_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK05401.1|1194567_1195362_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AXK05402.1|1195358_1196309_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05403.1|1196407_1197358_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK05404.1|1197455_1197890_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AXK05405.1|1197972_1200309_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AXK05406.1|1200500_1201517_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
>prophage 12
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	1248910	1329780	4108026	tRNA,transposase	Bacillus_virus(28.57%)	58	NA	NA
AXK05445.1|1248910_1249861_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK05446.1|1249857_1250808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05447.1|1251067_1252096_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AXK05448.1|1252175_1253474_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AXK05449.1|1253470_1254052_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AXK05450.1|1254364_1258411_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AXK05451.1|1266308_1267259_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05452.1|1268397_1268871_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05453.1|1269010_1269631_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXK05454.1|1269766_1270567_+	aldolase	NA	NA	NA	NA	NA
AXK05455.1|1270621_1271713_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK05456.1|1271734_1272178_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AXK05457.1|1272206_1272839_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AXK05458.1|1272949_1273366_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AXK05459.1|1273358_1274051_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
AXK05460.1|1274157_1274532_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05461.1|1274608_1275418_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05462.1|1275513_1276458_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
AXK05463.1|1276496_1277468_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK05464.1|1277558_1277996_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
AXK05465.1|1278054_1278936_-	NRDE family protein	NA	NA	NA	NA	NA
AXK05466.1|1279939_1280800_+	amidohydrolase	NA	NA	NA	NA	NA
AXK05467.1|1280832_1282215_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
AXK07891.1|1282211_1283231_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK05468.1|1283603_1284098_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK05469.1|1284105_1284846_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05470.1|1284926_1286531_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
AXK05471.1|1286570_1287380_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	1.6e-22
AXK05472.1|1287484_1289650_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
AXK05473.1|1290530_1291343_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AXK05474.1|1291355_1291664_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05475.1|1291781_1293512_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK05476.1|1293513_1294659_-	hypothetical protein	NA	NA	NA	NA	NA
AXK05477.1|1294788_1295457_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
AXK05478.1|1295578_1296046_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AXK05479.1|1296181_1297564_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AXK05480.1|1297560_1298685_+	DNA repair exonuclease	NA	NA	NA	NA	NA
AXK05481.1|1298681_1301318_+	GTP-binding protein	NA	NA	NA	NA	NA
AXK05482.1|1301733_1302684_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05483.1|1306430_1307042_-	DUF2239 family protein	NA	NA	NA	NA	NA
AXK05484.1|1307264_1308725_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AXK05485.1|1308821_1310414_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AXK05486.1|1310400_1310679_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05487.1|1310737_1311025_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXK05488.1|1311026_1312367_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AXK05489.1|1312462_1313152_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05490.1|1313164_1314595_+	MFS transporter	NA	NA	NA	NA	NA
AXK05491.1|1316319_1317141_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05492.1|1317151_1318723_+	amidohydrolase	NA	NA	NA	NA	NA
AXK05493.1|1318751_1319729_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK05494.1|1319755_1320559_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AXK05495.1|1320555_1321350_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK05496.1|1321357_1322593_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AXK05497.1|1322585_1323020_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AXK05498.1|1323768_1324719_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05499.1|1325340_1327068_-	STAS domain-containing protein	NA	NA	NA	NA	NA
AXK05500.1|1327179_1328538_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AXK05501.1|1328829_1329780_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	1743117	1800394	4108026	tRNA,transposase	Klosneuvirus(13.33%)	51	NA	NA
AXK05855.1|1743117_1744068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05856.1|1744165_1746766_-	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AXK05857.1|1746872_1747877_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK05858.1|1747985_1749326_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AXK05859.1|1749366_1750395_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05860.1|1750590_1751136_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05861.1|1751132_1751693_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AXK05862.1|1751791_1752742_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05863.1|1752779_1753367_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AXK05864.1|1753384_1753768_-	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AXK05865.1|1755127_1756420_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AXK05866.1|1756554_1757595_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AXK05867.1|1757692_1758709_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK05868.1|1758976_1759624_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
AXK05869.1|1759749_1760508_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AXK07912.1|1760582_1761272_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AXK05870.1|1761289_1762174_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AXK05871.1|1762170_1762950_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AXK05872.1|1762976_1763654_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07913.1|1763942_1764695_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05873.1|1764813_1766214_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AXK05874.1|1766237_1766636_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AXK05875.1|1766811_1767012_+	copper chaperone	NA	NA	NA	NA	NA
AXK05876.1|1767150_1767879_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AXK05877.1|1768012_1769428_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AXK05878.1|1769431_1770295_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AXK05879.1|1770307_1771057_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AXK05880.1|1771239_1773255_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AXK07914.1|1773236_1773785_-	arylesterase	NA	NA	NA	NA	NA
AXK05881.1|1773861_1774581_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AXK05882.1|1774679_1775630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05883.1|1775778_1776117_-	BON domain-containing protein	NA	NA	NA	NA	NA
AXK05884.1|1776174_1776336_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AXK05885.1|1776367_1776568_-	CsbD family protein	NA	NA	NA	NA	NA
AXK05886.1|1776833_1779407_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AXK05887.1|1779477_1782051_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AXK05888.1|1784577_1785066_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AXK07915.1|1785157_1786309_-	N-acetyltransferase	NA	NA	NA	NA	NA
AXK05889.1|1786362_1787184_+	DUF455 family protein	NA	NA	NA	NA	NA
AXK05890.1|1787222_1788452_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AXK05891.1|1788580_1789021_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AXK05892.1|1788965_1789145_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05893.1|1789131_1790082_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05894.1|1790078_1790552_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AXK05895.1|1790713_1791652_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05896.1|1791653_1792862_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AXK05897.1|1792966_1793473_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AXK05898.1|1793475_1796337_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AXK05899.1|1796326_1797292_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AXK05900.1|1797351_1799346_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AXK05901.1|1799443_1800394_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	1851642	1910909	4108026	tRNA,transposase,protease	Klosneuvirus(40.0%)	51	NA	NA
AXK05947.1|1851642_1852593_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05948.1|1852716_1853526_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXK05949.1|1853725_1854676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05950.1|1855949_1857167_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
AXK05951.1|1858223_1859126_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05952.1|1859202_1860075_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AXK05953.1|1860205_1860574_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AXK05954.1|1860631_1861678_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AXK05955.1|1861873_1863130_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AXK05956.1|1863134_1864472_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
AXK05957.1|1864621_1865578_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK05958.1|1865680_1866613_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
AXK05959.1|1866728_1867049_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05960.1|1867050_1867401_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05961.1|1867448_1869023_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK05962.1|1869075_1870020_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK05963.1|1870037_1870868_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK05964.1|1870860_1872495_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AXK05965.1|1872491_1873847_+	amidase	NA	NA	NA	NA	NA
AXK05966.1|1874753_1876331_+	lipoprotein	NA	NA	NA	NA	NA
AXK05967.1|1876334_1877609_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07917.1|1877706_1878081_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05968.1|1879796_1880930_+	general secretion pathway protein	NA	NA	NA	NA	NA
AXK05969.1|1880967_1881573_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AXK05970.1|1881569_1882388_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05971.1|1882459_1885084_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AXK05972.1|1885070_1885325_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AXK05973.1|1885391_1885973_-	hypothetical protein	NA	NA	NA	NA	NA
