assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003425985.1_ASM342598v1	CP022985	Mariniflexile sp. TRM1-10 chromosome, complete genome	1	912579-912707	1	CRISPRCasFinder	no		RT,DEDDh,cas3,csa3,WYL,c2c10_CAS-V-U3	Orphan	TTTCATGTGTTTATATCTATTCTTCTTCAATGGACACA	38	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,WYL,c2c10_CAS-V-U3	NA|33aa|up_5|CP022985.1_903111_903210_+,NA|402aa|up_0|CP022985.1_907459_908665_-,NA	NA|369aa|up_9|CP022985.1_899605_900712_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|125aa|up_8|CP022985.1_900814_901189_+	cd00454, TrHb1_N, truncated hemoglobins (TrHbs, 2/2Hb, 2/2 globins); group 1 (N)	NA|463aa|up_7|CP022985.1_901205_902594_+	pfam01565, FAD_binding_4, FAD binding domain	NA|155aa|up_6|CP022985.1_902635_903100_+	cd02235, cupin_BLL4011-like, Bradyrhizobium diazoefficiens BLL4011 and related proteins, cupin domain	NA|33aa|up_5|CP022985.1_903111_903210_+	NA	NA|131aa|up_4|CP022985.1_903521_903914_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|556aa|up_3|CP022985.1_904000_905668_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|333aa|up_2|CP022985.1_905671_906670_-	TIGR03182, Pyruvate_dehydrogenase_E1_component_subunit_alpha, pyruvate dehydrogenase E1 component, alpha subunit	NA|161aa|up_1|CP022985.1_906882_907365_-	TIGR01354, Cytidine_deaminase, cytidine deaminase, homotetrameric	NA|402aa|up_0|CP022985.1_907459_908665_-	NA	NA|563aa|down_0|CP022985.1_913197_914886_+	TIGR03524, gliding_motility_protein_GldJ, gliding motility-associated lipoprotein GldJ	NA|427aa|down_1|CP022985.1_914977_916258_+	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|406aa|down_2|CP022985.1_916555_917773_-	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|283aa|down_3|CP022985.1_917775_918624_-	TIGR02794, Protein_TolA, TolA protein	NA|131aa|down_4|CP022985.1_918686_919079_-	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR	NA|234aa|down_5|CP022985.1_919080_919782_-	pfam01618, MotA_ExbB, MotA/TolQ/ExbB proton channel family	NA|466aa|down_6|CP022985.1_919983_921381_-	PLN00137, PLN00137, NHAD transporter family protein; Provisional	NA|409aa|down_7|CP022985.1_921396_922623_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|355aa|down_8|CP022985.1_922956_924021_-	PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed	NA|381aa|down_9|CP022985.1_924115_925258_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases
GCA_003425985.1_ASM342598v1	CP022985	Mariniflexile sp. TRM1-10 chromosome, complete genome	3	2437442-2437539	3	CRISPRCasFinder	no		RT,DEDDh,cas3,csa3,WYL,c2c10_CAS-V-U3	Orphan	TCAAGAACCAAGAGAGCAGAATA	23	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,WYL,c2c10_CAS-V-U3	NA,NA	NA|508aa|up_9|CP022985.1_2423277_2424801_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|214aa|up_8|CP022985.1_2424825_2425467_-	pfam02577, DNase-RNase, Bifunctional nuclease	NA|320aa|up_7|CP022985.1_2425732_2426692_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|249aa|up_6|CP022985.1_2426813_2427560_-	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases	NA|326aa|up_5|CP022985.1_2427719_2428697_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|833aa|up_4|CP022985.1_2428763_2431262_+	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain	NA|198aa|up_3|CP022985.1_2431258_2431852_-	pfam04982, HPP, HPP family	NA|418aa|up_2|CP022985.1_2431960_2433214_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|562aa|up_1|CP022985.1_2433871_2435557_+	