The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031692	Haemophilus influenzae strain P595-8370 chromosome, complete genome	1833864	1224902	1303883	1833864	capsid,protease,head,tRNA,terminase,portal,tail,lysis,plate	Mannheimia_phage(45.0%)	82	NA	NA
AXP58095.1|1224902_1226747_+|tRNA	tRNA(Met) cytidine acetyltransferase	tRNA	NA	NA	NA	NA
AXP58096.1|1227018_1230459_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
AXP58097.1|1230511_1231903_-|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	31.2	7.2e-23
AXP58098.1|1232096_1232987_+	acetyl-CoA carboxylase, carboxyltransferase subunit beta	NA	NA	NA	NA	NA
AXP58099.1|1232979_1234293_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AXP58100.1|1234571_1235252_-	vancomycin high temperature exclusion protein	NA	NA	NA	NA	NA
AXP58101.1|1235409_1236486_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AXP58102.1|1236540_1239183_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	32.3	2.7e-103
AXP58103.1|1239240_1239477_+	hypothetical protein	NA	NA	NA	NA	NA
AXP58104.1|1239554_1239737_+	hypothetical protein	NA	NA	NA	NA	NA
AXP58105.1|1239765_1241529_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
AXP58106.1|1241643_1242045_-	hypothetical protein	NA	NA	NA	NA	NA
AXP58107.1|1241993_1242254_+	hypothetical protein	NA	NA	NA	NA	NA
AXP58108.1|1242253_1243018_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.8	1.0e-15
AXP58109.1|1243014_1243821_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
AXP58110.1|1243872_1244574_+	hydroxyacylglutathione hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	28.5	5.6e-08
AXP58111.1|1244624_1245485_-	SAM-dependent methyltransferase TehB	NA	NA	NA	NA	NA
AXP58112.1|1245597_1247646_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	29.3	1.9e-59
AXP58113.1|1247796_1248909_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AXP58114.1|1248955_1249618_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
AXP58115.1|1249724_1250408_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA	NA
AXP58116.1|1251787_1252798_-|portal	phage portal protein	portal	Q19UT6	Mannheimia_phage	61.9	1.8e-119
AXP58117.1|1252807_1254577_-|terminase	terminase	terminase	A0A0M3LRV4	Mannheimia_phage	64.6	1.5e-219
AXP58118.1|1254645_1255074_+	CopG family transcriptional regulator	NA	A0A0D4DCG1	Acinetobacter_phage	39.0	3.8e-15
AXP58119.1|1255166_1255346_-	hypothetical protein	NA	NA	NA	NA	NA
AXP58120.1|1255339_1255972_+	phage repressor protein	NA	D0UIM5	Aggregatibacter_phage	38.6	4.1e-34
AXP58121.1|1256149_1256956_+|capsid	capsid scaffolding protein	capsid	A0A0M3LNM2	Mannheimia_phage	58.6	2.5e-60
AXP58122.1|1256977_1258027_+|capsid	phage major capsid protein, P2 family	capsid	Q19UT3	Mannheimia_phage	51.9	5.7e-89
AXP58123.1|1258038_1258689_+|terminase	terminase	terminase	Q19US0	Mannheimia_phage	46.0	5.3e-45
AXP58124.1|1258981_1259488_+|head	phage head protein	head	A0A0M3LNL8	Mannheimia_phage	51.0	1.3e-33
AXP58125.1|1259487_1259697_+|tail	phage tail protein	tail	NA	NA	NA	NA
AXP58126.1|1259698_1259920_+|lysis	lysis protein	lysis	NA	NA	NA	NA
AXP58127.1|1259912_1260431_+	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	46.6	9.5e-37
AXP58128.1|1260680_1260944_+	hypothetical protein	NA	NA	NA	NA	NA
AXP58129.1|1260940_1261156_+	TraR/DksA family transcriptional regulator	NA	A0A0M3LS11	Mannheimia_phage	47.9	1.1e-10
AXP58130.1|1261152_1261623_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	44.6	2.8e-27
AXP58131.1|1261622_1262081_+	phage virion morphogenesis protein	NA	A0A2H4J927	uncultured_Caudovirales_phage	51.8	1.2e-27
