assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003425885.1_ASM342588v1	CP031661	Staphylococcus aureus strain 82 chromosome, complete genome	1	375218-375318	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|129aa|up_6|CP031661.1_367824_368211_-,NA|86aa|up_4|CP031661.1_369161_369419_-,NA|221aa|down_1|CP031661.1_376408_377071_-,NA|179aa|down_7|CP031661.1_383162_383699_-	NA|88aa|up_9|CP031661.1_365937_366201_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|84aa|up_8|CP031661.1_366500_366752_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|194aa|up_7|CP031661.1_367177_367759_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|129aa|up_6|CP031661.1_367824_368211_-	NA	NA|209aa|up_5|CP031661.1_368462_369089_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|86aa|up_4|CP031661.1_369161_369419_-	NA	NA|508aa|up_3|CP031661.1_369533_371057_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_2|CP031661.1_371072_371642_-	TIGR03137, AhpC, peroxiredoxin	NA|269aa|up_1|CP031661.1_372082_372889_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_0|CP031661.1_372969_374358_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|319aa|down_0|CP031661.1_375334_376291_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|CP031661.1_376408_377071_-	NA	NA|136aa|down_2|CP031661.1_377213_377621_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|CP031661.1_378133_378712_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|CP031661.1_378711_379980_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|CP031661.1_380017_381484_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|CP031661.1_381508_383050_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|CP031661.1_383162_383699_-	NA	NA|235aa|down_8|CP031661.1_384091_384796_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|CP031661.1_385194_385467_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCA_003425885.1_ASM342588v1	CP031661	Staphylococcus aureus strain 82 chromosome, complete genome	2	619765-619857	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|CP031661.1_616248_616356_+,NA|169aa|down_4|CP031661.1_623604_624111_+,NA|239aa|down_5|CP031661.1_624272_624989_+	NA|313aa|up_9|CP031661.1_610449_611388_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|CP031661.1_611598_612135_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|CP031661.1_612304_612781_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|CP031661.1_612820_614116_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|169aa|up_5|CP031661.1_614158_614665_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|CP031661.1_615163_616174_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|CP031661.1_616248_616356_+	NA	NA|139aa|up_2|CP031661.1_616448_616865_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|CP031661.1_616861_618523_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|CP031661.1_618911_619547_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|CP031661.1_619925_620813_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|329aa|down_1|CP031661.1_620924_621911_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|CP031661.1_621965_622685_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|CP031661.1_622668_623469_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|CP031661.1_623604_624111_+	NA	NA|239aa|down_5|CP031661.1_624272_624989_+	NA	NA|263aa|down_6|CP031661.1_625157_625946_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|CP031661.1_626196_626571_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|CP031661.1_627518_628448_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|CP031661.1_628642_628867_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCA_003425885.1_ASM342588v1	CP031661	Staphylococcus aureus strain 82 chromosome, complete genome	3	776660-776740	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	8	776686-776714|776686-776714|776686-776714|776686-776714|776686-776714|776686-776714|776686-776714|776686-776714	CP031661.1_2780580-2780608|CP031661.1_336765-336737|CP031661.1_1791098-1791070|CP031661.1_825279-825307|CP031661.1_893738-893766|CP031661.1_1612353-1612381|CP031661.1_1970630-1970658|CP031661.1_2531233-2531205	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	cas3|361aa|up_9|CP031661.1_762204_763287_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_8|CP031661.1_763279_763954_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_7|CP031661.1_764014_764587_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_6|CP031661.1_765000_767532_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|331aa|up_5|CP031661.1_767964_768957_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|up_4|CP031661.1_769365_770205_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|CP031661.1_770378_771029_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|CP031661.1_771025_771262_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|CP031661.1_771530_773516_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|CP031661.1_773523_776370_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|CP031661.1_776976_777909_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|CP031661.1_777914_778754_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|CP031661.1_778761_779247_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|CP031661.1_779254_780694_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|CP031661.1_780760_781696_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|CP031661.1_782519_783431_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|CP031661.1_783427_784423_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|CP031661.1_784532_785477_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|CP031661.1_786049_786637_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|290aa|down_9|CP031661.1_786879_787749_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCA_003425885.1_ASM342588v1	CP031661	Staphylococcus aureus strain 82 