The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031537	Staphylococcus aureus strain WCH-SK2 chromosome, complete genome	2914635	10859	19615	2914635	head,transposase	Staphylococcus_phage(87.5%)	13	NA	NA
AXN66744.1|10859_11057_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
AXN66745.1|11745_11970_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	4.3e-18
AXN66746.1|12014_12230_-	hypothetical protein	NA	NA	NA	NA	NA
AXN66747.1|12248_13421_+|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXN66748.1|13594_13801_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
AXN66749.1|14257_15430_-|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXN66750.1|15833_15944_+	hypothetical protein	NA	NA	NA	NA	NA
AXN66751.1|16371_16557_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
AXN66752.1|17068_17173_+	hypothetical protein	NA	NA	NA	NA	NA
AXN66753.1|17127_17301_+	hypothetical protein	NA	NA	NA	NA	NA
AXN66754.1|17301_17553_+	hypothetical protein	NA	NA	NA	NA	NA
AXN66755.1|17598_18183_+|head	phage head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	72.0	2.0e-30
AXN66756.1|18442_19615_+|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 2
CP031537	Staphylococcus aureus strain WCH-SK2 chromosome, complete genome	2914635	300878	309190	2914635	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
AXN67015.1|300878_301664_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
AXN67016.1|301789_302680_-	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
AXN67017.1|302689_304036_-	DEAD/DEAH box family ATP-dependent RNA helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
AXN67018.1|304149_305250_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
AXN67019.1|305252_305930_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AXN67020.1|306060_307167_-	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AXN67021.1|307390_309190_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 3
CP031537	Staphylococcus aureus strain WCH-SK2 chromosome, complete genome	2914635	378328	387371	2914635	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AXN67091.1|378328_378847_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
AXN67092.1|378868_381142_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	8.9e-63
AXN67093.1|381344_383624_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AXN67094.1|383898_384159_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AXN67095.1|384177_385317_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AXN67096.1|385339_386365_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AXN67097.1|386366_387371_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 4
CP031537	Staphylococcus aureus strain WCH-SK2 chromosome, complete genome	2914635	522914	602325	2914635	protease,transposase,tRNA	Staphylococcus_phage(95.08%)	79	NA	NA
AXN67220.1|522914_529475_-	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
AXN67221.1|529800_530112_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
AXN67222.1|530133_532551_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
AXN67223.1|532838_534020_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
AXN67224.1|534129_535083_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AXN67225.1|535079_535643_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AXN67226.1|535762_536164_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXN67227.1|537742_538570_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXN67228.1|538572_538692_-	hypothetical protein	NA	NA	NA	NA	NA
AXN67229.1|538703_538895_-	hypothetical protein	NA	NA	NA	NA	NA
AXN67230.1|538803_539805_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
AXN67231.1|539926_540391_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
AXN67232.1|540403_541585_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	1.6e-225
AXN67233.1|541595_542228_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
AXN69503.1|542234_543266_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
AXN67234.1|543758_545261_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
AXN67235.1|545783_546098_+	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
AXN67236.1|546097_547390_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AXN67237.1|547407_547803_+	protein ArsC	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
AXN67238.1|548097_548952_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AXN67239.1|549227_549452_-	hypothetical protein	NA	NA	NA	NA	NA
AXN67240.1|549650_550121_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
AXN67241.1|550233_550677_+	competence protein ComK	NA	NA	NA	NA	NA
AXN67242.1|550663_551107_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
AXN67243.1|551561_552734_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	99.6	2.2e-134
AXN67244.1|553809_554523_-	transaldolase	NA	M1PR54	Cyanophage	35.3	1.2e-18
AXN67245.1|554782_555085_+	hypothetical protein	NA	NA	NA	NA	NA
AXN67246.1|555340_555706_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AXN67247.1|555702_556056_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
AXN67248.1|558138_558972_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
AXN67249.1|559183_560092_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