AXP58132.1|1262058_1262319_-	hypothetical protein	NA	NA	NA	NA	NA
AXP58133.1|1262387_1265162_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	31.3	3.9e-84
AXP58134.1|1265383_1265836_+	hypothetical protein	NA	NA	NA	NA	NA
AXP58135.1|1265933_1266491_+	hypothetical protein	NA	NA	NA	NA	NA
AXP58136.1|1266499_1266928_+	hypothetical protein	NA	NA	NA	NA	NA
AXP58137.1|1267031_1267631_+|plate	phage baseplate assembly protein V	plate	A0A0M3LPY9	Mannheimia_phage	65.5	1.6e-43
AXP58138.1|1267632_1267971_+|plate	baseplate assembly protein W	plate	Q19UQ6	Mannheimia_phage	56.6	4.5e-19
AXP58139.1|1267967_1268882_+|plate	baseplate assembly protein	plate	Q19UQ5	Mannheimia_phage	59.2	6.7e-94
AXP58140.1|1268868_1269408_+|tail	phage tail protein I	tail	M1T2R2	Escherichia_phage	52.9	1.3e-49
AXP58141.1|1269416_1271912_+|tail	phage tail protein	tail	Q94MY0	Haemophilus_virus	73.6	1.1e-279
AXP58142.1|1271923_1272556_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	77.6	5.0e-80
AXP58143.1|1272552_1273044_+	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	62.9	1.5e-52
AXP58144.1|1273201_1274386_+|tail	phage tail protein	tail	A0A1S6KZY7	Salmonella_phage	48.7	3.5e-103
AXP58145.1|1274389_1274896_+|tail	phage major tail tube protein	tail	Q19UP8	Mannheimia_phage	59.5	5.4e-53
AXP58146.1|1274961_1275261_+|tail	phage tail assembly protein	tail	A4PE51	Ralstonia_virus	45.4	1.5e-13
AXP58147.1|1275260_1275407_+|tail	GpE family phage tail protein	tail	R9QCM4	Mannheimia_phage	57.4	2.9e-07
AXP58148.1|1275574_1276012_+	oxidoreductase	NA	A0A0M3LQ18	Mannheimia_phage	56.0	1.0e-39
AXP58149.1|1276011_1277205_+	phage late control D family protein	NA	R9QBT3	Mannheimia_phage	52.0	1.6e-103
AXP58150.1|1277244_1277772_-	hypothetical protein	NA	NA	NA	NA	NA
AXP58151.1|1277761_1278154_-	DUF4325 domain-containing protein	NA	NA	NA	NA	NA
AXP58152.1|1278135_1279128_-	hypothetical protein	NA	NA	NA	NA	NA
AXP58153.1|1279181_1279367_-	hypothetical protein	NA	NA	NA	NA	NA
AXP58154.1|1279377_1280550_-	hypothetical protein	NA	NA	NA	NA	NA
AXP58155.1|1280563_1281259_-	helix-turn-helix transcriptional regulator	NA	A0A0M3LPF9	Mannheimia_phage	38.8	2.0e-34
AXP58156.1|1281378_1281603_+	transcriptional regulator	NA	Q76H55	Enterobacteria_phage	55.9	7.0e-13
AXP58157.1|1281657_1281900_-	hypothetical protein	NA	NA	NA	NA	NA
AXP58158.1|1281937_1282234_-	hypothetical protein	NA	NA	NA	NA	NA
AXP58159.1|1282686_1283028_+	hypothetical protein	NA	NA	NA	NA	NA
AXP58160.1|1283090_1283333_+	hypothetical protein	NA	Q19UN6	Mannheimia_phage	68.1	1.2e-21
AXP58161.1|1283423_1283687_+	hypothetical protein	NA	NA	NA	NA	NA
AXP58162.1|1284110_1284353_+	hypothetical protein	NA	NA	NA	NA	NA
AXP58163.1|1284478_1284787_+	hypothetical protein	NA	NA	NA	NA	NA
AXP58164.1|1284796_1286983_+	replication endonuclease	NA	Q94N00	Haemophilus_virus	42.8	2.2e-167
AXP58165.1|1287038_1287548_+	hypothetical protein	NA	A0A0M3LTD8	Mannheimia_phage	42.6	4.8e-25
AXP58166.1|1287547_1287715_+	DNA-binding protein	NA	NA	NA	NA	NA
AXP58167.1|1287695_1288988_-	DUF4102 domain-containing protein	NA	A0A1B5FPC6	Escherichia_phage	33.0	1.1e-44
AXP58168.1|1290273_1290729_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
AXP58169.1|1290745_1292233_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
AXP58170.1|1292244_1294764_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	26.4	1.8e-27
AXP58171.1|1294842_1298010_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	27.3	8.0e-78
AXP58172.1|1298915_1299446_-	hypothetical protein	NA	NA	NA	NA	NA
