assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003413625.1_ASM341362v1	CP031653	Escherichia coli strain UK_Dog_Liverpool chromosome, complete genome	1	708069-708208	1	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	49	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|336aa|up_9|CP031653.1_700534_701542_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|293aa|up_8|CP031653.1_701747_702626_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|up_7|CP031653.1_702634_703630_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|up_6|CP031653.1_703838_704363_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|up_5|CP031653.1_704356_704860_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|101aa|up_4|CP031653.1_704846_705149_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|up_3|CP031653.1_705199_705643_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|up_2|CP031653.1_705622_706141_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|up_1|CP031653.1_706268_706904_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|347aa|up_0|CP031653.1_706976_708017_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|192aa|down_0|CP031653.1_708221_708797_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|down_1|CP031653.1_708806_709397_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|132aa|down_2|CP031653.1_709416_709812_-	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|679aa|down_3|CP031653.1_709769_711806_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|287aa|down_4|CP031653.1_711870_712731_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|364aa|down_5|CP031653.1_712773_713865_-	pfam00419, Fimbrial, Fimbrial protein	NA|791aa|down_6|CP031653.1_713875_716248_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|287aa|down_7|CP031653.1_717159_718020_-	PRK12738, kbaY, tagatose-bisphosphate aldolase subunit KbaY	NA|385aa|down_8|CP031653.1_718032_719187_-	TIGR02815, agaS_fam, putative sugar isomerase, AgaS family	NA|378aa|down_9|CP031653.1_719537_720671_-	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
GCA_003413625.1_ASM341362v1	CP031653	Escherichia coli strain UK_Dog_Liverpool chromosome, complete genome	2	733203-733454	1	PILER-CR	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTTGGAGGAGCAGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAA	54	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|101aa|up_8|CP031653.1_724567_724870_-,NA|180aa|down_1|CP031653.1_734961_735501_-	NA|427aa|up_9|CP031653.1_723273_724554_-	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional	NA|101aa|up_8|CP031653.1_724567_724870_-	NA	NA|270aa|up_7|CP031653.1_724802_725612_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|155aa|up_6|CP031653.1_725666_726131_-	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system	NA|112aa|up_5|CP031653.1_726130_726466_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_4|CP031653.1_726614_728186_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|445aa|up_3|CP031653.1_728560_729895_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|257aa|up_2|CP031653.1_729910_730681_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|CP031653.1_730710_731601_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|CP031653.1_731697_732843_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|396aa|down_0|CP031653.1_733752_734940_-	PRK09716, PRK09716, YhaC family protein	NA|180aa|down_1|CP031653.1_734961_735501_-	NA	NA|115aa|down_2|CP031653.1_735756_736101_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|down_3|CP031653.1_736289_737228_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_4|CP031653.1_737326_738316_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_5|CP031653.1_738337_739669_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_6|CP031653.1_739694_740903_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_7|CP031653.1_740936_743231_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|down_8|CP031653.1_743244_743634_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|down_9|CP031653.1_743705_745070_+	PRK15040, PRK15040, L-serine ammonia-lyase
GCA_003413625.1_ASM341362v1	CP031653	Escherichia coli strain UK_Dog_Liverpool chromosome, complete genome	3	748035-748152	2	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|55aa|down_0|CP031653.1_748225_748390_-	NA|115aa|up_9|CP031653.1_735756_736101_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|CP031653.1_736289_737228_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|CP031653.1_737326_738316_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|CP031653.1_738337_739669_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|CP031653.1_739694_740903_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|CP031653.1_740936_743231_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|CP031653.1_743244_743634_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|CP031653.1_743705_745070_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|CP031653.1_745344_746676_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|CP031653.1_746703_748014_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|CP031653.1_748225_748390_-	NA	NA|234aa|down_1|CP031653.1_748412_749114_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|CP031653.1_749218_750115_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|CP031653.1_750165_750522_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|CP031653.1_750763_751129_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|CP031653.1_751421_752408_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|CP031653.1_752477_752960_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|CP031653.1_753055_753355_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|CP031653.1_753344_753749_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|CP031653.1_753751_754057_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCA_003413625.1_ASM341362v1	CP031653	Escherichia coli strain UK_Dog_Liverpool chromosome, complete genome	4	1121484-1121756	2,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas5	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAA,GAGTTCCCCGCGCCAGCGGGGATAA,GAGTTCCCCGCGCCAGCGGGGATAAACCG	26,25,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	Unclear	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|47aa|up_1|CP031653.1_1120193_1120334_-,NA	