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|578aa|up_0|CP022985.1_2435666_2437400_+	TIGR00118, Probable_acetolactate_synthase_large_subunit, acetolactate synthase, large subunit, biosynthetic type	NA|178aa|down_0|CP022985.1_2437601_2438135_+	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed	NA|492aa|down_1|CP022985.1_2438150_2439626_+	PRK05225, PRK05225, ketol-acid reductoisomerase; Validated	NA|422aa|down_2|CP022985.1_2439699_2440965_+	PRK08639, PRK08639, threonine dehydratase; Validated	NA|531aa|down_3|CP022985.1_2441332_2442925_+	cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11	NA|206aa|down_4|CP022985.1_2443421_2444039_+	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|392aa|down_5|CP022985.1_2444081_2445257_+	cd01999, Argininosuccinate_Synthase, Argininosuccinate synthase	NA|326aa|down_6|CP022985.1_2445260_2446238_+	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|265aa|down_7|CP022985.1_2446349_2447144_+	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|382aa|down_8|CP022985.1_2447145_2448291_+	COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]	NA|399aa|down_9|CP022985.1_2448397_2449594_+	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional
GCA_003425985.1_ASM342598v1	CP022985	Mariniflexile sp. TRM1-10 chromosome, complete genome	5	3125032-3125115	5	CRISPRCasFinder	no		RT,DEDDh,cas3,csa3,WYL,c2c10_CAS-V-U3	Orphan	ACTGTGACTGAACACTGCAAACTG	24	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,WYL,c2c10_CAS-V-U3	NA|76aa|up_8|CP022985.1_3115809_3116037_+,NA|181aa|down_3|CP022985.1_3130940_3131483_+	NA|600aa|up_9|CP022985.1_3114008_3115808_+	TIGR01394, GTP-binding_protein_TypA/BipA_homolog, GTP-binding protein TypA/BipA	NA|76aa|up_8|CP022985.1_3115809_3116037_+	NA	NA|434aa|up_7|CP022985.1_3116201_3117503_+	cd13125, MATE_like_10, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|432aa|up_6|CP022985.1_3117539_3118835_+	cd13125, MATE_like_10, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|543aa|up_5|CP022985.1_3118821_3120450_+	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase	NA|361aa|up_4|CP022985.1_3120455_3121538_+	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH	NA|316aa|up_3|CP022985.1_3121551_3122499_-	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|296aa|up_2|CP022985.1_3122495_3123383_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|246aa|up_1|CP022985.1_3123382_3124120_-	pfam13489, Methyltransf_23, Methyltransferase domain	NA|228aa|up_0|CP022985.1_3124122_3124806_-	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|1009aa|down_0|CP022985.1_3125218_3128245_+	TIGR02795, Uncharacterized_protein_in_oprL_3'region, tol-pal system protein YbgF	NA|576aa|down_1|CP022985.1_3128491_3130219_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|194aa|down_2|CP022985.1_3130304_3130886_+	pfam06940, DUF1287, Domain of unknown function (DUF1287)	NA|181aa|down_3|CP022985.1_3130940_3131483_+	NA	NA|234aa|down_4|CP022985.1_3131515_3132217_-	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]	NA|165aa|down_5|CP022985.1_3132435_3132930_+	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain	NA|278aa|down_6|CP022985.1_3133173_3134007_+	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily	NA|386aa|down_7|CP022985.1_3133996_3135154_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|471aa|down_8|CP022985.1_3135413_3136826_-	pfam07075, DUF1343, Protein of unknown function (DUF1343)	NA|412aa|down_9|CP022985.1_3136834_3138070_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]