AXN67250.1|560216_561410_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AXN67251.1|561780_563373_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AXN67252.1|563508_563994_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
AXN69504.1|564368_565115_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
AXN67253.1|565119_565593_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
AXN67254.1|565658_565916_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AXN67255.1|565912_566914_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
AXN67256.1|566918_568397_-	2-succinylbenzoate-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
AXN69505.1|568555_569011_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
AXN67257.1|569313_569964_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
AXN67258.1|570044_571040_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
AXN67259.1|571115_571742_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
AXN67260.1|571782_572127_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
AXN67261.1|572224_572776_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
AXN67262.1|572993_573635_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
AXN67263.1|573748_573934_-	hypothetical protein	NA	NA	NA	NA	NA
AXN67264.1|573935_574112_-	hypothetical protein	NA	NA	NA	NA	NA
AXN67265.1|574122_574506_-	hypothetical protein	NA	NA	NA	NA	NA
AXN67266.1|574697_574907_-|transposase	transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	100.0	1.4e-31
AXN67267.1|575109_575253_-	hypothetical protein	NA	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
AXN67268.1|575455_575551_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
AXN67269.1|575673_575775_+	hypothetical protein	NA	NA	NA	NA	NA
AXN69506.1|576122_576482_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
AXN67270.1|577020_581133_-	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
AXN67271.1|581982_583182_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
AXN67272.1|583174_584914_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.2	9.9e-288
AXN67273.1|584894_585029_-	hypothetical protein	NA	NA	NA	NA	NA
AXN67274.1|585093_585813_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
AXN67275.1|585963_586680_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
AXN67276.1|586781_586889_+	hypothetical protein	NA	NA	NA	NA	NA
AXN67277.1|586837_587557_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AXN67278.1|587677_588397_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
AXN67279.1|588454_589177_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
AXN67280.1|589301_590009_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
AXN67281.1|590444_590663_-	hypothetical protein	NA	NA	NA	NA	NA
AXN67282.1|590971_591538_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
AXN67283.1|592011_592710_-	BsaG protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
AXN67284.1|592706_593468_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	99.6	3.7e-130
AXN67285.1|593464_594157_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
AXN67286.1|594179_595553_-	peptidase S8	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
AXN67287.1|595562_596081_-	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
AXN67288.1|596096_597341_-	lanthionine synthetase	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
AXN67289.1|597333_599076_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	54.1	2.5e-259
AXN67290.1|599140_599284_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
AXN67291.1|599727_599919_+	hypothetical protein	NA	NA	NA	NA	NA
AXN67292.1|600020_600164_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
AXN67293.1|600404_601388_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
AXN67294.1|601389_602325_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 5
CP031537	Staphylococcus aureus strain WCH-SK2 chromosome, complete genome	2914635	699813	803722	2914635	head,terminase,capsid,portal,protease,tail,integrase,transposase,holin,coat	Staphylococcus_phage(85.42%)	132	787150:787169	801744:801763
AXN67382.1|699813_700980_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
AXN67383.1|701010_701337_+	staphostatin A	NA	NA	NA	NA	NA
AXN67384.1|701628_701802_-	NETI motif-containing protein	NA	NA	NA	NA	NA
AXN67385.1|701782_702385_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
AXN67386.1|702655_703477_-	NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
AXN67387.1|703469_704939_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
AXN67388.1|705122_706199_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
AXN67389.1|706218_707013_+	prephenate dehydratase	NA	NA	NA	NA	NA
AXN67390.1|707084_707192_+	hypothetical protein	NA	NA	NA	NA	NA
AXN67391.1|707202_708765_-	sodium-dependent dicarboxylate transporter SdcS	NA	NA	NA	NA	NA
AXN67392.1|708969_710067_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
AXN67393.1|710438_710999_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
AXN67394.1|711051_711981_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
AXN67395.1|712175_712349_-	hypothetical protein	NA	NA	NA	NA	NA
AXN67396.1|712400_713780_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AXN67397.1|713899_714928_-	hypothetical protein	NA	NA	NA	NA	NA
AXN67398.1|715197_715599_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
AXN67399.1|716171_716345_-	hypothetical protein	NA	NA	NA	NA	NA