chromosome, complete genome	4	825213-825294	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	825237-825270|825237-825270	CP031661.1_1299870-1299837|CP031661.1_1388279-1388312	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|CP031661.1_824115_824229_+,NA	NA|206aa|up_9|CP031661.1_818970_819588_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|CP031661.1_819742_820237_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|CP031661.1_820635_821058_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|CP031661.1_821205_821922_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|CP031661.1_822004_822544_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|CP031661.1_822693_823014_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|CP031661.1_823157_823514_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|CP031661.1_823671_824052_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|CP031661.1_824115_824229_+	NA	NA|293aa|up_0|CP031661.1_824230_825109_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|130aa|down_0|CP031661.1_825847_826237_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|CP031661.1_826229_826526_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|CP031661.1_826775_827801_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|CP031661.1_827793_828489_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|CP031661.1_828506_829328_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|CP031661.1_829681_829876_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|CP031661.1_830108_830960_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|CP031661.1_831287_832049_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|CP031661.1_832146_833454_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|CP031661.1_833568_834810_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCA_003425885.1_ASM342588v1	CP031661	Staphylococcus aureus strain 82 chromosome, complete genome	5	874068-874350	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	8	874098-874123|874098-874123|874098-874123|874098-874123|874098-874123|874212-874237|874212-874237|874212-874237	CP031661.1_874042-874067|CP031661.1_745192-745217|CP031661.1_1091679-1091704|CP031661.1_2780517-2780492|CP031661.1_2780573-2780548|CP031661.1_782113-782088|CP031661.1_1946466-1946441|CP031661.1_336603-336628	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|CP031661.1_862956_864453_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|CP031661.1_864445_864787_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|CP031661.1_864786_865215_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|CP031661.1_865207_867613_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|CP031661.1_867743_868127_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|CP031661.1_868190_868784_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|CP031661.1_869199_869577_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|CP031661.1_869938_871066_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|CP031661.1_871373_872564_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|CP031661.1_872672_873917_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|CP031661.1_874419_875349_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|CP031661.1_875590_876970_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|CP031661.1_876959_878165_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|CP031661.1_878516_879848_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|CP031661.1_880172_880748_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|CP031661.1_880752_881277_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|CP031661.1_881292_881868_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|CP031661.1_882027_885504_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|CP031661.1_885504_889158_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|CP031661.1_889323_890226_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_003425885.1_ASM342588v1	CP031661	Staphylococcus aureus strain 82 chromosome, complete genome	6	1007249-1007336	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_0|CP031661.1_1007345_1007480_-,NA|432aa|down_1|CP031661.1_1007631_1008927_+	NA|224aa|up_9|CP031661.1_995039_995711_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|CP031661.1_995703_997893_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|CP031661.1_997871_999356_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|CP031661.1_999348_1000377_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|CP031661.1_1000379_1000946_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|CP031661.1_1000960_1002439_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|CP031661.1_1002460_1003708_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|CP031661.1_1003972_1004779_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|CP031661.1_1004771_1006172_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|CP031661.1_1006186_1006762_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|CP031661.1_1007345_1007480_-	NA	NA|432aa|down_1|CP031661.1_1007631_1008927_+	NA	NA|391aa|down_2|CP031661.1_1009351_1010524_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|CP031661.1_1010577_1011120_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|CP031661.1_1011273_1011540_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|CP031661.1_1011542_1013261_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|CP031661.1_1013497_1013731_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|CP031661.1_1013928_1015290_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|CP031661.1_1015286_1016306_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|CP031661.1_1016438_1017101_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCA_003425885.1_ASM342588v1	CP031661	Staphylococcus aureus strain 82 chromosome, complete genome	7	2088467-2088555	