GCA_003425985.1_ASM342598v1	CP022985	Mariniflexile sp. TRM1-10 chromosome, complete genome	6	4629652-4629772	6	CRISPRCasFinder	no		RT,DEDDh,cas3,csa3,WYL,c2c10_CAS-V-U3	Orphan	TTTCATCTGTTAATATTTATTGTTTTTCAATT	32	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,WYL,c2c10_CAS-V-U3	NA|173aa|up_9|CP022985.1_4618581_4619100_-,NA|165aa|up_5|CP022985.1_4622478_4622973_+,NA|156aa|up_0|CP022985.1_4628241_4628709_-,NA|127aa|down_1|CP022985.1_4630902_4631283_+	NA|173aa|up_9|CP022985.1_4618581_4619100_-	NA	NA|318aa|up_8|CP022985.1_4619481_4620435_-	pfam02562, PhoH, PhoH-like protein	NA|285aa|up_7|CP022985.1_4620679_4621534_+	pfam01887, SAM_adeno_trans, S-adenosyl-l-methionine hydroxide adenosyltransferase	NA|238aa|up_6|CP022985.1_4621762_4622476_+	TIGR03518, ABC_transporter_permease_protein, gliding motility-associated ABC transporter permease protein GldF	NA|165aa|up_5|CP022985.1_4622478_4622973_+	NA	NA|556aa|up_4|CP022985.1_4622956_4624624_+	TIGR03521, gliding_motility_protein_GldG, gliding-associated putative ABC transporter substrate-binding component GldG	NA|373aa|up_3|CP022985.1_4624930_4626049_+	cd00140, beta_clamp, Beta clamp domain	NA|455aa|up_2|CP022985.1_4626231_4627596_+	pfam13586, DDE_Tnp_1_2, Transposase DDE domain	NA|113aa|up_1|CP022985.1_4627831_4628170_-	pfam09685, DUF4870, Domain of unknown function (DUF4870)	NA|156aa|up_0|CP022985.1_4628241_4628709_-	NA	NA|258aa|down_0|CP022985.1_4630117_4630891_+	pfam11306, DUF3108, Protein of unknown function (DUF3108)	NA|127aa|down_1|CP022985.1_4630902_4631283_+	NA	NA|351aa|down_2|CP022985.1_4631411_4632464_+	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|337aa|down_3|CP022985.1_4632526_4633537_+	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|455aa|down_4|CP022985.1_4633669_4635034_+	pfam13586, DDE_Tnp_1_2, Transposase DDE domain	NA|240aa|down_5|CP022985.1_4635452_4636172_-	TIGR04001, thiol_BshB1, bacillithiol biosynthesis deacetylase BshB1	NA|614aa|down_6|CP022985.1_4636512_4638354_+	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13)	NA|544aa|down_7|CP022985.1_4638389_4640021_+	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase	NA|225aa|down_8|CP022985.1_4640094_4640769_+	pfam10677, DUF2490, Protein of unknown function (DUF2490)	NA|200aa|down_9|CP022985.1_4640763_4641363_-	COG3548, COG3548, Predicted integral membrane protein [Function unknown]
GCA_003425985.1_ASM342598v1	CP022985	Mariniflexile sp. TRM1-10 chromosome, complete genome	7	4736351-4736473	7	CRISPRCasFinder	no	DEDDh	RT,DEDDh,cas3,csa3,WYL,c2c10_CAS-V-U3	Unclear	ACTAACTAATTCATATTAGCTTTAATTTTTGT	32	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,WYL,c2c10_CAS-V-U3	NA|133aa|up_6|CP022985.1_4729051_4729450_-,NA|180aa|up_0|CP022985.1_4735721_4736261_+,NA	NA|188aa|up_9|CP022985.1_4727098_4727662_+	cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|256aa|up_8|CP022985.1_4727775_4728543_+	pfam06738, ThrE, Putative threonine/serine exporter	NA|162aa|up_7|CP022985.1_4728548_4729034_+	pfam12821, ThrE_2, Threonine/Serine exporter, ThrE	NA|133aa|up_6|CP022985.1_4729051_4729450_-	NA	NA|382aa|up_5|CP022985.1_4729647_4730793_+	pfam06580, His_kinase, Histidine kinase	NA|239aa|up_4|CP022985.1_4730793_4731510_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|467aa|up_3|CP022985.1_4731584_4732985_-	