The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 2
CP031679	Haemophilus influenzae strain P676-2514 chromosome, complete genome	1858630	1266106	1355294	1858630	protease,capsid,tRNA,terminase,head,tail,lysis,plate,portal	Mannheimia_phage(39.39%)	82	NA	NA
AXP65016.1|1266106_1268077_+|tRNA	tRNA(Met) cytidine acetyltransferase	tRNA	NA	NA	NA	NA
AXP65017.1|1268348_1271789_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
AXP65018.1|1271841_1273233_-|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	31.2	7.2e-23
AXP65019.1|1273426_1274317_+	acetyl-CoA carboxylase carboxyl transferase subunit beta	NA	NA	NA	NA	NA
AXP65020.1|1274309_1275623_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AXP65021.1|1275910_1276591_-	vancomycin high temperature exclusion protein	NA	NA	NA	NA	NA
AXP65022.1|1276748_1277825_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AXP65023.1|1277879_1280522_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	32.3	2.1e-103
AXP65024.1|1280579_1280816_+	hypothetical protein	NA	NA	NA	NA	NA
AXP65025.1|1281121_1282885_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
AXP65589.1|1283021_1283414_-	hypothetical protein	NA	NA	NA	NA	NA
AXP65026.1|1283733_1284540_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
AXP65027.1|1284591_1285293_+	hydroxyacylglutathione hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	28.5	1.3e-07
AXP65028.1|1285336_1286197_-	S-adenosyl-L-methionine-dependent methyltransferase TehB	NA	NA	NA	NA	NA
AXP65029.1|1286307_1288356_-|tRNA	methionine--tRNA ligase	tRNA	A0A2K9V939	Bandra_megavirus	29.3	2.2e-60
AXP65030.1|1288506_1289619_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AXP65031.1|1289665_1290328_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
AXP65032.1|1290432_1291116_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA	NA
AXP65033.1|1291823_1292834_-|portal	phage portal protein	portal	Q19UT6	Mannheimia_phage	60.4	1.8e-116
AXP65034.1|1292843_1294619_-|terminase	terminase	terminase	A0A0M3LRV4	Mannheimia_phage	65.4	1.9e-217
AXP65035.1|1294783_1295608_+|capsid	capsid scaffolding protein	capsid	A0A0M3LNM2	Mannheimia_phage	62.7	3.1e-66
AXP65036.1|1295628_1296678_+|capsid	phage major capsid protein, P2 family	capsid	Q19UT3	Mannheimia_phage	51.3	2.8e-88
AXP65037.1|1296689_1297340_+|terminase	terminase	terminase	Q19US0	Mannheimia_phage	46.0	4.1e-45
AXP65038.1|1297633_1298140_+|head	phage head protein	head	A0A0M3LNL8	Mannheimia_phage	51.0	2.4e-32
AXP65039.1|1298139_1298349_+|tail	phage tail protein	tail	NA	NA	NA	NA
AXP65040.1|1298350_1298572_+|lysis	lysis protein	lysis	NA	NA	NA	NA
AXP65041.1|1298564_1299083_+	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	46.0	1.2e-36
AXP65042.1|1299067_1299418_+	chemotaxis protein	NA	NA	NA	NA	NA
AXP65043.1|1299332_1299596_+	hypothetical protein	NA	NA	NA	NA	NA
AXP65044.1|1299592_1299808_+	TraR/DksA family transcriptional regulator	NA	A0A0M3LS11	Mannheimia_phage	47.9	1.1e-10
AXP65045.1|1299804_1300275_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	47.8	5.6e-28
AXP65046.1|1300274_1300736_+	phage virion morphogenesis protein	NA	A0A2H4J927	uncultured_Caudovirales_phage	48.9	4.4e-25
AXP65047.1|1300736_1301084_-	hypothetical protein	NA	NA	NA	NA	NA
AXP65048.1|1301187_1301370_+	hypothetical protein	NA	Q19UR2	Mannheimia_phage	47.8	8.8e-06