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|95aa|up_9|CP031661.1_2083522_2083807_-,NA|121aa|up_8|CP031661.1_2083808_2084171_-,NA|120aa|up_4|CP031661.1_2087199_2087559_-,NA|71aa|up_3|CP031661.1_2087560_2087773_-,NA|49aa|up_2|CP031661.1_2087765_2087912_-,NA	NA|95aa|up_9|CP031661.1_2083522_2083807_-	NA	NA|121aa|up_8|CP031661.1_2083808_2084171_-	NA	NA|490aa|up_7|CP031661.1_2084456_2085926_-	pfam05272, VirE, Virulence-associated protein E	NA|290aa|up_6|CP031661.1_2085942_2086812_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|107aa|up_5|CP031661.1_2086878_2087199_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|120aa|up_4|CP031661.1_2087199_2087559_-	NA	NA|71aa|up_3|CP031661.1_2087560_2087773_-	NA	NA|49aa|up_2|CP031661.1_2087765_2087912_-	NA	NA|106aa|up_1|CP031661.1_2087908_2088226_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|CP031661.1_2088230_2088449_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|CP031661.1_2088621_2089296_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|CP031661.1_2089309_2090482_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|CP031661.1_2090550_2092167_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|CP031661.1_2092242_2092527_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|CP031661.1_2092701_2093445_+	pfam02517, Abi, CAAX protease self-immunity	NA|394aa|down_5|CP031661.1_2093469_2094651_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_6|CP031661.1_2094847_2095474_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|CP031661.1_2095834_2096620_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|CP031661.1_2097216_2097351_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|208aa|down_9|CP031661.1_2097532_2098156_+	smart00793, AgrB, Accessory gene regulator B
GCA_003425885.1_ASM342588v1	CP031661	Staphylococcus aureus strain 82 chromosome, complete genome	8	2215309-2215459	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|CP031661.1_2210180_2210411_-,NA|364aa|up_0|CP031661.1_2214199_2215291_+,NA	NA|237aa|up_9|CP031661.1_2205790_2206501_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP031661.1_2206621_2207065_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP031661.1_2207264_2207678_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP031661.1_2208135_2209509_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP031661.1_2210180_2210411_-	NA	NA|313aa|up_4|CP031661.1_2210441_2211380_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP031661.1_2211814_2212480_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP031661.1_2212631_2212952_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|CP031661.1_2212953_2213934_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP031661.1_2214199_2215291_+	NA	NA|68aa|down_0|CP031661.1_2216319_2216523_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|379aa|down_1|CP031661.1_2216581_2217718_-	pfam02037, SAP, SAP domain	NA|286aa|down_2|CP031661.1_2218802_2219660_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|CP031661.1_2219727_2220510_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|CP031661.1_2220741_2222547_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|CP031661.1_2223227_2224766_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|CP031661.1_2224800_2226933_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|CP031661.1_2226944_2227379_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|CP031661.1_2227378_2228485_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_9|CP031661.1_2236516_2237872_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_003425885.1_ASM342588v1	CP031661	Staphylococcus aureus strain 82 chromosome, complete genome	9	2339538-2339731	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	12	2339561-2339593|2339561-2339593|2339561-2339593|2339561-2339593|2339561-2339593|2339617-2339652|2339617-2339652|2339617-2339652|2339676-2339708|2339676-2339708|2339676-2339708|2339676-2339708	CP031661.1_782068-782100|CP031661.1_1299824-1299792|CP031661.1_1388325-1388357|CP031661.1_1946421-1946453|CP031661.1_2615235-2615267|CP031661.1_1791098-1791063|CP031661.1_1612353-1612388|CP031661.1_1970630-1970665|CP031661.1_782068-782100|CP031661.1_1299824-1299792|CP031661.1_1946421-1946453|CP031661.1_2615235-2615267	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_8|CP031661.1_2330065_2330230_+,NA|106aa|up_7|CP031661.1_2330474_2330792_+,NA|84aa|up_4|CP031661.1_2335916_2336168_+,NA	NA|303aa|up_9|CP031661.1_2329024_2329933_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_8|CP031661.1_2330065_2330230_+	NA	NA|106aa|up_7|CP031661.1_2330474_2330792_+	NA	NA|1056aa|up_6|CP031661.1_2330978_2334146_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_5|CP031661.1_2334262_2335528_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_4|CP031661.1_2335916_2336168_+	NA	NA|255aa|up_3|CP031661.1_2336159_2336924_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_2|CP031661.1_2337085_2337526_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_1|CP031661.1_2337518_2338730_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_0|CP031661.1_2338831_2339182_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|341aa|down_0|CP031661.1_2339872_2340895_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|CP031661.1_2340914_2341514_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|CP031661.1_2341520_2341754_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|CP031661.1_2341759_2342206_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|CP031661.1_2342219_2342705_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|CP031661.1_2342701_2343961_-	cd00887, MoeA, MoeA family	NA|169aa|down_6|CP031661.1_2344519_2345026_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_7|CP031661.1_2345056_2346061_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_8|CP031661.1_2346230_2346836_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|224aa|down_9|CP031661.1_2346836_2347508_-	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]