AXK05974.1|1886276_1886537_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AXK05975.1|1886702_1887326_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AXK05976.1|1887325_1888099_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AXK05977.1|1888095_1889304_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AXK05978.1|1889329_1889803_-	RidA family protein	NA	NA	NA	NA	NA
AXK05979.1|1889876_1890827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05980.1|1890925_1891876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK05981.1|1891973_1893323_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AXK05982.1|1894088_1894844_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AXK05983.1|1894936_1897819_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AXK05984.1|1898141_1898567_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AXK05985.1|1898594_1899743_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AXK05986.1|1899739_1900246_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK05987.1|1900252_1901548_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AXK05988.1|1901588_1902893_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AXK05989.1|1902894_1903533_+	hypothetical protein	NA	NA	NA	NA	NA
AXK05990.1|1903535_1904696_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AXK05991.1|1904722_1906078_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AXK05992.1|1906081_1907152_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AXK05993.1|1907290_1907527_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AXK05994.1|1907614_1908721_+	GTPase HflX	NA	NA	NA	NA	NA
AXK05995.1|1908686_1909991_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AXK05996.1|1910009_1910909_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 15
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	1921149	1964421	4108026	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
AXK06004.1|1921149_1922100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06005.1|1922086_1922287_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06006.1|1922299_1923385_+	AI-2E family transporter	NA	NA	NA	NA	NA
AXK06007.1|1923400_1924162_-	ABC transporter permease	NA	NA	NA	NA	NA
AXK06008.1|1924158_1925082_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AXK06009.1|1925180_1925705_-	N-acetyltransferase	NA	NA	NA	NA	NA
AXK06010.1|1925713_1926457_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AXK06011.1|1926552_1926792_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06012.1|1926805_1926958_-	lipoprotein	NA	NA	NA	NA	NA
AXK06013.1|1927043_1928534_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AXK06014.1|1928625_1929564_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AXK06015.1|1929560_1929737_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AXK06016.1|1929739_1930402_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AXK07919.1|1932023_1932167_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AXK06017.1|1932163_1933138_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06018.1|1933304_1934255_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06019.1|1934251_1935526_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AXK06020.1|1935623_1936823_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AXK06021.1|1936819_1937473_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK06022.1|1937469_1938906_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AXK06023.1|1938893_1939253_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AXK06024.1|1940225_1941176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06025.1|1941273_1942224_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06026.1|1942220_1944086_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AXK07920.1|1944343_1945864_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AXK06027.1|1945951_1946602_-	flavodoxin family protein	NA	NA	NA	NA	NA
AXK06028.1|1947550_1948846_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AXK06029.1|1948867_1949752_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK07921.1|1949850_1950726_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AXK06030.1|1950715_1951072_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AXK06031.1|1951145_1952177_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK06032.1|1952306_1952486_-	DUF3008 family protein	NA	NA	NA	NA	NA
AXK06033.1|1952583_1953108_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AXK06034.1|1953118_1953955_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK06035.1|1954067_1954439_+	transcriptional regulator	NA	NA	NA	NA	NA
AXK06036.1|1954435_1954987_+	ATPase	NA	NA	NA	NA	NA
AXK06037.1|1955002_1956694_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AXK06038.1|1956742_1957423_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06039.1|1957670_1958135_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06040.1|1958304_1959234_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AXK06041.1|1959246_1959894_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06042.1|1959967_1961785_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AXK06043.1|1961868_1962819_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06044.1|1963470_1964421_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	1994200	2058566	4108026	transposase	Vibrio_phage(20.0%)	51	NA	NA
AXK06073.1|1994200_1995151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06074.1|1995371_1996322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06075.1|1996420_1997386_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK06076.1|1997523_1998423_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06077.1|2001017_2002505_+	hypothetical protein	NA	NA	NA	NA	NA
AXK06078.1|2002515_2003712_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AXK06079.1|2003784_2005104_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AXK06080.1|2005100_2005976_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK06081.1|2006006_2007176_-	CoA transferase	NA	NA	NA	NA	NA
AXK06082.1|2007172_2007487_-	ferredoxin	NA	NA	NA	NA	NA
AXK06083.1|2007508_2008231_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK06084.1|2008230_2009049_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXK06085.1|2009053_2009581_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AXK06086.1|2009586_2010852_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AXK06087.1|2011201_2012341_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK06088.1|2012418_2013291_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK06089.1|2014160_2015111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06090.1|2015070_2015706_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06091.1|2016065_2017388_-	isocitrate lyase	NA	NA	NA	NA	NA
AXK07924.1|2017616_2018528_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AXK06092.1|2019952_2020525_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AXK06093.1|2020564_2022394_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
AXK06094.1|2022356_2023415_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
AXK06095.1|2023452_2023914_-	holo-ACP synthase	NA	NA	NA	NA	NA
AXK06096.1|2023998_2024745_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AXK06097.1|2026235_2029466_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AXK06098.1|2029532_2030864_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXK06099.1|2031116_2031491_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK06100.1|2031593_2032772_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
AXK06101.1|2032782_2033373_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AXK07925.1|2033483_2034290_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06102.1|2034315_2035110_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AXK06103.1|2036110_2037085_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK06104.1|2037243_2037756_-	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AXK06105.1|2037912_2038884_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK06106.1|2040628_2041435_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXK07926.1|2041431_2042568_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AXK06107.1|2042683_2043448_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06108.1|2043561_2044332_-	spermidine synthase	NA	NA	NA	NA	NA
AXK06109.1|2044416_2045628_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AXK06110.1|2045676_2046051_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AXK06111.1|2046151_2047414_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AXK06112.1|2047410_2048268_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
AXK06113.1|2048440_2049442_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK06114.1|2049893_2050844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06115.1|2052358_2053558_+	MFS transporter	NA	NA	NA	NA	NA
AXK06116.1|2053926_2054163_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AXK06117.1|2054226_2054394_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AXK06118.1|2054507_2056403_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AXK06119.1|2056566_2057517_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06120.1|2057615_2058566_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	2184018	2268566	4108026	tRNA,transposase	Moraxella_phage(28.57%)	57	NA	NA
AXK06220.1|2184018_2185035_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK06221.1|2185428_2186721_-	aspartate kinase	NA	NA	NA	NA	NA
AXK06222.1|2186793_2187828_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
AXK06223.1|2187888_2188839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06224.1|2188936_2189902_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
AXK06225.1|2189938_2190583_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
AXK06226.1|2190602_2192063_-|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
AXK06227.1|2192302_2192986_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AXK07933.1|2193114_2193624_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
AXK06228.1|2193616_2194393_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
AXK06229.1|2194600_2195464_-	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
AXK06230.1|2195488_2197075_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.0	1.9e-35
AXK06231.1|2197201_2197984_-	inositol monophosphatase	NA	NA	NA	NA	NA
AXK06232.1|2198091_2198868_+	RNA methyltransferase	NA	NA	NA	NA	NA
AXK06233.1|2199085_2200078_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK06234.1|2200179_2200998_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06235.1|2201011_2201845_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AXK06236.1|2201950_2202901_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06237.1|2203005_2204037_+	peptidase C45	NA	NA	NA	NA	NA
AXK06238.1|2204050_2207674_-	5-oxoprolinase	NA	NA	NA	NA	NA
AXK06239.1|2207752_2208265_-	transcriptional regulator	NA	NA	NA	NA	NA
AXK06240.1|2209439_2210141_+	hypothetical protein	NA	NA	NA	NA	NA