AXN67400.1|716795_717836_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
AXN67401.1|717892_718735_-	hypothetical protein	NA	NA	NA	NA	NA
AXN67402.1|718731_719289_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
AXN67403.1|719348_719873_-	hypothetical protein	NA	NA	NA	NA	NA
AXN67404.1|719993_720557_+	thioredoxin family protein	NA	NA	NA	NA	NA
AXN67405.1|720622_721363_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
AXN67406.1|721362_722235_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
AXN67407.1|722231_722912_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
AXN67408.1|722912_723809_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
AXN67409.1|723805_724186_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXN67410.1|724449_724626_-	hypothetical protein	NA	NA	NA	NA	NA
AXN67411.1|724868_724967_-	hypothetical protein	NA	NA	NA	NA	NA
AXN67412.1|725166_726453_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AXN67413.1|726776_727067_-	MAP domain-containing protein	NA	NA	NA	NA	NA
AXN67414.1|727077_728832_-	MAP domain-containing protein	NA	NA	NA	NA	NA
AXN67415.1|729217_729418_+	hypothetical protein	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
AXN67416.1|729802_730975_-|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXN67417.1|731121_731301_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
AXN67418.1|731324_731633_+	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	100.0	2.1e-39
AXN67419.1|731611_731872_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
AXN67420.1|731924_732275_-	inhibitor	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
AXN67421.1|732784_733243_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	2.4e-84
AXN67422.1|733168_733324_+	amidase	NA	NA	NA	NA	NA
AXN67423.1|733771_734263_-	staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
AXN67424.1|734453_735209_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AXN67425.1|735220_735475_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AXN69511.1|735686_735863_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	96.6	3.8e-22
AXN67426.1|735971_736745_-	enterotoxin	NA	A0A1X9H080	Staphylococcus_phage	100.0	1.1e-145
AXN67427.1|737117_737492_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
AXN67428.1|737547_737835_-	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
AXN67429.1|737880_738033_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
AXN67430.1|738025_741808_-	hypothetical protein	NA	A0A1X9H096	Staphylococcus_phage	99.7	0.0e+00
AXN67431.1|741823_743308_-|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	99.8	3.4e-297
AXN67432.1|748078_748429_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
AXN67433.1|748478_748703_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	98.6	8.8e-32
AXN67434.1|748744_749389_-|tail	phage tail protein	tail	W5R9H4	Staphylococcus_phage	100.0	6.5e-120
AXN67435.1|749389_749797_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
AXN67436.1|749793_750198_-	hypothetical protein	NA	A0A2I6PDJ6	Staphylococcus_phage	100.0	4.3e-69
AXN67437.1|750194_750557_-|head,tail	phage head-tail adapter protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
AXN67438.1|750540_750825_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
AXN67439.1|750814_751099_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
AXN67440.1|751118_752264_-|capsid	phage major capsid protein	capsid	A0A1X9H072	Staphylococcus_phage	100.0	5.6e-215
AXN67441.1|752287_753025_-|protease	Clp protease ClpP	protease	C8CH20	Staphylococcus_phage	100.0	2.3e-129
AXN67442.1|753008_754196_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
AXN67443.1|754211_755873_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
AXN67444.1|755869_756214_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
AXN67445.1|756344_756644_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
AXN67446.1|756875_757292_-	transcriptional regulator	NA	A0A1X9H0U8	Staphylococcus_phage	100.0	2.9e-76
AXN67447.1|757319_757520_-	DUF1514 domain-containing protein	NA	R9QT57	Staphylococcus_phage	98.5	1.4e-28
AXN67448.1|757519_757669_-	transcriptional regulator	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AXN67449.1|757665_757872_-	DUF1381 domain-containing protein	NA	A0A1X9H0C2	Staphylococcus_phage	100.0	1.3e-21
AXN67450.1|757908_758445_-	dUTPase	NA	A0A1X9H0S5	Staphylococcus_phage	100.0	1.4e-96
AXN67451.1|758437_758848_-	acetyltransferase	NA	C8CH13	Staphylococcus_phage	100.0	2.3e-70
AXN67452.1|758844_759354_-	hypothetical protein	NA	A0A1X9H0D4	Staphylococcus_phage	100.0	3.2e-93
AXN67453.1|759350_759800_-	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	99.3	2.1e-80
AXN67454.1|759864_760107_-	hypothetical protein	NA	A0EWX8	Staphylococcus_phage	100.0	3.9e-41
AXN67455.1|760110_760479_-	hypothetical protein	NA	W5RAK8	Staphylococcus_phage	100.0	8.2e-51
AXN67456.1|760491_760896_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
AXN67457.1|760904_761123_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
AXN67458.1|761129_762014_-	DnaD domain protein	NA	S4V6D4	Staphylococcus_phage	95.9	3.1e-136
AXN67459.1|762043_762514_-	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	99.4	4.8e-80
AXN67460.1|762514_763132_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
AXN67461.1|763212_764133_-	recombinase	NA	A0A1V0E5D7	Staphylococcus_phage	100.0	1.0e-166