NA|434aa|up_9|CP031653.1_1110890_1112192_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|CP031653.1_1112239_1114474_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|CP031653.1_1114551_1114800_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|CP031653.1_1114799_1115135_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|CP031653.1_1115205_1115997_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|CP031653.1_1116224_1117862_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|CP031653.1_1117949_1119248_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|CP031653.1_1119307_1120180_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|CP031653.1_1120193_1120334_-	NA	NA|224aa|up_0|CP031653.1_1120472_1121144_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|CP031653.1_1121801_1123280_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|CP031653.1_1123306_1124584_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|CP031653.1_1124902_1125688_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|CP031653.1_1125757_1127212_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|CP031653.1_1127305_1128643_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|CP031653.1_1128620_1129400_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|CP031653.1_1129396_1130257_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|CP031653.1_1130404_1130980_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|CP031653.1_1130996_1131257_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|CP031653.1_1131247_1132519_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCA_003413625.1_ASM341362v1	CP031653	Escherichia coli strain UK_Dog_Liverpool chromosome, complete genome	5	1143550-1144066	3,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas5,cas6e,cas1,cas2	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Unclear	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|424aa|up_9|CP031653.1_1131247_1132519_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_8|CP031653.1_1132596_1132962_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|CP031653.1_1133277_1135077_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|CP031653.1_1135076_1136789_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|CP031653.1_1136862_1137597_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_4|CP031653.1_1137861_1138014_+	pfam01848, HOK_GEF, Hok/gef family	cas5|249aa|up_3|CP031653.1_1140864_1141611_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP031653.1_1141592_1142243_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|CP031653.1_1142239_1143163_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP031653.1_1143159_1143453_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP031653.1_1144147_1145185_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP031653.1_1145436_1146345_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP031653.1_1146346_1147774_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP031653.1_1147773_1148379_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP031653.1_1148428_1148752_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP031653.1_1148945_1149257_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP031653.1_1149275_1149986_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP031653.1_1149985_1150465_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP031653.1_1150461_1151511_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP031653.1_1151491_1152253_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_003413625.1_ASM341362v1	CP031653	Escherichia coli strain UK_Dog_Liverpool chromosome, complete genome	6	1668860-1668977	5	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|105aa|up_5|CP031653.1_1663940_1664255_-,NA|284aa|up_4|CP031653.1_1664936_1665788_-,NA	NA|420aa|up_9|CP031653.1_1658132_1659392_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_8|CP031653.1_1659381_1661010_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_7|CP031653.1_1661282_1662641_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_6|CP031653.1_1662645_1663722_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|105aa|up_5|CP031653.1_1663940_1664255_-	NA	NA|284aa|up_4|CP031653.1_1664936_1665788_-	NA	NA|69aa|up_3|CP031653.1_1666253_1666460_-	PRK09729, PRK09729, hypothetical protein; Provisional	NA|217aa|up_2|CP031653.1_1666674_1667325_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|CP031653.1_1667378_1667633_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|CP031653.1_1667632_1668763_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|CP031653.1_1668996_1671282_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|CP031653.1_1671977_1675730_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|CP031653.1_1675857_1676580_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|CP031653.1_1676726_1679354_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|CP031653.1_1679502_1681191_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|CP031653.1_1681187_1681811_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1535aa|down_6|CP031653.1_1681744_1686349_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|CP031653.1_1686349_1687999_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|CP031653.1_1688003_1688780_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|CP031653.1_1688853_1690038_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCA_003413625.1_ASM341362v1	CP031653	Escherichia coli strain UK_Dog_Liverpool chromosome, complete genome	7	2301840-2301963	6	CRISPRCasFinder	no	DEDDh	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|75aa|down_7|CP031653.1_2310548_2310773_-,NA|30aa|down_8|CP031653.1_2310859_2310949_+	NA|471aa|up_9|CP031653.1_2291294_2292707_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|CP031653.1_2293262_2293472_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|CP031653.1_2293927_2294554_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|CP031653.1_2294574_2296677_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|CP031653.1_2296680_2297328_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|CP031653.1_2297391_2298060_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|CP031653.1_2298056_2298842_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|CP031653.1_2298845_2299658_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|CP031653.1_2299669_2301274_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|CP031653.1_2301399_2301705_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|CP031653.1_2302277_2303534_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|CP031653.1_2303574_2304948_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|CP031653.1_2305162_2305804_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|CP031653.1_2305843_2306992_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|CP031653.1_2307282_2308494_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|CP031653.1_2308606_2309539_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|CP031653.1_2309535_2310561_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|CP031653.1_2310548_2310773_-	