AXK06241.1|2210161_2211127_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK06242.1|2211140_2211632_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AXK06243.1|2213077_2214163_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK06244.1|2214169_2214670_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AXK06245.1|2215987_2217742_-	filamentous hemagglutinin transporter protein FhaC	NA	NA	NA	NA	NA
AXK07934.1|2217734_2218832_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
AXK06246.1|2218845_2221467_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
AXK06247.1|2221529_2222354_-	molecular chaperone	NA	NA	NA	NA	NA
AXK06248.1|2222513_2222951_-	protein FimA	NA	NA	NA	NA	NA
AXK06249.1|2223026_2233799_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	32.5	3.6e-29
AXK06250.1|2234225_2234855_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK06251.1|2234863_2238580_+	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
AXK06252.1|2238623_2239499_-	EAL domain-containing protein	NA	NA	NA	NA	NA
AXK06253.1|2239632_2240466_-	putative hydro-lyase	NA	NA	NA	NA	NA
AXK06254.1|2240484_2241834_-	amidase	NA	NA	NA	NA	NA
AXK06255.1|2245019_2245970_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06256.1|2246086_2246806_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06257.1|2246978_2247965_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK06258.1|2247965_2248448_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AXK06259.1|2248451_2249735_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AXK06260.1|2249731_2250670_+	CoA ester lyase	NA	NA	NA	NA	NA
AXK06261.1|2250666_2252376_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AXK06262.1|2252385_2253633_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AXK07935.1|2255243_2256533_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AXK06263.1|2257670_2258444_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AXK06264.1|2259105_2259849_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK06265.1|2259923_2260664_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06266.1|2260859_2261696_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AXK06267.1|2261746_2262517_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AXK06268.1|2262566_2263619_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AXK06269.1|2263615_2264242_-	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AXK06270.1|2264238_2265285_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AXK06271.1|2265451_2266468_+	folate-binding protein	NA	NA	NA	NA	NA
AXK06272.1|2266566_2267517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07936.1|2267615_2268566_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	2275038	2345058	4108026	tRNA,transposase	Bacillus_virus(16.67%)	60	NA	NA
AXK06277.1|2275038_2275989_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06278.1|2276973_2277747_-	ABC transporter permease	NA	NA	NA	NA	NA
AXK06279.1|2277743_2278742_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK06280.1|2278826_2279603_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AXK06281.1|2279758_2281426_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AXK06282.1|2281743_2282937_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AXK06283.1|2282924_2283548_+	hypothetical protein	NA	NA	NA	NA	NA
AXK06284.1|2283544_2285446_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AXK06285.1|2285494_2286289_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXK06286.1|2286301_2287303_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AXK06287.1|2287299_2287806_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AXK06288.1|2287798_2288647_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AXK06289.1|2288744_2289287_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06290.1|2289330_2290281_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06291.1|2290435_2290762_-	cation:proton antiporter	NA	NA	NA	NA	NA
AXK06292.1|2290758_2291043_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AXK06293.1|2291039_2291519_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AXK06294.1|2291515_2293144_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AXK06295.1|2293140_2293485_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AXK06296.1|2293484_2296418_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AXK06297.1|2297576_2298527_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06298.1|2298625_2298922_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06299.1|2299028_2299946_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06300.1|2299950_2300664_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK06301.1|2300677_2301649_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK06302.1|2303368_2303749_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06303.1|2303752_2304940_+	MFS transporter	NA	NA	NA	NA	NA
AXK06304.1|2305378_2306101_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AXK06305.1|2306394_2307345_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06306.1|2307341_2307770_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07937.1|2309171_2310134_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK06307.1|2310249_2311203_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06308.1|2311212_2312205_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK06309.1|2312256_2313012_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK06310.1|2313076_2313766_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK06311.1|2313987_2314938_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
AXK06312.1|2314968_2316165_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AXK07938.1|2316161_2316935_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK07939.1|2317002_2317974_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK06313.1|2318059_2319004_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06314.1|2318981_2319851_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AXK06315.1|2320094_2320718_+	glutathione S-transferase	NA	NA	NA	NA	NA
AXK06316.1|2321032_2321332_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK06317.1|2321345_2324420_-	autotransporter SphB2	NA	NA	NA	NA	NA
AXK06318.1|2324549_2325224_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK06319.1|2325216_2327031_+	histidine kinase	NA	NA	NA	NA	NA
AXK06320.1|2327084_2328032_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06321.1|2328136_2329087_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06322.1|2329639_2331265_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AXK07940.1|2331314_2332349_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AXK06323.1|2332351_2333698_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07941.1|2333694_2335209_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AXK06324.1|2335199_2336210_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AXK06325.1|2336683_2337625_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AXK06326.1|2337633_2338602_-	AAA family ATPase	NA	NA	NA	NA	NA
AXK06327.1|2340141_2341110_+	transporter	NA	NA	NA	NA	NA
AXK06328.1|2341287_2342277_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK06329.1|2342323_2343082_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK06330.1|2343271_2344009_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AXK06331.1|2344107_2345058_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	2389115	2442228	4108026	transposase	Ectocarpus_siliculosus_virus(11.11%)	50	NA	NA
AXK06362.1|2389115_2390066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06363.1|2390085_2390991_-	pirin family protein	NA	NA	NA	NA	NA
AXK06364.1|2391068_2391767_-	pirin family protein	NA	NA	NA	NA	NA
AXK07944.1|2391926_2392871_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06365.1|2392880_2394371_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AXK06366.1|2394367_2395435_-	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AXK06367.1|2395498_2396911_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AXK06368.1|2397096_2398317_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AXK06369.1|2398338_2399289_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06370.1|2399387_2400038_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
AXK06371.1|2400155_2401958_+	EAL domain-containing protein	NA	NA	NA	NA	NA
AXK06372.1|2401835_2403575_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AXK06373.1|2403609_2404515_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06374.1|2404696_2406073_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AXK06375.1|2406239_2406980_-	ribonuclease PH	NA	NA	NA	NA	NA
AXK06376.1|2407116_2408043_+	YicC family protein	NA	NA	NA	NA	NA
AXK06377.1|2408315_2408471_+	hypothetical protein	NA	NA	NA	NA	NA
AXK06378.1|2408483_2408612_+	hypothetical protein	NA	NA	NA	NA	NA
AXK06379.1|2408608_2408893_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK06380.1|2408951_2410442_-	AMP nucleosidase	NA	NA	NA	NA	NA
AXK06381.1|2410686_2411286_+	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AXK06382.1|2411290_2412061_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK06383.1|2412298_2413012_+	cytochrome C	NA	NA	NA	NA	NA
AXK06384.1|2413008_2413926_+	cytochrome C	NA	NA	NA	NA	NA
AXK06385.1|2414046_2414694_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AXK06386.1|2414735_2414939_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AXK06387.1|2414963_2417243_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AXK06388.1|2417255_2417984_-	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AXK06389.1|2417980_2418640_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AXK06390.1|2418708_2419461_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AXK06391.1|2419642_2420593_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06392.1|2421484_2422390_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AXK06393.1|2422401_2423529_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
AXK06394.1|2423617_2424232_-	fimbrial protein	NA	NA	NA	NA	NA
AXK06395.1|2424890_2426078_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AXK07945.1|2426074_2428672_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AXK06396.1|2428926_2429142_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
AXK06397.1|2429597_2430152_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AXK06398.1|2430419_2430980_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AXK06399.1|2431091_2432396_+	peptidase	NA	NA	NA	NA	NA
AXK06400.1|2432392_2433904_+	thiol oxidoreductase	NA	NA	NA	NA	NA
AXK06401.1|2434009_2435011_+	aminopeptidase	NA	NA	NA	NA	NA
AXK06402.1|2434991_2436113_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AXK06403.1|2436210_2437161_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06404.1|2437157_2437784_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AXK07946.1|2437849_2438695_+	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AXK06405.1|2438798_2439398_+	hypothetical protein	NA	NA	NA	NA	NA
AXK06406.1|2439394_2440159_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AXK06407.1|2440228_2441179_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06408.1|2441277_2442228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	2455540	2507905	4108026	tRNA,transposase,protease	Planktothrix_phage(15.38%)	55	NA	NA
AXK06415.1|2455540_2456491_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06416.1|2456588_2456990_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AXK06417.1|2457062_2457641_-|protease	protease	protease	NA	NA	NA	NA