AXN67462.1|764134_766078_-	ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	99.1	0.0e+00
AXN67463.1|766086_766350_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
AXN67464.1|766358_766619_-	DUF1108 family protein	NA	A0A1W6JQ03	Staphylococcus_phage	100.0	7.6e-43
AXN67465.1|766711_766873_-	DUF1270 family protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
AXN67466.1|766869_767190_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
AXN67467.1|767248_767881_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
AXN67468.1|767895_768036_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
AXN67469.1|768066_768261_-	hypothetical protein	NA	A0A1X9H0A2	Staphylococcus_phage	100.0	1.5e-19
AXN67470.1|768277_769030_-	oxidoreductase	NA	A0A1X9H0A0	Staphylococcus_phage	100.0	8.7e-140
AXN67471.1|769086_769626_+	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
AXN67472.1|769649_769910_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
AXN67473.1|769922_770162_-	XRE family transcriptional regulator	NA	G4KNM9	Staphylococcus_phage	100.0	2.3e-38
AXN67474.1|770332_771040_+	XRE family transcriptional regulator	NA	G4KNM8	Staphylococcus_phage	100.0	7.7e-130
AXN67475.1|771193_771379_+	hypothetical protein	NA	A0A2I6PDS4	Staphylococcus_phage	100.0	2.3e-25
AXN67476.1|771578_771746_+	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
AXN67477.1|771885_772425_+	growth inhibitor PemK	NA	U5U4R0	Staphylococcus_phage	33.1	9.0e-14
AXN67478.1|772597_773635_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
AXN67479.1|774753_775770_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
AXN67480.1|775791_776847_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
AXN67481.1|777281_778505_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
AXN67482.1|778876_779722_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXN67483.1|779783_780695_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXN67484.1|780806_781979_-|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXN67485.1|782187_783495_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
AXN67486.1|784347_784791_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXN67487.1|784955_785333_-	hypothetical protein	NA	NA	NA	NA	NA
AXN67488.1|785650_786241_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
AXN67489.1|786237_786450_-	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
787150:787169	attL	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
AXN67490.1|787728_788664_+	permease	NA	NA	NA	NA	NA
AXN67491.1|789518_789791_-	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	54.9	1.7e-21
AXN67492.1|789932_790901_-	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	2.7e-24
AXN67493.1|791177_791747_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
AXN69512.1|791743_791956_-	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	97.1	5.4e-31
AXN67494.1|792087_792615_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	100.0	6.8e-91
AXN67495.1|792667_793321_-	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	99.5	7.6e-116
AXN67496.1|793351_793693_-	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	100.0	2.9e-58
AXN67497.1|794228_794870_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	94.8	8.5e-112
AXN67498.1|794871_795135_-	hypothetical protein	NA	NA	NA	NA	NA
AXN67499.1|795136_795493_-	pathogenicity island protein	NA	A0A2H4JBD4	uncultured_Caudovirales_phage	78.8	3.0e-50
AXN67500.1|795735_797106_-	DNA primase	NA	A0A2H4JBE3	uncultured_Caudovirales_phage	95.0	2.4e-257
AXN67501.1|797117_797987_-	mobile element-associated protein	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	75.8	2.2e-131
AXN67502.1|798051_798378_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	98.1	1.8e-54
AXN67503.1|798378_798762_-	pathogenicity island protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	9.7e-63
AXN67504.1|798763_798967_-	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
AXN67505.1|798951_799107_-	pathogenicity island protein	NA	NA	NA	NA	NA
AXN67506.1|799103_799421_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	98.1	9.2e-51
AXN67507.1|799425_799644_-	XRE family transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
AXN67508.1|799816_800491_+	XRE family transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	1.6e-39
AXN67509.1|800504_801677_+|integrase	site-specific integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	98.2	7.8e-220
AXN67510.1|801745_803362_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	1.2e-157
801744:801763	attR	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
AXN67511.1|803437_803722_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
>prophage 6
CP031537	Staphylococcus aureus strain WCH-SK2 chromosome, complete genome	2914635	1336278	1392660	2914635	protease,holin,transposase	Enterobacteria_phage(22.22%)	54	NA	NA
AXN68033.1|1336278_1336968_-|holin	holin-like protein CidB	holin	NA	NA	NA	NA
AXN68034.1|1336960_1337356_-|holin	holin-like murein hydrolase modulator CidA	holin	NA	NA	NA	NA
AXN69534.1|1337568_1338432_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXN68035.1|1338613_1338832_+	hypothetical protein	NA	NA	NA	NA	NA
AXN68036.1|1339220_1339652_+	CHAP domain-containing protein	NA	NA	NA	NA	NA
AXN68037.1|1339916_1340021_-	hypothetical protein	NA	NA	NA	NA	NA