AXP65049.1|1301380_1301692_-	hypothetical protein	NA	NA	NA	NA	NA
AXP65050.1|1301794_1301968_+	hypothetical protein	NA	Q19UR2	Mannheimia_phage	53.3	3.2e-05
AXP65051.1|1301945_1302206_-	hypothetical protein	NA	NA	NA	NA	NA
AXP65052.1|1305272_1305725_+	hypothetical protein	NA	NA	NA	NA	NA
AXP65053.1|1305822_1306380_+	hypothetical protein	NA	NA	NA	NA	NA
AXP65054.1|1306388_1306817_+	hypothetical protein	NA	NA	NA	NA	NA
AXP65055.1|1306920_1307520_+|plate	phage baseplate assembly protein V	plate	A0A0M3LPY9	Mannheimia_phage	64.5	1.8e-42
AXP65056.1|1307521_1307860_+|plate	baseplate assembly protein W	plate	Q19UQ6	Mannheimia_phage	56.6	3.4e-19
AXP65057.1|1307856_1308771_+|plate	baseplate assembly protein	plate	Q19UQ5	Mannheimia_phage	58.6	7.4e-93
AXP65058.1|1308760_1309297_+|tail	phage tail protein I	tail	M1T2R2	Escherichia_phage	53.1	5.4e-51
AXP65059.1|1309305_1311828_+|tail	phage tail protein	tail	Q94MY0	Haemophilus_virus	65.4	2.2e-243
AXP65060.1|1311839_1312442_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	89.5	3.2e-92
AXP65061.1|1312438_1312942_+	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	63.6	1.7e-51
AXP65062.1|1312997_1313819_+	hypothetical protein	NA	NA	NA	NA	NA
AXP65063.1|1313832_1314201_+	hypothetical protein	NA	NA	NA	NA	NA
AXP65590.1|1314217_1315357_+	hypothetical protein	NA	NA	NA	NA	NA
AXP65064.1|1315366_1315894_+	hypothetical protein	NA	NA	NA	NA	NA
AXP65065.1|1315897_1316662_+	hypothetical protein	NA	NA	NA	NA	NA
AXP65066.1|1318323_1318779_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
AXP65067.1|1318795_1320283_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
AXP65068.1|1320294_1322829_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	26.4	1.8e-27
AXP65591.1|1322907_1326075_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	30.6	9.5e-79
AXP65069.1|1326076_1327123_-	hypothetical protein	NA	NA	NA	NA	NA
AXP65070.1|1327115_1328381_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
AXP65071.1|1328373_1330044_-	SAM-dependent DNA methyltransferase	NA	A0A2H4PQP4	Staphylococcus_phage	30.5	1.4e-49
AXP65072.1|1330208_1330595_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
AXP65073.1|1330594_1331515_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
AXP65074.1|1331595_1332729_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
AXP65075.1|1332761_1333601_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	38.9	6.1e-41
AXP65076.1|1333727_1334513_-	hypothetical protein	NA	NA	NA	NA	NA
AXP65077.1|1334503_1334884_-	hypothetical protein	NA	NA	NA	NA	NA
AXP65078.1|1334880_1336080_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	31.6	2.2e-60
AXP65079.1|1336081_1336543_-	thermonuclease family protein	NA	A0A0R6PHV6	Moraxella_phage	47.0	5.9e-30
AXP65080.1|1336678_1337101_+	hypothetical protein	NA	NA	NA	NA	NA
AXP65081.1|1337119_1337815_+|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
AXP65082.1|1337907_1339293_+	deoxyguanosinetriphosphate triphosphohydrolase family protein	NA	NA	NA	NA	NA
AXP65083.1|1339386_1341330_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	29.8	3.2e-53
AXP65084.1|1341410_1342493_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
AXP65085.1|1342623_1343394_-	spermidine/putrescine ABC transporter permease PotC	NA	NA	NA	NA	NA