AXK06418.1|2457758_2458247_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AXK06419.1|2458260_2459193_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AXK06420.1|2459230_2460118_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AXK06421.1|2460275_2461970_+	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AXK06422.1|2461986_2463243_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AXK06423.1|2463380_2463926_-	acyl dehydratase	NA	NA	NA	NA	NA
AXK06424.1|2463957_2465517_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AXK06425.1|2465645_2466398_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AXK06426.1|2466419_2467112_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK06427.1|2467134_2467926_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK06428.1|2467952_2468858_-	agmatinase	NA	NA	NA	NA	NA
AXK06429.1|2469050_2469887_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06430.1|2469978_2471001_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AXK06431.1|2471137_2472190_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AXK06432.1|2472194_2473385_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AXK06433.1|2473387_2473867_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AXK06434.1|2474052_2474532_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AXK06435.1|2474539_2474776_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06436.1|2474795_2475197_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AXK06437.1|2475199_2475451_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AXK06438.1|2475505_2476387_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AXK06439.1|2476611_2477058_+	GFA family protein	NA	NA	NA	NA	NA
AXK06440.1|2477142_2478207_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AXK06441.1|2478343_2478925_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AXK06442.1|2479159_2480290_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AXK06443.1|2480467_2481694_+	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AXK06444.1|2481752_2482268_+	transporter	NA	NA	NA	NA	NA
AXK06445.1|2482290_2482617_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AXK06446.1|2482650_2483841_+	NAD-dependent formate dehydrogenase	NA	NA	NA	NA	NA
AXK06447.1|2483914_2484319_+	GFA family protein	NA	NA	NA	NA	NA
AXK06448.1|2484535_2485486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06449.1|2485583_2486354_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AXK06450.1|2486350_2487022_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AXK06451.1|2487018_2487660_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AXK06452.1|2487672_2488593_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AXK06453.1|2488753_2489914_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK06454.1|2489955_2490906_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
AXK06455.1|2491504_2491729_+	hypothetical protein	NA	NA	NA	NA	NA
AXK06456.1|2491893_2493588_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AXK06457.1|2493709_2493979_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AXK06458.1|2494094_2494493_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AXK06459.1|2494503_2495460_-	glutathione synthetase	NA	NA	NA	NA	NA
AXK06460.1|2495596_2496142_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AXK06461.1|2496162_2498112_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AXK06462.1|2498499_2499276_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK06463.1|2499281_2499674_+	hypothetical protein	NA	NA	NA	NA	NA
AXK06464.1|2500094_2501045_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06465.1|2501041_2502139_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AXK06466.1|2502170_2503121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06467.1|2504901_2506143_-	MFS transporter	NA	NA	NA	NA	NA
AXK06468.1|2506154_2506928_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AXK06469.1|2506954_2507905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	2512804	2566244	4108026	tRNA,transposase	Planktothrix_phage(28.57%)	49	NA	NA
AXK06474.1|2512804_2513617_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AXK06475.1|2513620_2515324_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AXK06476.1|2515374_2516505_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AXK06477.1|2516691_2517768_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AXK07947.1|2517849_2518500_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AXK06478.1|2518514_2519948_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AXK06479.1|2520201_2521020_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK06480.1|2521016_2521721_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AXK06481.1|2522620_2523736_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06482.1|2523769_2524144_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06483.1|2524166_2525324_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AXK06484.1|2525336_2525570_-	lipoprotein	NA	NA	NA	NA	NA
AXK06485.1|2526204_2529174_-	formate dehydrogenase	NA	NA	NA	NA	NA
AXK06486.1|2529188_2529398_-	formate dehydrogenase	NA	NA	NA	NA	NA
AXK06487.1|2529549_2530179_-	molecular chaperone	NA	NA	NA	NA	NA
AXK06488.1|2530175_2532293_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AXK06489.1|2532289_2532970_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AXK06490.1|2532966_2533527_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AXK06491.1|2533533_2534631_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AXK06492.1|2534768_2535377_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AXK06493.1|2535373_2536666_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AXK06494.1|2536679_2537222_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AXK06495.1|2537231_2538068_-	M48 family peptidase	NA	NA	NA	NA	NA
AXK06496.1|2538101_2539163_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AXK06497.1|2539204_2540257_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AXK06498.1|2540272_2540575_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06499.1|2540716_2541667_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06500.1|2541845_2543540_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AXK06501.1|2543536_2544622_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AXK06502.1|2544669_2545569_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06503.1|2545579_2546224_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AXK06504.1|2547245_2550488_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AXK07948.1|2550498_2551596_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AXK06505.1|2551858_2552842_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AXK06506.1|2552939_2553890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06507.1|2553987_2554938_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06508.1|2555036_2555987_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06509.1|2555996_2556686_-	VIT family protein	NA	NA	NA	NA	NA
AXK06510.1|2556745_2557183_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AXK06511.1|2557228_2558122_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AXK06512.1|2558169_2559342_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXK06513.1|2559338_2560493_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AXK06514.1|2560689_2561040_-	RnfH family protein	NA	NA	NA	NA	NA
AXK06515.1|2561029_2561464_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
AXK06516.1|2561480_2562431_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06517.1|2562578_2563046_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AXK06518.1|2563026_2564184_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AXK06519.1|2564249_2565176_-	paraslipin	NA	NA	NA	NA	NA
AXK06520.1|2565293_2566244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	2837566	2903145	4108026	tRNA,transposase	Oenococcus_phage(33.33%)	53	NA	NA
AXK06736.1|2837566_2838517_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06737.1|2838614_2839565_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06738.1|2839766_2840756_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AXK07967.1|2840839_2841193_+	hypothetical protein	NA	NA	NA	NA	NA
AXK06739.1|2841270_2841879_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06740.1|2843552_2844131_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
AXK06741.1|2844155_2845109_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK06742.1|2845148_2846066_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK06743.1|2846187_2847114_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06744.1|2847121_2847868_-	aldolase	NA	NA	NA	NA	NA
AXK07968.1|2848194_2849136_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
AXK06745.1|2849211_2849334_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06746.1|2849362_2851060_-	sodium:proline symporter	NA	NA	NA	NA	NA
AXK06747.1|2851494_2852916_-	MFS transporter	NA	NA	NA	NA	NA
AXK06748.1|2853069_2853849_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK07969.1|2853973_2854846_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06749.1|2854957_2856082_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
AXK06750.1|2856127_2857090_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK06751.1|2857082_2857937_+	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA	NA
AXK06752.1|2858044_2858455_+	VOC family protein	NA	NA	NA	NA	NA
AXK06753.1|2858451_2859402_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK06754.1|2859499_2860381_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AXK06755.1|2860458_2861838_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
AXK06756.1|2861876_2862722_-	FTR1 family iron permease	NA	NA	NA	NA	NA
AXK06757.1|2862737_2863082_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
AXK06758.1|2863084_2863621_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06759.1|2863793_2864369_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AXK06760.1|2864471_2865209_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
AXK06761.1|2865276_2866914_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AXK06762.1|2867021_2867777_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
AXK06763.1|2867764_2868727_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AXK06764.1|2868828_2869629_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AXK06765.1|2869690_2871766_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AXK06766.1|2871930_2874306_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
AXK06767.1|2874386_2875742_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AXK06768.1|2877218_2877941_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK06769.1|2877995_2878979_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK06770.1|2879108_2880059_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06771.1|2880055_2880958_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06772.1|2881045_2881804_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK06773.1|2881816_2882965_-	cell division protein ZapE	NA	NA	NA	NA	NA