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated	NA|534aa|up_2|CP022985.1_4733293_4734895_-	pfam03572, Peptidase_S41, Peptidase family S41	NA|153aa|up_1|CP022985.1_4735240_4735699_+	pfam01668, SmpB, SmpB protein	NA|180aa|up_0|CP022985.1_4735721_4736261_+	NA	NA|214aa|down_0|CP022985.1_4736538_4737180_-	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|333aa|down_1|CP022985.1_4737745_4738744_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|297aa|down_2|CP022985.1_4738788_4739679_+	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated	NA|413aa|down_3|CP022985.1_4739740_4740979_+	pfam06245, DUF1015, Protein of unknown function (DUF1015)	NA|222aa|down_4|CP022985.1_4741011_4741677_+	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins	DEDDh|396aa|down_5|CP022985.1_4741958_4743146_+	PRK07883, PRK07883, DEDD exonuclease domain-containing protein	NA|653aa|down_6|CP022985.1_4743249_4745208_+	pfam12969, DUF3857, Domain of Unknown Function with PDB structure (DUF3857)	NA|284aa|down_7|CP022985.1_4745233_4746085_+	pfam00520, Ion_trans, Ion transport protein	NA|301aa|down_8|CP022985.1_4746077_4746980_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|265aa|down_9|CP022985.1_4746982_4747777_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
GCA_003425985.1_ASM342598v1	CP022985	Mariniflexile sp. TRM1-10 chromosome, complete genome	8	4813406-4813560	8	CRISPRCasFinder	no		RT,DEDDh,cas3,csa3,WYL,c2c10_CAS-V-U3	Orphan	CTGAGCTTGTCGTTTGTCAGACTGAGCTTGTCGAAGTCC	39	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,WYL,c2c10_CAS-V-U3	NA|68aa|up_7|CP022985.1_4804037_4804241_+,NA|209aa|up_6|CP022985.1_4804454_4805081_-,NA|531aa|up_4|CP022985.1_4807252_4808845_-,NA|146aa|down_0|CP022985.1_4813760_4814198_+,NA|101aa|down_1|CP022985.1_4814235_4814538_+,NA|111aa|down_2|CP022985.1_4814537_4814870_+,NA|784aa|down_4|CP022985.1_4817206_4819558_+,NA|95aa|down_5|CP022985.1_4819554_4819839_-,NA|270aa|down_8|CP022985.1_4821469_4822279_-	NA|73aa|up_9|CP022985.1_4803407_4803626_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|74aa|up_8|CP022985.1_4803648_4803870_-	pfam01381, HTH_3, Helix-turn-helix	NA|68aa|up_7|CP022985.1_4804037_4804241_+	NA	NA|209aa|up_6|CP022985.1_4804454_4805081_-	NA	NA|449aa|up_5|CP022985.1_4805083_4806430_-	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|531aa|up_4|CP022985.1_4807252_4808845_-	NA	NA|136aa|up_3|CP022985.1_4809461_4809869_-	TIGR02512, Periplasmic_hydrogenase_large_subunit, [FeFe] hydrogenase, group A	NA|354aa|up_2|CP022985.1_4809882_4810944_+	cd07080, ALDH_Acyl-CoA-Red_LuxC, Acyl-CoA reductase LuxC	NA|355aa|up_1|CP022985.1_4811017_4812082_+	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|317aa|up_0|CP022985.1_4812266_4813217_+	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains	NA|146aa|down_0|CP022985.1_4813760_4814198_+	NA	NA|101aa|down_1|CP022985.1_4814235_4814538_+	NA	NA|111aa|down_2|CP022985.1_4814537_4814870_+	NA	NA|743aa|down_3|CP022985.1_4814953_4817182_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|784aa|down_4|CP022985.1_4817206_4819558_+	NA	NA|95aa|down_5|CP022985.1_4819554_4819839_-	NA	NA|196aa|down_6|CP022985.1_4819895_4820483_-	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|222aa|down_7|CP022985.1_4820726_4821392_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|270aa|down_8|CP022985.1_4821469_4822279_-	NA	NA|382aa|down_9|CP022985.1_4822382_4823528_-	pfam03929, PepSY_TM, PepSY-associated TM region