AXP65086.1|1343393_1344254_-	spermidine/putrescine ABC transporter permease	NA	Q6GZ02	Mycoplasma_phage	28.2	4.5e-15
AXP65087.1|1344237_1345386_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	NA	Q6GZ03	Mycoplasma_phage	37.1	1.9e-29
AXP65088.1|1345652_1346891_+	peptidase T	NA	NA	NA	NA	NA
AXP65089.1|1347462_1347945_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
AXP65090.1|1348218_1349097_+	cytidine deaminase	NA	NA	NA	NA	NA
AXP65091.1|1349139_1350105_-|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
AXP65092.1|1350101_1351616_-	sodium/proline symporter PutP	NA	NA	NA	NA	NA
AXP65093.1|1351731_1353207_+	ribonuclease G	NA	NA	NA	NA	NA
AXP65094.1|1353626_1355294_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	77.5	8.1e-255
>prophage 3
CP031679	Haemophilus influenzae strain P676-2514 chromosome, complete genome	1858630	1402281	1414325	1858630	tRNA	Acinetobacter_phage(42.86%)	11	NA	NA
AXP65593.1|1402281_1403286_-	phosphate ABC transporter substrate-binding protein PstS	NA	A0A222YW41	Synechococcus_phage	40.5	1.2e-51
AXP65125.1|1403743_1404292_+	non-heme ferritin	NA	NA	NA	NA	NA
AXP65126.1|1404307_1404805_+	non-heme ferritin	NA	NA	NA	NA	NA
AXP65594.1|1405037_1405802_+	glycosyltransferase	NA	A7IW34	Paramecium_bursaria_Chlorella_virus	29.1	1.5e-14
AXP65127.1|1405903_1407460_+	anthranilate synthase component I	NA	A0A0B5J984	Pandoravirus	33.2	2.4e-22
AXP65128.1|1407472_1408060_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	40.0	2.2e-34
AXP65129.1|1408108_1408495_+	tautomerase family protein	NA	NA	NA	NA	NA
AXP65130.1|1408547_1409549_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	40.0	1.2e-46
AXP65131.1|1409586_1411020_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	38.7	1.3e-35
AXP65132.1|1411150_1411426_+	hydrogenase maturation factor HybG	NA	NA	NA	NA	NA
AXP65133.1|1411460_1414325_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.5	2.7e-149
>prophage 4
CP031679	Haemophilus influenzae strain P676-2514 chromosome, complete genome	1858630	1423490	1439776	1858630	terminase,head,holin	Haemophilus_phage(42.86%)	24	NA	NA
AXP65145.1|1423490_1423667_-	DUF2213 domain-containing protein	NA	Q7Y5U2	Haemophilus_phage	93.1	8.5e-22
AXP65146.1|1423807_1425118_-|head	phage head morphogenesis protein	head	Q7Y5U5	Haemophilus_phage	77.9	6.9e-108
AXP65147.1|1425017_1426352_-	DUF1073 domain-containing protein	NA	Q7Y5U6	Haemophilus_phage	84.0	6.1e-213
AXP65595.1|1426353_1427628_-|terminase	PBSX family phage terminase large subunit	terminase	A0A220NQL3	Acinetobacter_phage	55.0	7.9e-125
AXP65148.1|1427683_1428196_-|terminase	terminase small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	39.2	1.0e-19
AXP65149.1|1428240_1428519_+	XRE family transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	66.2	6.5e-16
AXP65150.1|1428520_1428802_-	hypothetical protein	NA	Q776X1	Haemophilus_phage	73.3	9.4e-31
AXP65151.1|1428713_1429037_-	DUF2570 domain-containing protein	NA	Q7Y5U9	Haemophilus_phage	54.6	7.8e-21
AXP65152.1|1429029_1429632_-	glycoside hydrolase family 19 protein	NA	Q7Y5V0	Haemophilus_phage	53.4	3.7e-56
AXP65153.1|1429600_1429957_-|holin	phage holin, lambda family	holin	NA	NA	NA	NA
AXP65154.1|1430293_1430962_-	hypothetical protein	NA	D0UIM5	Aggregatibacter_phage	62.3	6.7e-67
AXP65155.1|1431319_1432285_+	hypothetical protein	NA	Q8HA04	Enterobacteria_phage	58.8	1.2e-88