AXK06774.1|2883005_2884433_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AXK06775.1|2884662_2885877_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AXK06776.1|2885922_2888793_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AXK06777.1|2891203_2891692_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AXK06778.1|2891817_2894514_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AXK06779.1|2894668_2896951_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AXK06780.1|2897115_2897748_+	fimbrial protein	NA	NA	NA	NA	NA
AXK06781.1|2897846_2898797_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06782.1|2898843_2899398_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AXK06783.1|2899465_2900311_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AXK06784.1|2900380_2901349_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXK06785.1|2901348_2903145_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	2920715	2981655	4108026	holin,tRNA,transposase	Catovirus(22.22%)	50	NA	NA
AXK06796.1|2920715_2922236_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AXK06797.1|2922278_2922581_+	hypothetical protein	NA	NA	NA	NA	NA
AXK06798.1|2922577_2923210_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06799.1|2923288_2925154_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AXK06800.1|2925150_2925966_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AXK06801.1|2925973_2927089_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK06802.1|2927993_2928872_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK06803.1|2928871_2929696_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AXK06804.1|2929863_2930814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06805.1|2930996_2933876_+	EAL domain-containing protein	NA	NA	NA	NA	NA
AXK06806.1|2933857_2934634_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK06807.1|2934726_2936190_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AXK06808.1|2936186_2936558_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AXK06809.1|2936575_2937889_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
AXK06810.1|2937925_2938384_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AXK06811.1|2938495_2939446_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06812.1|2939544_2940495_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06813.1|2940491_2941505_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AXK06814.1|2941644_2942631_+	homoserine kinase	NA	NA	NA	NA	NA
AXK06815.1|2942674_2943475_+	hypothetical protein	NA	NA	NA	NA	NA
AXK06816.1|2944277_2945228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06817.1|2945378_2945981_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
AXK06818.1|2945999_2946632_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
AXK06819.1|2946869_2948756_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AXK06820.1|2948774_2949617_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AXK06821.1|2949613_2950972_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AXK06822.1|2951192_2951987_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXK06823.1|2952217_2953711_-	exopolyphosphatase	NA	NA	NA	NA	NA
AXK06824.1|2953946_2956028_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AXK06825.1|2956222_2957263_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AXK06826.1|2957397_2958414_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AXK06827.1|2958435_2959293_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
AXK07970.1|2959337_2960114_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AXK06828.1|2960480_2961431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06829.1|2961457_2961922_-	barstar family protein 2	NA	NA	NA	NA	NA
AXK06830.1|2963128_2965417_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AXK06831.1|2965533_2966406_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06832.1|2966448_2967603_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AXK06833.1|2967637_2968468_-	transglycosylase	NA	NA	NA	NA	NA
AXK06834.1|2968551_2970096_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AXK06835.1|2970138_2970498_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06836.1|2970499_2970913_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AXK06837.1|2970953_2971271_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AXK06838.1|2971355_2972072_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07971.1|2972335_2973757_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
AXK06839.1|2973823_2976571_-	pertactin autotransporter	NA	NA	NA	NA	NA
AXK06840.1|2976903_2977920_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK07972.1|2978255_2978897_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AXK06841.1|2978987_2980424_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AXK06842.1|2980581_2981655_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
>prophage 24
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	2986541	3059039	4108026	tRNA,transposase	Pseudomonas_phage(14.29%)	58	NA	NA
AXK06847.1|2986541_2987558_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK06848.1|2988495_2989923_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AXK06849.1|2989919_2990942_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AXK06850.1|2990931_2991405_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AXK06851.1|2991530_2992433_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AXK06852.1|2992429_2994073_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AXK06853.1|2997005_2997638_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AXK06854.1|2997646_2998036_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AXK06855.1|2998088_2999141_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AXK06856.1|3000004_3001711_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AXK06857.1|3001784_3002285_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AXK06858.1|3002299_3004357_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AXK06859.1|3004383_3004677_-	response regulator	NA	NA	NA	NA	NA
AXK06860.1|3004778_3005726_-	motility protein MotB	NA	NA	NA	NA	NA
AXK06861.1|3005738_3006614_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AXK06862.1|3006734_3007295_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AXK06863.1|3007329_3007653_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
AXK06864.1|3008088_3008826_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AXK06865.1|3009124_3010075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06866.1|3010318_3010582_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AXK06867.1|3010655_3010937_+	hypothetical protein	NA	NA	NA	NA	NA
AXK06868.1|3010953_3011814_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AXK06869.1|3011810_3012146_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06870.1|3012199_3012850_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AXK06871.1|3014530_3015475_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06872.1|3015520_3015838_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06873.1|3015840_3016779_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AXK06874.1|3016956_3017442_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXK06875.1|3017460_3018009_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AXK06876.1|3018285_3019419_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK06877.1|3019456_3020164_+	glutathione transferase	NA	NA	NA	NA	NA
AXK07973.1|3020318_3022667_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AXK06878.1|3022663_3023602_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
AXK06879.1|3023627_3024818_+	acetate kinase	NA	NA	NA	NA	NA
AXK06880.1|3024814_3025588_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AXK06881.1|3025617_3026811_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AXK06882.1|3026928_3027939_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AXK06883.1|3027956_3029993_-	transketolase	NA	NA	NA	NA	NA
AXK06884.1|3030187_3030928_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AXK06885.1|3031025_3031976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06886.1|3032018_3033194_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
AXK06887.1|3033415_3035206_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AXK06888.1|3035218_3036880_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AXK06889.1|3036892_3039598_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AXK06890.1|3039890_3041645_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AXK06891.1|3041641_3042268_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK06892.1|3042264_3043116_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AXK06893.1|3043191_3045306_+	M3 family peptidase	NA	NA	NA	NA	NA
AXK06894.1|3045456_3046107_+	SCO family protein	NA	NA	NA	NA	NA
AXK06895.1|3046252_3046504_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AXK06896.1|3046573_3047956_-	multidrug transporter	NA	NA	NA	NA	NA
AXK06897.1|3047952_3051132_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AXK07974.1|3051939_3052857_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06898.1|3052908_3053640_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AXK06899.1|3053699_3054272_+	chorismate lyase	NA	NA	NA	NA	NA
AXK06900.1|3055780_3056797_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK06901.1|3056934_3057984_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AXK06902.1|3058088_3059039_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	3078439	3143376	4108026	transposase	Bacillus_phage(18.18%)	60	NA	NA
AXK06916.1|3078439_3079390_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06917.1|3079488_3080073_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
AXK06918.1|3080107_3081097_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AXK06919.1|3081093_3082035_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AXK06920.1|3082031_3083252_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AXK06921.1|3083294_3083609_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AXK06922.1|3083800_3084160_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AXK06923.1|3084161_3085892_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AXK06924.1|3086064_3086736_-	(d)CMP kinase	NA	NA	NA	NA	NA
AXK06925.1|3086750_3088079_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AXK06926.1|3088075_3088975_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AXK06927.1|3089061_3090147_-	prephenate dehydratase	NA	NA	NA	NA	NA
AXK06928.1|3090139_3091273_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AXK06929.1|3091272_3093954_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AXK06930.1|3094324_3094906_+	OmpA family protein	NA	NA	NA	NA	NA
AXK06931.1|3094983_3095757_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AXK06932.1|3095753_3096431_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AXK06933.1|3096646_3097828_+	MFS transporter	NA	NA	NA	NA	NA
AXK06934.1|3098331_3098562_+	hypothetical protein	NA	NA	NA	NA	NA
AXK06935.1|3098600_3098783_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AXK06936.1|3098812_3099763_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07977.1|3099892_3100285_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AXK06937.1|3100561_3101473_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AXK06938.1|3101597_3102572_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK06939.1|3102568_3103519_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06940.1|3103616_3104702_-	DNA polymerase IV	NA	NA	NA	NA	NA