AXN68038.1|1340411_1340669_-	hypothetical protein	NA	NA	NA	NA	NA
AXN68039.1|1341247_1342525_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
AXN68040.1|1342778_1343945_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
AXN68041.1|1344114_1344636_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	41.1	2.0e-26
AXN68042.1|1345044_1347150_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	38.5	3.1e-118
AXN68043.1|1347218_1347389_-	FeoB-associated Cys-rich membrane protein	NA	NA	NA	NA	NA
AXN68044.1|1347401_1349396_-	ferrous iron transport protein B	NA	NA	NA	NA	NA
AXN68045.1|1349407_1349635_-	ferrous iron transporter A	NA	NA	NA	NA	NA
AXN68046.1|1349850_1352319_-	MMPL family transporter	NA	NA	NA	NA	NA
AXN68047.1|1352484_1353033_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXN68048.1|1353109_1353277_-	hypothetical protein	NA	NA	NA	NA	NA
AXN68049.1|1353388_1354933_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AXN68050.1|1355122_1355722_-	sugar O-acetyltransferase	NA	NA	NA	NA	NA
AXN68051.1|1355960_1356152_+	hypothetical protein	NA	NA	NA	NA	NA
AXN68052.1|1356391_1358800_+	copper-exporting P-type ATPase A	NA	A0A218MNH6	uncultured_virus	40.8	2.9e-128
AXN68053.1|1359344_1359551_+	copper chaperone	NA	NA	NA	NA	NA
AXN68054.1|1359640_1360639_-	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.2	3.5e-35
AXN68055.1|1360661_1361816_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AXN68056.1|1362242_1363751_-	dehydrosqualene desaturase	NA	NA	NA	NA	NA
AXN68057.1|1363762_1364626_-	dehydrosqualene synthase	NA	NA	NA	NA	NA
AXN68058.1|1364662_1365790_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AXN68059.1|1365795_1367289_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AXN69535.1|1367281_1367770_-	glycosyl-4,4'-diaponeurosporenoate acyltransferase	NA	NA	NA	NA	NA
AXN68060.1|1367950_1368718_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
AXN68061.1|1369078_1370890_-	acetyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.3e-35
AXN68062.1|1371575_1372277_-	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.8	2.1e-39
AXN68063.1|1372884_1373940_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
AXN69536.1|1374350_1374920_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXN68064.1|1375117_1375618_+	hypothetical protein	NA	NA	NA	NA	NA
AXN68065.1|1375837_1376068_+	DUF896 domain-containing protein	NA	NA	NA	NA	NA
AXN68066.1|1376230_1376608_-	glyoxalase	NA	NA	NA	NA	NA
AXN68067.1|1376624_1377446_-	NmrA/HSCARG family protein	NA	NA	NA	NA	NA
AXN68068.1|1377464_1377764_-	DUF2316 family protein	NA	NA	NA	NA	NA
AXN68069.1|1377894_1378452_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AXN68070.1|1378444_1379149_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXN68071.1|1379246_1380257_+	amidohydrolase	NA	NA	NA	NA	NA
AXN68072.1|1380276_1381107_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXN68073.1|1381253_1382144_-	GTP-binding protein	NA	NA	NA	NA	NA
AXN68074.1|1382243_1383584_-	ferrous iron transporter B	NA	NA	NA	NA	NA
AXN68075.1|1383577_1384684_-	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA	NA
AXN68076.1|1385063_1385615_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	43.6	1.0e-28
AXN68077.1|1385715_1386531_-	ATP-binding protein	NA	NA	NA	NA	NA
AXN68078.1|1386523_1387966_-|transposase	transposase	transposase	NA	NA	NA	NA
AXN68079.1|1387937_1388531_-	HTH domain-containing protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	1.1e-41
AXN68080.1|1388792_1389173_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
AXN68081.1|1389162_1390920_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
AXN68082.1|1391026_1391872_+	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	NA	A0A1B0VBP7	Salmonella_phage	34.0	1.5e-31
AXN68083.1|1392144_1392660_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 7
CP031537	Staphylococcus aureus strain WCH-SK2 chromosome, complete genome	2914635	1962846	1978859	2914635	integrase	Streptococcus_phage(76.92%)	16	1958754:1958768	1974683:1974697
1958754:1958768	attL	GATTCATCATTTGAC	NA	NA	NA	NA
AXN68588.1|1962846_1964313_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
AXN68589.1|1964337_1965879_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
AXN68590.1|1965946_1967140_-|integrase	site-specific integrase	integrase	A0A0S2MV79	Bacillus_phage	34.2	8.3e-44
AXN68591.1|1967166_1967367_-	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
AXN68592.1|1967864_1968095_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	78.9	1.0e-27
AXN68593.1|1968091_1968574_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	68.6	8.5e-48
AXN68594.1|1968702_1968813_-	hypothetical protein	NA	NA	NA	NA	NA
AXN68595.1|1969044_1969398_+	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	89.7	2.2e-53
AXN68596.1|1969455_1969623_-	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	62.0	2.3e-13
AXN68597.1|1969741_1971661_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	97.2	0.0e+00
AXN68598.1|1971676_1971763_-	tetracycline resistance protein	NA	NA	NA	NA	NA
AXN69557.1|1972037_1972976_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	56.6	1.1e-83
AXN68599.1|1972983_1974006_-	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	75.5	2.4e-132
AXN68600.1|1974002_1976030_-	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	65.5	2.3e-195
