assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003382705.1_ASM338270v1	CP031282	Escherichia fergusonii strain 40A chromosome, complete genome	1	2041681-2041830	1,1	CRISPRCasFinder,PILER-CR	no		DEDDh,c2c9_V-U4,cas14i,cas2,cas1,cse2gr11,cas3,csa3	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAACTC,TTTCTAAGCTGCCTGTACGGCAGTGAACTC	30,30	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	DEDDh,c2c9_V-U4,cas14i,cas2,cas1,cse2gr11,cas3,csa3,RT	NA|68aa|up_2|CP031282.1_2035194_2035398_+,NA|66aa|down_1|CP031282.1_2045231_2045429_-	NA|249aa|up_9|CP031282.1_2002657_2003404_-	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional	NA|61aa|up_8|CP031282.1_2003400_2003583_-	PRK11827, PRK11827, protein YcaR	NA|583aa|up_7|CP031282.1_2005885_2007634_-	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA	NA|228aa|up_6|CP031282.1_2012357_2013041_-	PRK00023, cmk, (d)CMP kinase	NA|587aa|up_5|CP031282.1_2016667_2018428_+	TIGR03549, TIGR03549, YcaO domain protein	NA|204aa|up_4|CP031282.1_2029664_2030276_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|165aa|up_3|CP031282.1_2034451_2034946_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|68aa|up_2|CP031282.1_2035194_2035398_+	NA	NA|589aa|up_1|CP031282.1_2036565_2038332_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|73aa|up_0|CP031282.1_2041078_2041297_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|107aa|down_0|CP031282.1_2044342_2044663_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|66aa|down_1|CP031282.1_2045231_2045429_-	NA	NA|317aa|down_2|CP031282.1_2048640_2049591_+	pfam04393, DUF535, Protein of unknown function (DUF535)	NA|232aa|down_3|CP031282.1_2051664_2052360_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|277aa|down_4|CP031282.1_2063842_2064673_-	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|172aa|down_5|CP031282.1_2065117_2065633_+	PRK10533, PRK10533, putative lipoprotein; Provisional	NA|243aa|down_6|CP031282.1_2065848_2066577_+	PRK11124, artP, arginine transporter ATP-binding subunit; Provisional	NA|244aa|down_7|CP031282.1_2066594_2067326_+	PRK15007, PRK15007, arginine ABC transporter substrate-binding protein	NA|239aa|down_8|CP031282.1_2067332_2068049_+	PRK11123, PRK11123, arginine ABC transporter permease ArtQ	NA|244aa|down_9|CP031282.1_2068942_2069674_+	cd13700, PBP2_Arg_STM4351, Substrate binding domain of arginine-specific ABC transporter; type 2 periplasmic-binding protein fold
GCA_003382705.1_ASM338270v1	CP031282	Escherichia fergusonii strain 40A chromosome, complete genome	2	2694310-2694759	2,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cse2gr11	DEDDh,c2c9_V-U4,cas14i,cas2,cas1,cse2gr11,cas3,csa3	Type I-E	TCGGTTTATCCCCGCTGGCGCGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGAACAC,CGGTTTATCCCCGCTGGCGCGGG	29,28,23	0	0	NA	NA	I-E:I-E:I-E	7,7,6	7	TypeI-E	DEDDh,c2c9_V-U4,cas14i,cas2,cas1,cse2gr11,cas3,csa3,RT	NA|62aa|up_4|CP031282.1_2689501_2689687_-,NA|88aa|down_7|CP031282.1_2709395_2709659_-	NA|198aa|up_9|CP031282.1_2681986_2682580_-	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism]	NA|136aa|up_8|CP031282.1_2682726_2683134_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|209aa|up_7|CP031282.1_2685590_2686217_-	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|350aa|up_6|CP031282.1_2686951_2688001_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|104aa|up_5|CP031282.1_2689202_2689514_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|62aa|up_4|CP031282.1_2689501_2689687_-	NA	NA|108aa|up_3|CP031282.1_2689688_2690012_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_2|CP031282.1_2690061_2690667_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_1|CP031282.1_2690666_2692094_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_0|CP031282.1_2692095_2693004_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	cas2|98aa|down_0|CP031282.1_2694855_2695149_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|340aa|down_1|CP031282.1_2695048_2696068_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cse2gr11|179aa|down_2|CP031282.1_2698540_2699077_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|51aa|down_3|CP031282.1_2703616_2703769_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_4|CP031282.1_2704035_2704770_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|600aa|down_5|CP031282.1_2706554_2708354_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|down_6|CP031282.1_2708669_2709035_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|88aa|down_7|CP031282.1_2709395_2709659_-	NA	NA|116aa|down_8|CP031282.1_2711783_2712131_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|71aa|down_9|CP031282.1_2712296_2712509_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCA_003382705.1_ASM338270v1	