AXP58173.1|1299447_1300752_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
AXP58174.1|1300744_1302412_-	SAM-dependent DNA methyltransferase	NA	A0A2H4PQP4	Staphylococcus_phage	30.5	2.4e-49
AXP58175.1|1302576_1302963_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
AXP58176.1|1302962_1303883_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
>prophage 2
CP031692	Haemophilus influenzae strain P595-8370 chromosome, complete genome	1833864	1392387	1398328	1833864		Mannheimia_phage(66.67%)	12	NA	NA
AXP58243.1|1392387_1392570_+	hypothetical protein	NA	A0A0M3LQV3	Mannheimia_phage	45.5	1.2e-05
AXP58244.1|1392613_1393063_-	CopG family transcriptional regulator	NA	NA	NA	NA	NA
AXP58245.1|1393094_1393277_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
AXP58246.1|1393433_1394045_-	hypothetical protein	NA	D0UIL6	Aggregatibacter_phage	45.7	6.8e-42
AXP58247.1|1394092_1394389_-	hypothetical protein	NA	Q7Y5W3	Haemophilus_phage	68.4	5.8e-31
AXP58248.1|1394409_1394616_-	XRE family transcriptional regulator	NA	A0A0M3LSY2	Mannheimia_phage	67.7	1.9e-17
AXP58249.1|1394746_1395403_+	LexA family transcriptional regulator	NA	A0A0M3LSL8	Mannheimia_phage	58.9	5.5e-66
AXP58250.1|1395470_1396400_+	hypothetical protein	NA	NA	NA	NA	NA
AXP58251.1|1396401_1396881_+	hypothetical protein	NA	NA	NA	NA	NA
AXP58252.1|1397355_1397526_-	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AXP58253.1|1397540_1397762_+	hypothetical protein	NA	NA	NA	NA	NA
AXP58254.1|1397971_1398328_+	hypothetical protein	NA	A0A0M3LPU3	Mannheimia_phage	48.6	4.7e-11
>prophage 3
CP031692	Haemophilus influenzae strain P595-8370 chromosome, complete genome	1833864	1646917	1655429	1833864		uncultured_Caudovirales_phage(16.67%)	9	NA	NA
AXP58491.1|1646917_1647601_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	5.1e-54
AXP58492.1|1647593_1648019_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.7	1.3e-20
AXP58493.1|1648019_1648655_+	7-carboxy-7-deazaguanine synthase	NA	S4TZT1	uncultured_phage	30.3	8.7e-16
AXP58494.1|1649047_1649281_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
AXP58495.1|1649264_1651448_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	3.0e-116
AXP58496.1|1651567_1652539_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXP58497.1|1652553_1653441_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXP58498.1|1653450_1654443_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	1.5e-14
AXP58499.1|1654445_1655429_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	1.4e-20
>prophage 4
CP031692	Haemophilus influenzae strain P595-8370 chromosome, complete genome	1833864	1782741	1791810	1833864		Escherichia_phage(83.33%)	9	NA	NA
AXP58622.1|1782741_1784586_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.6	1.6e-22
AXP58623.1|1784711_1784990_-	copper chaperone	NA	NA	NA	NA	NA
AXP58706.1|1784998_1785316_-	hypothetical protein	NA	NA	NA	NA	NA
AXP58624.1|1785335_1786445_-	transglutaminase family protein	NA	NA	NA	NA	NA
AXP58625.1|1786697_1789118_+	twin-arginine translocation signal domain-containing protein	NA	A0A077SK27	Escherichia_phage	50.7	1.3e-224
AXP58626.1|1789128_1789746_+	dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	57.3	7.5e-73
AXP58627.1|1789747_1790587_+	dimethyl sulfoxide reductase subunit C	NA	A0A077SK59	Escherichia_phage	31.4	7.2e-18
AXP58628.1|1790698_1791310_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	33.0	7.8e-22
AXP58629.1|1791309_1791810_+	ferredoxin-type protein NapF	NA	A0A077SLP0	Escherichia_phage	32.9	1.7e-14
