The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031687	Haemophilus influenzae strain P641-4342 chromosome, complete genome	1849483	704951	711394	1849483	transposase,tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
AXP75831.1|704951_705677_-	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	A0A0N9SHZ9	Staphylococcus_phage	32.0	1.1e-25
AXP75832.1|705729_706248_-	DUF1295 domain-containing protein	NA	NA	NA	NA	NA
AXP75833.1|706467_708234_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SFI4	Hokovirus	30.3	3.2e-07
AXP75834.1|708295_709168_+	hypothetical protein	NA	A0A2D1GNG5	Pseudomonas_phage	26.5	3.4e-10
AXP75835.1|709370_709700_-	hypothetical protein	NA	F6MIM2	Haemophilus_phage	75.3	7.9e-37
AXP75836.1|710234_711056_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	61.2	7.9e-62
AXP75837.1|711040_711394_-	helix-turn-helix domain-containing protein	NA	A0A1B1P776	Bacillus_phage	37.2	3.7e-08
>prophage 2
CP031687	Haemophilus influenzae strain P641-4342 chromosome, complete genome	1849483	1224892	1275500	1849483	plate,tail,lysis,terminase,capsid,protease,head,tRNA,portal	Mannheimia_phage(57.14%)	52	NA	NA
AXP76255.1|1224892_1226863_+|tRNA	tRNA(Met) cytidine acetyltransferase	tRNA	NA	NA	NA	NA
AXP76256.1|1227134_1230575_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
AXP76257.1|1230627_1232019_-|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	31.2	7.2e-23
AXP76258.1|1232212_1233103_+	acetyl-CoA carboxylase carboxyl transferase subunit beta	NA	NA	NA	NA	NA
AXP76259.1|1233095_1234409_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AXP76260.1|1234696_1235377_-	vancomycin high temperature exclusion protein	NA	NA	NA	NA	NA
AXP76261.1|1235534_1236611_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AXP76262.1|1236665_1239308_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	32.3	2.1e-103
AXP76263.1|1239473_1241237_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
AXP76860.1|1241373_1241766_-	hypothetical protein	NA	NA	NA	NA	NA
AXP76264.1|1242085_1242892_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
AXP76265.1|1242943_1243645_+	hydroxyacylglutathione hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	29.1	3.3e-08
AXP76266.1|1243688_1244549_-	tellurite resistance methyltransferase TehB	NA	NA	NA	NA	NA
AXP76267.1|1244661_1246710_-|tRNA	methionine--tRNA ligase	tRNA	A0A2K9V939	Bandra_megavirus	29.3	2.2e-60
AXP76268.1|1246860_1247973_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AXP76269.1|1248019_1248682_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
AXP76270.1|1248786_1249470_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA	NA
AXP76271.1|1250177_1251188_-|portal	phage portal protein	portal	Q19UT6	Mannheimia_phage	60.4	1.8e-116
AXP76272.1|1251197_1252979_-|terminase	terminase	terminase	A0A0M3LRV4	Mannheimia_phage	65.4	7.7e-219
AXP76273.1|1253143_1253959_+|capsid	capsid scaffolding protein	capsid	A0A0M3LNM2	Mannheimia_phage	60.5	6.9e-66
AXP76274.1|1253979_1255029_+|capsid	phage major capsid protein, P2 family	capsid	Q19UT3	Mannheimia_phage	51.3	2.8e-88
AXP76275.1|1255040_1255691_+|terminase	terminase	terminase	Q19US0	Mannheimia_phage	46.0	4.1e-45
AXP76276.1|1255984_1256491_+|head	phage head protein	head	A0A0M3LNL8	Mannheimia_phage	51.0	2.8e-33
AXP76277.1|1256490_1256700_+|tail	phage tail protein	tail	NA	NA	NA	NA
AXP76278.1|1256701_1256923_+|lysis	lysis protein	lysis	NA	NA	NA	NA
AXP76279.1|1256915_1257434_+	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	46.6	9.5e-37
AXP76280.1|1257418_1257769_+	chemotaxis protein	NA	NA	NA	NA	NA
AXP76281.1|1257683_1257947_+	hypothetical protein	NA	NA	NA	NA	NA
AXP76282.1|1257943_1258159_+	TraR/DksA family transcriptional regulator	NA	A0A0M3LS11	Mannheimia_phage	47.9	1.1e-10
AXP76283.1|1258155_1258419_+	hypothetical protein	NA	NA	NA	NA	NA
AXP76284.1|1258384_1258855_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	45.3	7.3e-28