NA	NA|30aa|down_8|CP031653.1_2310859_2310949_+	NA	NA|390aa|down_9|CP031653.1_2311114_2312284_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCA_003413625.1_ASM341362v1	CP031653	Escherichia coli strain UK_Dog_Liverpool chromosome, complete genome	9	3312050-3312194	8	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|94aa|up_8|CP031653.1_3307435_3307717_+,NA|177aa|up_6|CP031653.1_3308247_3308778_-,NA|84aa|up_5|CP031653.1_3308668_3308920_-,NA|62aa|up_4|CP031653.1_3308974_3309160_-,NA|56aa|up_3|CP031653.1_3309092_3309260_+,NA|70aa|down_9|CP031653.1_3322914_3323124_-	NA|64aa|up_9|CP031653.1_3307233_3307425_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_8|CP031653.1_3307435_3307717_+	NA	NA|74aa|up_7|CP031653.1_3307815_3308037_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|177aa|up_6|CP031653.1_3308247_3308778_-	NA	NA|84aa|up_5|CP031653.1_3308668_3308920_-	NA	NA|62aa|up_4|CP031653.1_3308974_3309160_-	NA	NA|56aa|up_3|CP031653.1_3309092_3309260_+	NA	NA|73aa|up_2|CP031653.1_3309299_3309518_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|CP031653.1_3309495_3310566_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|CP031653.1_3310700_3311984_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|CP031653.1_3312217_3314479_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|CP031653.1_3314661_3316095_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|CP031653.1_3316170_3317223_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|CP031653.1_3317406_3318360_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|CP031653.1_3318400_3319396_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|CP031653.1_3319550_3320369_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|CP031653.1_3320369_3321428_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|CP031653.1_3321430_3322120_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|CP031653.1_3322119_3322893_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|70aa|down_9|CP031653.1_3322914_3323124_-	NA
GCA_003413625.1_ASM341362v1	CP031653	Escherichia coli strain UK_Dog_Liverpool chromosome, complete genome	10	3844572-3844725	9	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|76aa|up_4|CP031653.1_3840072_3840300_+,NA|150aa|down_8|CP031653.1_3854302_3854752_-	NA|134aa|up_9|CP031653.1_3835491_3835893_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_8|CP031653.1_3835950_3837195_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_7|CP031653.1_3837286_3837745_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_6|CP031653.1_3838005_3839463_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|89aa|up_5|CP031653.1_3839819_3840086_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|76aa|up_4|CP031653.1_3840072_3840300_+	NA	NA|151aa|up_3|CP031653.1_3840392_3840845_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_2|CP031653.1_3840841_3841897_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|263aa|up_1|CP031653.1_3841967_3842756_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|CP031653.1_3842697_3844437_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|CP031653.1_3844754_3845252_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|253aa|down_1|CP031653.1_3845427_3846186_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|247aa|down_2|CP031653.1_3846477_3847218_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_3|CP031653.1_3847188_3847956_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_4|CP031653.1_3848161_3848740_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_5|CP031653.1_3848979_3851424_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_6|CP031653.1_3851466_3851940_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_7|CP031653.1_3852093_3852864_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|150aa|down_8|CP031653.1_3854302_3854752_-	NA	NA|1020aa|down_9|CP031653.1_3854763_3857823_-	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]
GCA_003413625.1_ASM341362v1	CP031653	Escherichia coli strain UK_Dog_Liverpool chromosome, complete genome	11	4034753-4034868	10	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|393aa|up_9|CP031653.1_4022768_4023947_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|CP031653.1_4024048_4024180_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|CP031653.1_4024268_4025924_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|CP031653.1_4026087_4027071_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|CP031653.1_4027046_4028657_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|CP031653.1_4028640_4029339_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|CP031653.1_4029452_4030217_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|CP031653.1_4030302_4031181_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|CP031653.1_4031519_4033220_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|CP031653.1_4033230_4034733_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|CP031653.1_4034932_4035628_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|CP031653.1_4035702_4038054_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|CP031653.1_4038218_4041125_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|CP031653.1_4041136_4041796_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|CP031653.1_4041912_4042728_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|CP031653.1_4042982_4045337_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|CP031653.1_4045389_4046676_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|CP031653.1_4046675_4047665_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|CP031653.1_4047661_4048483_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|CP031653.1_4048485_4048863_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