1974683:1974697	attR	GATTCATCATTTGAC	NA	NA	NA	NA
AXN68601.1|1976026_1978480_-	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	78.8	0.0e+00
AXN69558.1|1978463_1978859_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	72.6	5.9e-47
>prophage 8
CP031537	Staphylococcus aureus strain WCH-SK2 chromosome, complete genome	2914635	1982011	1990178	2914635		Streptococcus_phage(85.71%)	10	NA	NA
AXN68605.1|1982011_1982512_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	63.0	1.7e-54
AXN68606.1|1982572_1983352_-	hypothetical protein	NA	NA	NA	NA	NA
AXN68607.1|1983393_1983615_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	93.2	3.1e-29
AXN68608.1|1983611_1983902_-	hypothetical protein	NA	NA	NA	NA	NA
AXN68609.1|1983898_1985083_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	68.1	8.3e-161
AXN68610.1|1985264_1986668_-	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	66.5	1.4e-175
AXN68611.1|1986689_1987463_-	hypothetical protein	NA	NA	NA	NA	NA
AXN68612.1|1987472_1987850_-	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	76.4	9.6e-47
AXN68613.1|1987870_1988185_-	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	77.7	1.2e-42
AXN68614.1|1988384_1990178_-	ATP-dependent helicase	NA	E3T5J8	Cafeteria_roenbergensis_virus	23.8	6.9e-26
>prophage 9
CP031537	Staphylococcus aureus strain WCH-SK2 chromosome, complete genome	2914635	2318694	2326514	2914635		Hokovirus(16.67%)	10	NA	NA
AXN68914.1|2318694_2319750_-	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
AXN68915.1|2319749_2320436_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AXN68916.1|2320410_2320884_-	DoxX family protein	NA	NA	NA	NA	NA
AXN68917.1|2321225_2321666_-	hypothetical protein	NA	NA	NA	NA	NA
AXN68918.1|2321945_2322530_-	hypothetical protein	NA	NA	NA	NA	NA
AXN68919.1|2322628_2323342_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AXN68920.1|2323345_2323765_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AXN68921.1|2323766_2324435_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AXN68922.1|2324785_2325379_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AXN68923.1|2325362_2326514_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 10
CP031537	Staphylococcus aureus strain WCH-SK2 chromosome, complete genome	2914635	2338485	2353315	2914635		uncultured_Caudovirales_phage(50.0%)	18	NA	NA
AXN68932.1|2338485_2339544_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
AXN68933.1|2339894_2340437_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AXN68934.1|2340608_2340704_+	hypothetical protein	NA	NA	NA	NA	NA
AXN68935.1|2341116_2342034_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
AXN68936.1|2342124_2342226_+	hypothetical protein	NA	NA	NA	NA	NA
AXN68937.1|2342303_2343809_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AXN68938.1|2343874_2344120_-	hypothetical protein	NA	NA	NA	NA	NA
AXN68939.1|2344149_2344650_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AXN68940.1|2344669_2345536_-	DMT family transporter	NA	NA	NA	NA	NA
AXN68941.1|2345920_2346187_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
AXN68942.1|2346336_2346735_+	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AXN68943.1|2346697_2348803_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AXN68944.1|2348920_2349892_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AXN69575.1|2350120_2350228_+	hypothetical protein	NA	NA	NA	NA	NA
AXN68945.1|2350448_2350604_+	hypothetical protein	NA	NA	NA	NA	NA
AXN69576.1|2350642_2351614_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
AXN68946.1|2351600_2352557_+	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AXN68947.1|2352553_2353315_+	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 11
CP031537	Staphylococcus aureus strain WCH-SK2 chromosome, complete genome	2914635	2385836	2394560	2914635	protease,transposase	Streptococcus_phage(33.33%)	8	NA	NA
AXN68978.1|2385836_2386772_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	2.9e-84
AXN68979.1|2387098_2387308_-	hypothetical protein	NA	NA	NA	NA	NA
AXN68980.1|2387651_2388563_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
AXN68981.1|2388559_2389555_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
AXN68982.1|2389664_2390609_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
AXN68983.1|2391181_2391769_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
AXN68984.1|2392011_2392914_-	epimerase	NA	NA	NA	NA	NA
AXN68985.1|2393387_2394560_-|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 12
CP031537	Staphylococcus aureus strain WCH-SK2 chromosome, complete genome	2914635	2405450	2450134	2914635	integrase,transposase,terminase,coat	Staphylococcus_phage(58.33%)	54	2396310:2396324	2453176:2453190
2396310:2396324	attL	AAAAAATCAGCCTGT	NA	NA	NA	NA
AXN68996.1|2405450_2407823_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.2	2.7e-94
AXN68997.1|2407844_2408309_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
AXN68998.1|2408871_2409978_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	44.7	3.7e-78
AXN68999.1|2409967_2410771_-	XRE family transcriptional regulator	NA	A0A2H4JC02	uncultured_Caudovirales_phage	55.9	5.3e-10
AXN69000.1|2410906_2411110_+	transcriptional regulator	NA	NA	NA	NA	NA
AXN69001.1|2411145_2411364_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXN69002.1|2411375_2411522_+	pathogenicity island protein	NA	NA	NA	NA	NA