AXK06941.1|3104799_3105210_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AXK06942.1|3105825_3107739_+	S9 family peptidase	NA	NA	NA	NA	NA
AXK06943.1|3107874_3110487_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
AXK06944.1|3110488_3111223_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AXK06945.1|3111386_3112568_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
AXK06946.1|3112564_3112777_+	hypothetical protein	NA	NA	NA	NA	NA
AXK06947.1|3112773_3113754_-	aldo/keto reductase	NA	NA	NA	NA	NA
AXK06948.1|3113799_3114627_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AXK06949.1|3114773_3116591_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AXK06950.1|3116645_3117029_+	ferredoxin	NA	NA	NA	NA	NA
AXK06951.1|3117025_3117976_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06952.1|3118086_3118338_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06953.1|3118531_3118747_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06954.1|3118843_3119962_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AXK06955.1|3120081_3120294_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06956.1|3120453_3120675_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06957.1|3120727_3121678_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06958.1|3122854_3124225_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AXK06959.1|3124257_3125049_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06960.1|3125061_3126117_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
AXK06961.1|3126142_3127018_-	amidohydrolase	NA	NA	NA	NA	NA
AXK06962.1|3127123_3127372_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06963.1|3127406_3128861_-	carboxylase	NA	NA	NA	NA	NA
AXK06964.1|3128857_3129379_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AXK06965.1|3129407_3130760_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AXK06966.1|3130983_3133872_-	HD domain-containing protein	NA	NA	NA	NA	NA
AXK06967.1|3136016_3137318_+	phospholipase	NA	NA	NA	NA	NA
AXK06968.1|3137332_3138049_-	flagellar brake protein	NA	NA	NA	NA	NA
AXK06969.1|3138330_3139011_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AXK06970.1|3139022_3139190_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06971.1|3139298_3139451_-	hypothetical protein	NA	NA	NA	NA	NA
AXK06972.1|3139538_3140198_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AXK06973.1|3140578_3142429_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AXK06974.1|3142425_3143376_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	3152988	3203301	4108026	holin,transposase	Acidithiobacillus_phage(33.33%)	41	NA	NA
AXK06984.1|3152988_3153939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06985.1|3154037_3154988_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK06986.1|3155128_3156346_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AXK06987.1|3156339_3156951_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AXK06988.1|3157584_3158562_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AXK06989.1|3158705_3159452_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AXK06990.1|3159473_3159920_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AXK06991.1|3160707_3162939_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AXK06992.1|3162961_3163762_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK06993.1|3164043_3165276_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AXK06994.1|3165386_3166376_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK06995.1|3166406_3167795_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AXK06996.1|3169393_3170377_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK06997.1|3170573_3171590_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AXK06998.1|3171786_3172611_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK06999.1|3172688_3173612_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AXK07000.1|3173692_3174934_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AXK07001.1|3174967_3175969_+	peptidase M14	NA	NA	NA	NA	NA
AXK07002.1|3176097_3177069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK07003.1|3177093_3179178_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AXK07004.1|3179244_3180237_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK07978.1|3180345_3181680_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AXK07005.1|3181705_3183718_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
AXK07979.1|3183714_3185763_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AXK07006.1|3185866_3186514_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AXK07007.1|3186654_3187149_+	azurin	NA	NA	NA	NA	NA
AXK07008.1|3187192_3187864_-	transcriptional regulator	NA	NA	NA	NA	NA
AXK07009.1|3187878_3189372_-	TolC family protein	NA	NA	NA	NA	NA
AXK07010.1|3189368_3192482_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AXK07011.1|3192494_3193601_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXK07012.1|3193724_3194393_-	transcriptional regulator	NA	NA	NA	NA	NA
AXK07013.1|3194613_3195564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07014.1|3195646_3197605_+|holin	high-affinity choline transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AXK07015.1|3197632_3198334_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK07980.1|3198480_3199296_+	diacylglycerol kinase	NA	NA	NA	NA	NA
AXK07016.1|3199292_3200108_+	metallophosphoesterase	NA	NA	NA	NA	NA
AXK07017.1|3200124_3200928_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AXK07018.1|3200911_3201346_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXK07019.1|3201342_3201777_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AXK07981.1|3201778_3202378_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXK07020.1|3202350_3203301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	3236046	3305048	4108026	transposase	Klosneuvirus(16.67%)	56	NA	NA
AXK07048.1|3236046_3236997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07049.1|3236993_3238013_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AXK07050.1|3238022_3240731_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AXK07051.1|3240878_3241535_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AXK07052.1|3241633_3242584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07053.1|3242689_3243625_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AXK07054.1|3243824_3245519_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AXK07055.1|3245553_3246480_+	VOC family protein	NA	NA	NA	NA	NA
AXK07982.1|3246548_3247646_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07056.1|3247664_3248528_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AXK07057.1|3248539_3249322_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK07058.1|3249318_3250437_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AXK07059.1|3250433_3251966_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AXK07060.1|3252006_3253014_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AXK07061.1|3253158_3253881_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK07062.1|3253896_3254919_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AXK07063.1|3255235_3255970_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK07064.1|3256054_3257800_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AXK07065.1|3257796_3258549_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK07066.1|3258593_3259550_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK07067.1|3259638_3260205_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07068.1|3260212_3261073_-	D-amino-acid transaminase	NA	NA	NA	NA	NA
AXK07069.1|3261102_3261846_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AXK07070.1|3261862_3262546_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXK07071.1|3263383_3264298_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK07072.1|3264362_3265271_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK07073.1|3265361_3266786_-	TolC family protein	NA	NA	NA	NA	NA
AXK07074.1|3266787_3268110_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXK07075.1|3268106_3270245_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AXK07076.1|3270322_3275443_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AXK07077.1|3275629_3275809_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07078.1|3275891_3276479_+	toxin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
AXK07079.1|3276494_3277976_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AXK07080.1|3278030_3279884_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK07081.1|3280146_3281484_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AXK07082.1|3281518_3283516_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
AXK07083.1|3283533_3285582_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AXK07084.1|3285712_3286579_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK07085.1|3286847_3287813_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AXK07086.1|3287927_3289076_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AXK07087.1|3289500_3289812_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AXK07088.1|3289845_3290106_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AXK07089.1|3290255_3291389_+	GTPase ObgE	NA	NA	NA	NA	NA
AXK07090.1|3291459_3292596_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AXK07091.1|3292761_3293556_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK07092.1|3293618_3294062_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK07093.1|3294177_3295128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07094.1|3295114_3295303_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07095.1|3295250_3295658_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXK07096.1|3295730_3297926_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
AXK07097.1|3298146_3299097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07098.1|3299056_3299581_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AXK07099.1|3299712_3300684_+	FecR family protein	NA	NA	NA	NA	NA
AXK07100.1|3300803_3303248_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AXK07101.1|3303263_3303854_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AXK07102.1|3304097_3305048_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	3320492	3420604	4108026	terminase,tail,tRNA,transposase	uncultured_Caudovirales_phage(13.79%)	109	NA	NA
AXK07116.1|3320492_3321443_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07117.1|3322174_3322552_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AXK07118.1|3322536_3323238_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07119.1|3323381_3324074_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AXK07120.1|3324073_3325177_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AXK07121.1|3325286_3327659_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AXK07122.1|3327655_3329215_+	chaperone SurA	NA	NA	NA	NA	NA
AXK07123.1|3329239_3330037_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
AXK07124.1|3330068_3331214_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AXK07125.1|3331318_3332761_+	pyruvate kinase	NA	NA	NA	NA	NA