AXP65156.1|1432334_1432706_-	hypothetical protein	NA	NA	NA	NA	NA
AXP65157.1|1432736_1433402_-	HNH endonuclease	NA	A0A2I7QND8	Vibrio_phage	42.8	2.2e-38
AXP65158.1|1434042_1434459_-	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	84.7	1.1e-62
AXP65159.1|1434495_1434720_-	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
AXP65160.1|1434716_1435358_-	replication P	NA	A0A1I9KFB0	Aeromonas_phage	24.9	8.2e-06
AXP65161.1|1435342_1436101_-	helix-turn-helix domain-containing protein	NA	D0UIL5	Aggregatibacter_phage	69.3	1.6e-61
AXP65162.1|1436097_1436772_-	hypothetical protein	NA	D0UIL6	Aggregatibacter_phage	67.9	6.9e-80
AXP65163.1|1436820_1437261_-	hypothetical protein	NA	A0A0U4B0E3	Pseudomonas_phage	32.2	1.5e-14
AXP65164.1|1437309_1437498_-	DNA-binding protein	NA	Q7Y5W4	Haemophilus_phage	93.5	6.5e-28
AXP65165.1|1437608_1438307_+	XRE family transcriptional regulator	NA	Q7Y5W5	Haemophilus_phage	84.0	9.3e-112
AXP65166.1|1438358_1439438_+	hypothetical protein	NA	NA	NA	NA	NA
AXP65167.1|1439440_1439776_+	DUF4325 domain-containing protein	NA	A0A2H4J4X6	uncultured_Caudovirales_phage	41.5	8.1e-13
>prophage 5
CP031679	Haemophilus influenzae strain P676-2514 chromosome, complete genome	1858630	1681280	1689789	1858630		uncultured_Caudovirales_phage(16.67%)	9	NA	NA
AXP65398.1|1681280_1681964_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	2.3e-54
AXP65399.1|1681956_1682382_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.0	2.3e-20
AXP65400.1|1682382_1683018_+	7-carboxy-7-deazaguanine synthase	NA	S4TZT1	uncultured_phage	30.3	8.7e-16
AXP65604.1|1683407_1683641_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
AXP65401.1|1683624_1685808_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	6.7e-116
AXP65402.1|1685927_1686899_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXP65403.1|1686913_1687801_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AXP65404.1|1687810_1688803_+	dipeptide transport ATP-binding protein DppD	NA	G3M9Y6	Bacillus_virus	30.8	2.0e-14
AXP65405.1|1688805_1689789_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.8	1.8e-20
>prophage 6
CP031679	Haemophilus influenzae strain P676-2514 chromosome, complete genome	1858630	1816746	1829045	1858630		Escherichia_phage(71.43%)	11	NA	NA
AXP65524.1|1816746_1818591_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.3	2.8e-22
AXP65525.1|1818715_1818994_-	copper chaperone	NA	NA	NA	NA	NA
AXP65607.1|1819002_1819320_-	hypothetical protein	NA	NA	NA	NA	NA
AXP65526.1|1819339_1820449_-	transglutaminase family protein	NA	NA	NA	NA	NA
AXP65527.1|1820701_1823125_+	twin-arginine translocation signal domain-containing protein	NA	A0A077SK27	Escherichia_phage	50.5	2.6e-222
AXP65528.1|1823135_1823753_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	57.8	5.8e-73
AXP65529.1|1823754_1824594_+	dimethyl sulfoxide reductase anchor subunit	NA	A0A077SK59	Escherichia_phage	31.9	1.1e-18
AXP65530.1|1824705_1825317_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	32.5	2.3e-21
AXP65531.1|1825316_1825817_+	ferredoxin-type protein NapF	NA	A0A077SLP0	Escherichia_phage	32.9	7.6e-15
AXP65532.1|1826094_1827453_+	B12-dependent methionine synthase	NA	NA	NA	NA	NA
AXP65533.1|1827479_1829045_+	RNA-directed DNA polymerase	NA	Q2P9X6	Enterobacteria_phage	33.3	1.5e-72