CP031282	Escherichia fergusonii strain 40A chromosome, complete genome	3	2709785-2710167	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cse2gr11	DEDDh,c2c9_V-U4,cas14i,cas2,cas1,cse2gr11,cas3,csa3	Type I-E	CGGTTTATCCCCGCTGGCGCGGGAACTC,CGGTTTATCCCCGCTGGCG,GTTTATCCCCGCTGGCGCGGGGAACTC	28,19,27	0	0	NA	NA	I-E:NA:I-E	5,6,3	6	TypeI-E	DEDDh,c2c9_V-U4,cas14i,cas2,cas1,cse2gr11,cas3,csa3,RT	NA|88aa|up_0|CP031282.1_2709395_2709659_-,NA	NA|476aa|up_9|CP031282.1_2690666_2692094_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_8|CP031282.1_2692095_2693004_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	cas2|98aa|up_7|CP031282.1_2694855_2695149_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|340aa|up_6|CP031282.1_2695048_2696068_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cse2gr11|179aa|up_5|CP031282.1_2698540_2699077_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|51aa|up_4|CP031282.1_2703616_2703769_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|up_3|CP031282.1_2704035_2704770_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|600aa|up_2|CP031282.1_2706554_2708354_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_1|CP031282.1_2708669_2709035_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|88aa|up_0|CP031282.1_2709395_2709659_-	NA	NA|116aa|down_0|CP031282.1_2711783_2712131_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|71aa|down_1|CP031282.1_2712296_2712509_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|433aa|down_2|CP031282.1_2717827_2719126_-	PRK00077, eno, enolase; Provisional	NA|919aa|down_3|CP031282.1_2725597_2728354_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|88aa|down_4|CP031282.1_2733387_2733651_+	TIGR04154, archaeo_STT3, oligosaccharyl transferase, archaeosortase A system-associated	NA|261aa|down_5|CP031282.1_2736730_2737513_-	PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional	NA|110aa|down_6|CP031282.1_2737512_2737842_-	COG3098, COG3098, Uncharacterized protein conserved in bacteria [Function unknown]	NA|430aa|down_7|CP031282.1_2741960_2743250_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|456aa|down_8|CP031282.1_2743307_2744675_+	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|252aa|down_9|CP031282.1_2744786_2745542_+	PRK09482, PRK09482, flap endonuclease-like protein; Provisional
GCA_003382705.1_ASM338270v1	CP031282	Escherichia fergusonii strain 40A chromosome, complete genome	4	2712587-2713034	4,3,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cse2gr11	DEDDh,c2c9_V-U4,cas14i,cas2,cas1,cse2gr11,cas3,csa3	Type I-E	CGGTTTATCCCCGCTGGCGCGGGAACTC,CGGTTTATCCCCGCTGGCGCGGG,GTTTATCCCCGCTGGCGCGGG	28,23,21	0	0	NA	NA	I-E:I-E:NA	7,7,6	7	TypeI-E	DEDDh,c2c9_V-U4,cas14i,cas2,cas1,cse2gr11,cas3,csa3,RT	NA|88aa|up_2|CP031282.1_2709395_2709659_-,NA	cas2|98aa|up_9|CP031282.1_2694855_2695149_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|340aa|up_8|CP031282.1_2695048_2696068_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cse2gr11|179aa|up_7|CP031282.1_2698540_2699077_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|51aa|up_6|CP031282.1_2703616_2703769_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|up_5|CP031282.1_2704035_2704770_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|600aa|up_4|CP031282.1_2706554_2708354_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_3|CP031282.1_2708669_2709035_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|88aa|up_2|CP031282.1_2709395_2709659_-	NA	NA|116aa|up_1|CP031282.1_2711783_2712131_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|71aa|up_0|CP031282.1_2712296_2712509_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|433aa|down_0|CP031282.1_2717827_2719126_-	PRK00077, eno, enolase; Provisional	NA|919aa|down_1|CP031282.1_2725597_2728354_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|88aa|down_2|CP031282.1_2733387_2733651_+	TIGR04154, archaeo_STT3, oligosaccharyl transferase, archaeosortase A system-associated	NA|261aa|down_3|CP031282.1_2736730_2737513_-	PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional	NA|110aa|down_4|CP031282.1_2737512_2737842_-	COG3098, COG3098, Uncharacterized protein conserved in bacteria [Function unknown]	NA|430aa|down_5|CP031282.1_2741960_2743250_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|456aa|down_6|CP031282.1_2743307_2744675_+	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|252aa|down_7|CP031282.1_2744786_2745542_+	PRK09482, PRK09482, flap endonuclease-like protein; Provisional	NA|367aa|down_8|CP031282.1_2745595_2746696_-	PRK11760, PRK11760, putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional	NA|132aa|down_9|CP031282.1_2746688_2747084_-	PRK10873, PRK10873, hypothetical protein; Provisional