AXK07983.1|3332763_3333852_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07126.1|3336130_3337081_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07127.1|3337067_3337286_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07128.1|3338210_3338768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK07129.1|3338743_3339094_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07130.1|3339262_3340057_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AXK07131.1|3340053_3341103_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AXK07132.1|3341102_3341792_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AXK07133.1|3341878_3342376_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AXK07134.1|3342407_3343724_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
AXK07135.1|3343740_3344715_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AXK07136.1|3344751_3345210_-	protein TolR	NA	NA	NA	NA	NA
AXK07137.1|3345209_3345890_-	protein TolQ	NA	NA	NA	NA	NA
AXK07138.1|3345892_3346321_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AXK07139.1|3346373_3348104_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AXK07140.1|3348169_3348742_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AXK07984.1|3348722_3349409_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXK07141.1|3349764_3350436_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AXK07142.1|3350442_3350643_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07985.1|3350985_3351267_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07143.1|3351263_3351797_-	DUF2514 family protein	NA	NA	NA	NA	NA
AXK07144.1|3351778_3352330_-	lysozyme	NA	NA	NA	NA	NA
AXK07145.1|3352308_3352551_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07146.1|3352555_3353368_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07147.1|3353367_3353631_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07148.1|3353849_3354266_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07149.1|3354270_3358227_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AXK07150.1|3358219_3358609_-	peptidoglycan endopeptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AXK07151.1|3358605_3359139_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AXK07152.1|3359206_3359566_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07153.1|3359575_3362188_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AXK07154.1|3362213_3362504_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AXK07155.1|3362521_3362851_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AXK07156.1|3362860_3363379_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AXK07157.1|3363633_3364134_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AXK07158.1|3364141_3364564_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07159.1|3364560_3364959_-	HK97 gp10 family phage protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AXK07160.1|3364955_3365351_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AXK07161.1|3365350_3365551_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07162.1|3365552_3366035_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AXK07163.1|3366097_3366349_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07164.1|3366358_3367006_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AXK07165.1|3367023_3367974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07166.1|3368402_3369005_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AXK07167.1|3369127_3369370_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AXK07986.1|3369375_3370431_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AXK07168.1|3370459_3371878_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AXK07169.1|3371880_3373158_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AXK07987.1|3373144_3373594_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AXK07170.1|3374269_3375220_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07171.1|3375237_3375459_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07172.1|3375473_3376172_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07173.1|3376164_3376485_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07988.1|3376964_3377576_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AXK07174.1|3377641_3377854_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07175.1|3378105_3379056_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07176.1|3379154_3380228_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AXK07177.1|3380395_3381190_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK07178.1|3381229_3381754_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AXK07179.1|3381746_3383489_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
AXK07180.1|3383698_3384457_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AXK07181.1|3384459_3385167_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AXK07182.1|3385183_3386065_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK07183.1|3386075_3386834_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK07989.1|3386802_3387558_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07990.1|3387627_3389046_+	amidase	NA	NA	NA	NA	NA
AXK07184.1|3389067_3389718_-	carbonic anhydrase	NA	NA	NA	NA	NA
AXK07185.1|3389851_3390187_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AXK07186.1|3390274_3391225_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07187.1|3391301_3393122_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AXK07188.1|3393126_3394200_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AXK07189.1|3394322_3395291_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
AXK07190.1|3395364_3396276_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AXK07191.1|3396294_3396867_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AXK07192.1|3396947_3397496_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AXK07193.1|3397495_3399085_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AXK07194.1|3399154_3399394_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AXK07195.1|3399434_3400466_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AXK07196.1|3400525_3401707_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
AXK07197.1|3401803_3402256_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07198.1|3402265_3403606_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AXK07199.1|3403922_3404960_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
AXK07200.1|3405341_3405701_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07991.1|3405784_3406726_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK07201.1|3406800_3407751_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07202.1|3408044_3409139_+	porin	NA	NA	NA	NA	NA
AXK07203.1|3409220_3410102_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AXK07204.1|3410123_3410963_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AXK07205.1|3411038_3412556_+	peptidase	NA	NA	NA	NA	NA
AXK07206.1|3412652_3413753_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
AXK07207.1|3413769_3414192_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AXK07208.1|3414214_3414427_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AXK07209.1|3414473_3415394_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AXK07992.1|3415657_3416326_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK07210.1|3416328_3416658_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AXK07211.1|3416864_3418298_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AXK07212.1|3418309_3418693_-	thioredoxin	NA	NA	NA	NA	NA
AXK07213.1|3418754_3419555_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07214.1|3419653_3420604_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	3708264	3841188	4108026	integrase,tRNA,transposase	uncultured_Mediterranean_phage(10.34%)	117	3756217:3756276	3845637:3846691
AXK07458.1|3708264_3709215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07459.1|3709211_3709847_-	transporter	NA	NA	NA	NA	NA
AXK07460.1|3709976_3710876_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
AXK07461.1|3710971_3711463_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AXK07462.1|3711509_3712475_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK07463.1|3713608_3714850_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AXK07464.1|3714963_3715980_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AXK07465.1|3716014_3716491_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07466.1|3716633_3717542_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AXK07467.1|3717655_3718768_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AXK08006.1|3718868_3719402_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AXK07468.1|3719490_3720741_+	kynureninase	NA	NA	NA	NA	NA
AXK07469.1|3720842_3721355_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AXK07470.1|3721452_3722403_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07471.1|3722468_3723407_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AXK07472.1|3723429_3724056_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AXK07473.1|3724052_3724709_-	HAD family hydrolase	NA	NA	NA	NA	NA
AXK07474.1|3724705_3725308_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07475.1|3725314_3725941_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
AXK07476.1|3726082_3726652_+	bacterioferritin	NA	NA	NA	NA	NA
AXK07477.1|3726722_3728042_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AXK08007.1|3728148_3728340_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AXK07478.1|3728591_3729881_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AXK07479.1|3730035_3731031_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK07480.1|3731115_3731790_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXK07481.1|3731786_3732737_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07482.1|3732723_3732906_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07483.1|3732898_3734140_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AXK07484.1|3734136_3735081_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AXK07485.1|3735199_3736150_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07486.1|3736109_3737039_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK07487.1|3737092_3737428_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AXK07488.1|3737472_3738237_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AXK07489.1|3738260_3739001_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK07490.1|3739008_3740583_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
AXK07491.1|3740596_3741574_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK07492.1|3741846_3742446_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AXK07493.1|3742479_3749382_-	autotransporter BatB	NA	NA	NA	NA	NA
AXK07494.1|3749828_3749960_-	entericidin, EcnA/B family	NA	NA	NA	NA	NA
AXK07495.1|3749991_3750153_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07496.1|3750225_3750432_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
AXK07497.1|3751436_3752096_+	HAD family hydrolase	NA	NA	NA	NA	NA
AXK07498.1|3752123_3753269_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
AXK07499.1|3753409_3753745_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AXK07500.1|3753819_3754680_-	prohibitin family protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
AXK07501.1|3754943_3755645_-	glutathione S-transferase	NA	NA	NA	NA	NA
AXK07502.1|3755814_3756210_+	RidA family protein	NA	NA	NA	NA	NA