AXP76285.1|1258854_1259316_+	phage virion morphogenesis protein	NA	A0A2H4J927	uncultured_Caudovirales_phage	48.2	5.7e-25
AXP76286.1|1259316_1259664_-	hypothetical protein	NA	NA	NA	NA	NA
AXP76287.1|1259767_1259950_+	hypothetical protein	NA	Q19UR2	Mannheimia_phage	47.8	8.8e-06
AXP76288.1|1259960_1260272_-	hypothetical protein	NA	NA	NA	NA	NA
AXP76289.1|1260374_1260548_+	hypothetical protein	NA	Q19UR2	Mannheimia_phage	53.3	3.2e-05
AXP76290.1|1260525_1260786_-	hypothetical protein	NA	NA	NA	NA	NA
AXP76291.1|1263883_1264336_+	hypothetical protein	NA	NA	NA	NA	NA
AXP76292.1|1264433_1264991_+	hypothetical protein	NA	NA	NA	NA	NA
AXP76293.1|1264999_1265428_+	hypothetical protein	NA	NA	NA	NA	NA
AXP76294.1|1265531_1266131_+|plate	phage baseplate assembly protein V	plate	A0A0M3LPY9	Mannheimia_phage	66.0	4.2e-44
AXP76295.1|1266132_1266471_+|plate	baseplate assembly protein W	plate	Q19UQ6	Mannheimia_phage	56.6	3.4e-19
AXP76296.1|1266467_1267382_+|plate	baseplate assembly protein	plate	Q19UQ5	Mannheimia_phage	59.5	5.1e-94
AXP76297.1|1267371_1267908_+|tail	phage tail protein I	tail	M1T2R2	Escherichia_phage	52.5	1.6e-50
AXP76298.1|1267916_1270439_+|tail	phage tail protein	tail	Q94MY0	Haemophilus_virus	68.7	1.8e-253
AXP76299.1|1270450_1271050_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	89.5	7.8e-91
AXP76300.1|1271308_1272493_+|tail	phage tail protein	tail	A0A1S6KZY7	Salmonella_phage	48.2	2.3e-102
AXP76301.1|1272496_1273003_+|tail	phage major tail tube protein	tail	Q19UP8	Mannheimia_phage	59.5	5.4e-53
AXP76302.1|1273068_1273368_+|tail	phage tail assembly protein	tail	E5E3Q1	Burkholderia_phage	42.9	1.2e-12
AXP76303.1|1273367_1273514_+|tail	GpE family phage tail protein	tail	E5E3Q0	Burkholderia_phage	65.0	2.2e-07
AXP76304.1|1273842_1274280_+	oxidoreductase	NA	A0A0M3LQ18	Mannheimia_phage	57.3	9.1e-41
AXP76305.1|1274279_1275500_+	phage late control D family protein	NA	R9QBT3	Mannheimia_phage	57.5	2.7e-122
>prophage 3
CP031687	Haemophilus influenzae strain P641-4342 chromosome, complete genome	1849483	1372549	1384586	1849483	tRNA	Acinetobacter_phage(42.86%)	11	NA	NA
AXP76863.1|1372549_1373554_-	phosphate ABC transporter substrate-binding protein PstS	NA	A0A222YW41	Synechococcus_phage	40.5	1.2e-51
AXP76381.1|1374011_1374560_+	non-heme ferritin	NA	NA	NA	NA	NA
AXP76382.1|1374575_1375073_+	non-heme ferritin	NA	NA	NA	NA	NA
AXP76864.1|1375305_1376070_+	glycosyltransferase	NA	A7IW34	Paramecium_bursaria_Chlorella_virus	29.1	1.5e-14
AXP76383.1|1376175_1377732_+	anthranilate synthase component I	NA	A0A0B5J984	Pandoravirus	32.8	3.1e-22
AXP76384.1|1377744_1378326_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	39.4	4.5e-35
AXP76385.1|1378374_1378761_+	tautomerase family protein	NA	NA	NA	NA	NA
AXP76386.1|1378813_1379815_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	35.3	8.8e-47
AXP76387.1|1379852_1381286_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	38.0	1.2e-33
AXP76388.1|1381415_1381688_+	hydrogenase maturation factor HybG	NA	NA	NA	NA	NA
AXP76389.1|1381721_1384586_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.4	1.0e-148
>prophage 4
CP031687	Haemophilus influenzae strain P641-4342 chromosome, complete genome	1849483	1393974	1423283	1849483	terminase,head	Haemophilus_phage(23.33%)	40	NA	NA
AXP76401.1|1393974_1394151_-	DUF2213 domain-containing protein	NA	Q7Y5U2	Haemophilus_phage	93.1	8.5e-22
AXP76402.1|1394291_1395602_-|head	phage head morphogenesis protein	head	Q7Y5U5	Haemophilus_phage	78.3	5.3e-108
AXP76403.1|1395501_1396836_-	DUF1073 domain-containing protein	NA	Q7Y5U6	Haemophilus_phage	84.2	2.1e-213
AXP76404.1|1398167_1398680_-|terminase	terminase small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	39.2	1.0e-19
AXP76405.1|1398757_1399009_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5NR91	Burkholderia_phage	52.9	9.9e-16
AXP76406.1|1398992_1399340_+	XRE family transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	56.1	1.2e-22