AXN69003.1|2411514_2411724_+	pathogenicity island protein	NA	Q4ZE76	Staphylococcus_phage	97.1	5.3e-31
AXN69004.1|2411726_2412047_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
AXN69005.1|2412110_2412980_+	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	93.4	5.3e-157
AXN69006.1|2412996_2414466_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	96.7	1.7e-280
AXN69007.1|2414744_2415107_+	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	95.8	4.6e-62
AXN69577.1|2415108_2415372_+	hypothetical protein	NA	NA	NA	NA	NA
AXN69008.1|2415373_2416015_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	92.5	1.0e-109
AXN69009.1|2416722_2417067_+	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	91.7	1.3e-50
AXN69010.1|2417097_2417751_+	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	99.5	7.6e-116
AXN69011.1|2417803_2418331_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	100.0	6.8e-91
AXN69578.1|2418462_2418675_+	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	97.1	5.4e-31
AXN69012.1|2418671_2419241_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.7e-100
AXN69013.1|2419632_2420817_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	21.5	2.0e-05
AXN69014.1|2421057_2421612_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
AXN69015.1|2422104_2423019_+	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXN69016.1|2423076_2423925_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXN69017.1|2424441_2424723_+	hypothetical protein	NA	NA	NA	NA	NA
AXN69018.1|2424989_2425313_-	hypothetical protein	NA	NA	NA	NA	NA
AXN69579.1|2425328_2425475_-	hypothetical protein	NA	NA	NA	NA	NA
AXN69019.1|2426829_2426985_+	hypothetical protein	NA	NA	NA	NA	NA
AXN69020.1|2426992_2427514_+	hypothetical protein	NA	NA	NA	NA	NA
AXN69021.1|2427652_2428183_+	N-acetyltransferase	NA	NA	NA	NA	NA
AXN69022.1|2428445_2431247_+	MSCRAMM family adhesin clumping factor ClfA	NA	NA	NA	NA	NA
AXN69023.1|2431467_2432994_+	coagulase	NA	NA	NA	NA	NA
AXN69024.1|2433344_2434367_+	extracellular matrix protein-binding adhesin Emp	NA	NA	NA	NA	NA
AXN69025.1|2434701_2435172_+	hypothetical protein	NA	NA	NA	NA	NA
AXN69026.1|2435512_2436199_+	thermonuclease	NA	A0A1P8CWK6	Bacillus_phage	54.2	3.8e-33
AXN69027.1|2436555_2436756_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
AXN69028.1|2437251_2437470_-	hypothetical protein	NA	NA	NA	NA	NA
AXN69029.1|2437531_2437816_-	hypothetical protein	NA	NA	NA	NA	NA
AXN69030.1|2437903_2438473_-	hypothetical protein	NA	NA	NA	NA	NA
AXN69031.1|2438660_2438849_-	hypothetical protein	NA	NA	NA	NA	NA
AXN69032.1|2438877_2439138_-	hypothetical protein	NA	NA	NA	NA	NA
AXN69033.1|2439478_2439682_+	hypothetical protein	NA	NA	NA	NA	NA
AXN69034.1|2439678_2439915_-	hypothetical protein	NA	NA	NA	NA	NA
AXN69580.1|2440160_2440721_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.4	3.8e-31
AXN69035.1|2440793_2441411_-	amino acid transporter	NA	NA	NA	NA	NA
AXN69036.1|2441565_2442060_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXN69037.1|2442458_2442881_-	organic hydroperoxide reductase OsmC/OhrA	NA	NA	NA	NA	NA
AXN69038.1|2443028_2443745_+	3-dehydroquinase	NA	W6LP76	Streptococcus_phage	30.6	3.0e-17
AXN69039.1|2443827_2444367_+	nitroreductase	NA	NA	NA	NA	NA
AXN69040.1|2444516_2444837_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	3.1e-06
AXN69041.1|2444980_2445337_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
AXN69042.1|2445494_2445875_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
AXN69043.1|2446775_2447861_+|transposase	transposase	transposase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
AXN69044.1|2447857_2449750_+|integrase	phage integrase family protein	integrase	NA	NA	NA	NA
AXN69045.1|2449756_2450134_+|transposase	transposase	transposase	NA	NA	NA	NA
2453176:2453190	attR	AAAAAATCAGCCTGT	NA	NA	NA	NA
>prophage 13
CP031537	Staphylococcus aureus strain WCH-SK2 chromosome, complete genome	2914635	2455285	2470093	2914635	integrase,terminase,coat	Staphylococcus_phage(89.47%)	23	2457820:2457838	2472381:2472399
AXN69052.1|2455285_2456311_+	methionine import ATP-binding protein MetN 2	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
AXN69053.1|2456303_2456999_+	ABC transporter permease	NA	NA	NA	NA	NA
AXN69054.1|2457016_2457838_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
2457820:2457838	attL	AGTTATTCCTGCTAAATAA	NA	NA	NA	NA
AXN69055.1|2457981_2459202_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.3	3.5e-98
AXN69056.1|2459289_2460018_-	exotoxin	NA	A0EX09	Staphylococcus_phage	32.3	2.4e-22
AXN69581.1|2460041_2460770_-	exotoxin	NA	A0EX09	Staphylococcus_phage	35.4	7.9e-29
AXN69057.1|2460944_2461679_-	XRE family transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	98.4	8.5e-132
AXN69058.1|2461828_2462041_+	XRE family transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	98.6	3.4e-33
AXN69059.1|2462041_2462314_+	helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	100.0	3.4e-46
AXN69582.1|2462325_2462472_+	pathogenicity island protein	NA	NA	NA	NA	NA
AXN69060.1|2462464_2462674_+	pathogenicity island protein	NA	Q4ZE76	Staphylococcus_phage	95.7	7.7e-30
AXN69061.1|2462676_2462970_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	61.8	1.8e-24
AXN69062.1|2463057_2463927_+	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	97.2	3.8e-163