3756217:3756276	attL	GCTAGGTGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAAC	NA	NA	NA	NA
AXK07503.1|3756319_3757270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07504.1|3757280_3757922_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07505.1|3758088_3758331_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07506.1|3758429_3759380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07507.1|3759415_3759883_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AXK07508.1|3760116_3760494_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07509.1|3760490_3760673_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07510.1|3760676_3761663_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AXK07511.1|3761659_3762307_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AXK07512.1|3762364_3762892_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07513.1|3762925_3764113_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AXK07514.1|3764102_3764465_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AXK07515.1|3764457_3764577_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07516.1|3764577_3764778_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXK07517.1|3764774_3765764_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AXK07518.1|3767250_3769221_-	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
AXK07519.1|3769462_3769861_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07520.1|3769869_3770793_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXK07521.1|3771249_3772200_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07522.1|3772430_3774122_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AXK07523.1|3774170_3774443_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AXK07524.1|3774439_3774811_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AXK07525.1|3774906_3775041_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AXK07526.1|3775446_3776856_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AXK07527.1|3776852_3777968_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AXK07528.1|3778062_3780516_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AXK07529.1|3780634_3781426_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXK07530.1|3781545_3782973_+	amidase	NA	NA	NA	NA	NA
AXK08008.1|3783011_3783983_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK07531.1|3784401_3785565_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AXK07532.1|3785652_3786498_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXK07533.1|3788054_3789005_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07534.1|3789559_3789934_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AXK07535.1|3790008_3791067_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AXK07536.1|3791090_3792041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07537.1|3794922_3796092_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AXK08009.1|3796192_3797800_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
AXK07538.1|3797846_3799868_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AXK07539.1|3799896_3800142_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AXK07540.1|3800155_3801346_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AXK07541.1|3801541_3802507_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK07542.1|3802529_3803669_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
AXK07543.1|3803880_3804843_+	immunogenic protein	NA	NA	NA	NA	NA
AXK07544.1|3804966_3806991_+	TRAP transporter permease	NA	NA	NA	NA	NA
AXK07545.1|3807187_3809431_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
AXK07546.1|3809709_3810168_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
AXK07547.1|3811095_3813717_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
AXK07548.1|3813780_3816408_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AXK07549.1|3816559_3817624_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK07550.1|3817620_3818394_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AXK07551.1|3818402_3819236_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK07552.1|3819248_3820028_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK08010.1|3820062_3821535_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AXK07553.1|3821562_3822321_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXK07554.1|3822376_3824227_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AXK07555.1|3824320_3824797_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AXK07556.1|3824813_3825734_-	bestrophin	NA	NA	NA	NA	NA
AXK07557.1|3825840_3826341_+	SET domain-containing protein	NA	NA	NA	NA	NA
AXK07558.1|3826714_3827407_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AXK07559.1|3827715_3828666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07560.1|3828662_3832436_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AXK07561.1|3832772_3834662_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AXK07562.1|3834673_3835567_+	cobalamin-binding protein	NA	NA	NA	NA	NA
AXK07563.1|3835592_3836468_+	thiazole synthase	NA	NA	NA	NA	NA
AXK07564.1|3836464_3837316_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AXK07565.1|3837377_3838058_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AXK07566.1|3838061_3838421_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07567.1|3838421_3839381_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07568.1|3839401_3839890_-	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AXK07569.1|3840171_3841188_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
3845637:3846691	attR	GTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACACCTAGCGCTGAAGGGCCTCGTGCTAGGCCGGCCGCTATGCCGGCGCCAGTTCCACCGTCAGGTGCCTGACTTCGTGGATCGACGACACGCGTTCCCGTATCTGGCTGGCCGTGACTCCACGGGCAATTACCAGGGCGCCCGCGTGCGTTGCCATGTTTTCCCGCGACGCCGCGCGTCGCGCCAGGGCCACAGACCTTGCCGCCACCTTGCGGCAATGCAAAATTCGACTGCTTGCCTTTGACAGCCATGGATAACTAAGTTAAGCTGAAGGGCTTACTGCTTTATCTGCGTGCAATTTCGGCATGGCAGGTTCAAGCCGGTAATGCCCATACACCGATCGGTCTGAAGCCCGCCAACCCATGAGGGTCGGCAAAGGCTTGCGCCAGCTCCCGGAAGCATGTTGCAGGTATTTCGGGCCGGGGTGCGTCACGAGCCCTCTATCCTGGATGCATCGATCGTTGTAAGGCACCGCCGGCCTGGCCATGCAGTGTTGTACGCATTATTTGTCTGCAAGACCCGCTCTTTTACGTAAACGAACGTTTGAGGCGGTTTTGCGTGAACTGCCTCCCCCTCGCTTGGGGCCAGATTGGTCGCCGAATGCTGGGAGGGTGCGAGTACGTAAGTACTTACCAGTGGTACGTAAAAGGGATTTCAAAGGTCATGCCTACCATTAGCCAGCTCGTGCGCAAGCCGCGCGAAGTCAGCATCATCAAGAGCAAGAGCCCCGCGCTCGAGAACTGCCCGCAGCGTCGCGGCGTTTGCACTCGCGTCTACACCACCACCCCCAAGAAGCCGAACTCCGCGCTGCGTAAGGTTGCCAAGGTGCGTCTGACCAACGGTTACGAAGTCATTTCGTACATCGGCGGTGAAGGCCACAACCTGCAGGAGCACTCGGTGGTTCTGGTGCGTGGCGGTCGTGTCAAGGACTTGCCCGGTGTGCGTTATCACATCGTGCGCGGTTCCCTCGACCTGCAAGGCGTCAAGGATCGCAAACAGGCTCG	NA	NA	NA	NA
>prophage 30
CP031112	Bordetella pertussis strain UK38 chromosome, complete genome	4108026	4007096	4072007	4108026	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AXK07734.1|4007096_4007582_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK07735.1|4007800_4008781_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK07736.1|4009047_4009857_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AXK07737.1|4009896_4010577_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AXK07738.1|4010570_4011029_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AXK07739.1|4011040_4011403_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AXK07740.1|4011485_4012169_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AXK07741.1|4012224_4012533_+	type IV secretion protein A	NA	NA	NA	NA	NA
AXK07742.1|4012551_4012866_+	type IV secretion protein B	NA	NA	NA	NA	NA
AXK07743.1|4012862_4015337_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AXK07744.1|4015344_4016736_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AXK07745.1|4016732_4016918_+	type IV secretion protein I	NA	NA	NA	NA	NA
AXK07746.1|4016896_4017598_+	type IV secretion protein E	NA	NA	NA	NA	NA
AXK07747.1|4017594_4018416_+	P-type conjugative transfer protein VirB9	NA	NA	NA	NA	NA
AXK08018.1|4018396_4019521_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AXK07748.1|4019513_4020533_+	type IV secretion protein H	NA	NA	NA	NA	NA
AXK07749.1|4020738_4021773_-	DMT family transporter	NA	NA	NA	NA	NA
AXK08019.1|4021873_4022665_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXK07750.1|4022747_4023122_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AXK07751.1|4023099_4024509_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AXK07752.1|4024501_4025884_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AXK07753.1|4026218_4027823_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXK07754.1|4027858_4028872_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK07755.1|4028882_4029809_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK07756.1|4030199_4031150_-|transposase	IS481 family transposase IS481	transposase	NA	NA	NA	NA
AXK07757.1|4031319_4032546_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AXK07758.1|4032745_4033612_+	ATP-binding protein	NA	NA	NA	NA	NA
AXK07759.1|4033604_4034567_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AXK07760.1|4034667_4035618_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AXK07761.1|4035716_4036667_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07762.1|4036765_4037716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AXK07763.1|4037712_4039206_-	RND transporter	NA	NA	NA	NA	NA
AXK07764.1|4039202_4042310_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AXK07765.1|4042306_4045375_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AXK07766.1|4045371_4046622_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXK07767.1|4046802_4047564_-	cell division protein ZapD	NA	NA	NA	NA	NA
AXK07768.1|4047596_4048247_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AXK07769.1|4048249_4049089_-	prepilin peptidase	NA	NA	NA	NA	NA
AXK07770.1|4049329_4050073_+	hypothetical protein	NA	NA	NA	NA	NA
AXK07771.1|4050155_4050503_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AXK07772.1|4050600_4051443_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AXK07773.1|4051487_4052375_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AXK07774.1|4052401_4052590_-	DUF3460 family protein	NA	NA	NA	NA	NA
AXK07775.1|4052687_4054145_+	MFS transporter	NA	NA	NA	NA	NA
AXK07776.1|4054131_4055658_+	glycerol kinase	NA	NA	NA	NA	NA
AXK07777.1|4055676_4056144_-	hypothetical protein	NA	NA	NA	NA	NA
AXK07778.1|4056143_4057166_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AXK07779.1|4057286_4058027_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AXK07780.1|4058081_4059182_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK07781.1|4059183_4060374_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXK07782.1|4060493_4061510_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AXK07783.1|4061828_4062500_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AXK07784.1|4062496_4063405_+	ABC transporter permease	NA	NA	NA	NA	NA
AXK07785.1|4063616_4064264_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AXK07786.1|4068115_4069192_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AXK07787.1|4069202_4070012_-	transcriptional regulator	NA	NA	NA	NA	NA
AXK07788.1|4070101_4070875_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXK07789.1|4071056_4072007_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