AXP76407.1|1399341_1399623_-	hypothetical protein	NA	Q776X1	Haemophilus_phage	70.0	8.8e-29
AXP76408.1|1399534_1399870_-	DUF2570 domain-containing protein	NA	Q7Y5U9	Haemophilus_phage	52.1	9.8e-19
AXP76409.1|1399842_1400385_-	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	52.0	3.1e-46
AXP76410.1|1400365_1400617_-	hypothetical protein	NA	NA	NA	NA	NA
AXP76411.1|1401076_1401589_-	kinase	NA	NA	NA	NA	NA
AXP76412.1|1401997_1402819_-	NYN domain-containing protein	NA	A0A0R6PGY5	Moraxella_phage	40.9	3.1e-34
AXP76413.1|1403020_1403539_-	hypothetical protein	NA	NA	NA	NA	NA
AXP76414.1|1403578_1403944_-	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
AXP76415.1|1403945_1404533_-	recombinase NinG	NA	A0A2I7RAC0	Vibrio_phage	48.0	8.3e-37
AXP76416.1|1404625_1405042_-	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	86.1	1.9e-64
AXP76417.1|1405078_1405303_-	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
AXP76865.1|1405299_1405923_-	replication P	NA	D0UIL4	Aggregatibacter_phage	42.2	6.9e-34
AXP76418.1|1405937_1406714_-	hypothetical protein	NA	D0UIL5	Aggregatibacter_phage	62.6	1.3e-26
AXP76419.1|1406715_1406958_-	hypothetical protein	NA	M4NJW2	Sulfitobacter_phage	41.4	4.0e-06
AXP76420.1|1407114_1407546_+	hypothetical protein	NA	NA	NA	NA	NA
AXP76421.1|1407558_1407786_-	transcriptional regulator	NA	D0UIL8	Aggregatibacter_phage	50.8	1.5e-10
AXP76422.1|1407920_1408826_+	helix-turn-helix transcriptional regulator	NA	B6SCU0	Bacteriophage	40.8	6.8e-38
AXP76423.1|1408841_1409936_+	DUF262 domain-containing protein	NA	A0A0R6PKN1	Moraxella_phage	36.2	2.0e-60
AXP76424.1|1409935_1410595_+	hypothetical protein	NA	NA	NA	NA	NA
AXP76425.1|1410551_1411583_-	DNA cytosine methyltransferase	NA	A0A0R6PG08	Moraxella_phage	66.4	2.8e-128
AXP76426.1|1412593_1413424_+	KilA-N domain-containing protein	NA	Q4ZC41	Staphylococcus_virus	52.2	3.4e-76
AXP76427.1|1413928_1414546_+	KilA-N domain-containing protein	NA	A0A0P0ZCS0	Stx2-converting_phage	46.4	4.0e-18
AXP76428.1|1414635_1414986_+	hypothetical protein	NA	NA	NA	NA	NA
AXP76429.1|1414982_1415276_+	hypothetical protein	NA	NA	NA	NA	NA
AXP76430.1|1415287_1416199_+	recombinase	NA	A0A0M3LNU3	Mannheimia_phage	70.7	2.4e-115
AXP76431.1|1416543_1417155_+	hypothetical protein	NA	Q7Y5X0	Haemophilus_phage	60.6	5.8e-33
AXP76432.1|1417365_1418010_+	translocation protein TolB precursor	NA	A0A0M3LP90	Mannheimia_phage	71.4	6.8e-85
AXP76433.1|1418009_1418444_+	single-stranded DNA-binding protein	NA	A0A059WRL7	Vibrio_phage	36.2	1.3e-18
AXP76434.1|1418506_1419799_+	hypothetical protein	NA	A0A0U3TGV3	Pseudomonas_phage	61.9	8.8e-07
AXP76435.1|1419923_1420820_+	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	43.7	8.4e-57
AXP76436.1|1420816_1421062_+	hypothetical protein	NA	NA	NA	NA	NA
AXP76437.1|1421058_1421418_+	hypothetical protein	NA	NA	NA	NA	NA
AXP76438.1|1422215_1422863_+	hypothetical protein	NA	A0A0M3LNU4	Mannheimia_phage	40.0	1.0e-08
AXP76439.1|1422866_1423283_+	hypothetical protein	NA	W0B4E9	Acinetobacter_phage	39.2	3.5e-05
>prophage 5
CP031687	Haemophilus influenzae strain P641-4342 chromosome, complete genome	1849483	1662897	1671406	1849483		uncultured_Caudovirales_phage(16.67%)	9	NA	NA
AXP76666.1|1662897_1663581_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	2.3e-54
AXP76667.1|1663573_1663999_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.0	2.3e-20
AXP76668.1|1663999_1664635_+	7-carboxy-7-deazaguanine synthase	NA	S4TZT1	uncultured_phage	30.3	8.7e-16
AXP76873.1|1665024_1665258_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
AXP76669.1|1665241_1667425_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.7	1.0e-116
AXP76670.1|1667544_1668516_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXP76671.1|1668530_1669418_+	dipeptide ABC transporter permease DppC	NA	NA	NA	NA	NA
AXP76672.1|1669427_1670420_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	1.5e-14
AXP76673.1|1670422_1671406_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	1.1e-20