AXN69063.1|2463943_2465401_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	96.7	1.4e-279
AXN69064.1|2465702_2466065_+	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	96.7	2.9e-64
AXN69065.1|2466066_2466351_+	pathogenicity island protein	NA	A0A1W6JQE4	Staphylococcus_phage	98.9	1.6e-49
AXN69066.1|2466347_2466989_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	94.8	2.7e-113
AXN69067.1|2467437_2467779_+	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	98.2	1.6e-56
AXN69068.1|2467790_2468369_+	pathogenicity island protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	40.0	3.3e-30
AXN69583.1|2468386_2468605_+	hypothetical protein	NA	NA	NA	NA	NA
AXN69069.1|2468655_2469183_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.0	1.6e-87
AXN69584.1|2469314_2469527_+	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	97.1	3.2e-31
AXN69070.1|2469523_2470093_+|terminase	terminase small subunit	terminase	A0A1W6JQF0	Staphylococcus_phage	98.4	1.2e-101
2472381:2472399	attR	AGTTATTCCTGCTAAATAA	NA	NA	NA	NA
>prophage 14
CP031537	Staphylococcus aureus strain WCH-SK2 chromosome, complete genome	2914635	2601456	2629933	2914635	protease,bacteriocin,transposase	Staphylococcus_phage(60.0%)	30	NA	NA
AXN69192.1|2601456_2602059_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AXN69193.1|2602975_2603077_+	hypothetical protein	NA	NA	NA	NA	NA
AXN69586.1|2603086_2603359_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
AXN69194.1|2603402_2605367_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
AXN69195.1|2605369_2605690_+	YxeA family protein	NA	NA	NA	NA	NA
AXN69196.1|2605686_2606328_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
AXN69197.1|2606415_2606706_-	hypothetical protein	NA	NA	NA	NA	NA
AXN69198.1|2606984_2607272_+	hypothetical protein	NA	NA	NA	NA	NA
AXN69199.1|2607277_2608759_+	glycosyltransferase	NA	NA	NA	NA	NA
AXN69200.1|2608847_2609204_-	DoxX family protein	NA	NA	NA	NA	NA
AXN69201.1|2609680_2610640_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXN69202.1|2610685_2610817_-	hypothetical protein	NA	NA	NA	NA	NA
AXN69203.1|2610880_2611171_-	NINE protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
AXN69204.1|2611260_2611812_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXN69205.1|2611863_2612802_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
AXN69206.1|2612952_2613057_+	hypothetical protein	NA	NA	NA	NA	NA
AXN69207.1|2613133_2614345_+	isochorismate synthase	NA	NA	NA	NA	NA
AXN69208.1|2614331_2616005_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase	NA	NA	NA	NA	NA
AXN69209.1|2615991_2616795_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
AXN69210.1|2616787_2617609_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
AXN69211.1|2617847_2618177_-	staphostatin B	NA	NA	NA	NA	NA
AXN69212.1|2618214_2619396_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
AXN69213.1|2619477_2620488_-|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	32.3	4.8e-16
AXN69214.1|2621015_2622170_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AXN69215.1|2622365_2623376_-	acyltransferase	NA	NA	NA	NA	NA
AXN69216.1|2623528_2623948_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXN69217.1|2623974_2624085_+	hypothetical protein	NA	NA	NA	NA	NA
AXN69218.1|2624154_2627925_-	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA	A0A1J0MFB0	Staphylococcus_phage	37.6	1.1e-54
AXN69219.1|2628152_2628587_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXN69220.1|2628760_2629933_+|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 15
CP031537	Staphylococcus aureus strain WCH-SK2 chromosome, complete genome	2914635	2640714	2649187	2914635		Synechococcus_phage(33.33%)	9	NA	NA
AXN69231.1|2640714_2641197_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
AXN69232.1|2641183_2642308_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AXN69233.1|2642311_2643016_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AXN69234.1|2643015_2643279_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AXN69235.1|2643280_2643952_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AXN69236.1|2643944_2646134_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
AXN69237.1|2646112_2647597_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
AXN69238.1|2647589_2648618_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
AXN69239.1|2648620_2649187_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 16
CP031537	Staphylococcus aureus strain WCH-SK2 chromosome, complete genome	2914635	2908548	2914537	2914635	head,transposase	Staphylococcus_phage(83.33%)	9	NA	NA
AXN69484.1|2908548_2908746_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
AXN69485.1|2909434_2909659_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	4.3e-18
AXN69486.1|2909951_2910158_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
AXN69487.1|2910614_2911787_-|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXN69488.1|2912190_2912295_+	hypothetical protein	NA	NA	NA	NA	NA
AXN69489.1|2912727_2912913_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
AXN69490.1|2913424_2913529_+	hypothetical protein	NA	NA	NA	NA	NA
AXN69491.1|2913483_2913657_+	hypothetical protein	NA	NA	NA	NA	NA
AXN69595.1|2914111_2914537_+|head	phage head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	82.1	1.6e-13
