The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031729	Stenotrophomonas rhizophila strain GA1 chromosome, complete genome	5929188	1316895	1424180	5929188	plate,tRNA,holin,transposase,bacteriocin,tail,lysis,protease	uncultured_Caudovirales_phage(29.41%)	100	NA	NA
AXQ47071.1|1316895_1317849_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AXQ47072.1|1318290_1319937_+	Na+/H+ antiporter	NA	NA	NA	NA	NA
AXQ47073.1|1320060_1321257_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA	NA
AXQ47074.1|1321287_1323990_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
AXQ47075.1|1324025_1324808_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AXQ47076.1|1325155_1325893_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AXQ47077.1|1326077_1326941_+	elongation factor Ts	NA	NA	NA	NA	NA
AXQ47078.1|1327121_1327865_+	UMP kinase	NA	NA	NA	NA	NA
AXQ47079.1|1327861_1328419_+	ribosome recycling factor	NA	NA	NA	NA	NA
AXQ47080.1|1328434_1329190_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	38.8	7.6e-19
AXQ47081.1|1329189_1330005_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AXQ47082.1|1330001_1331192_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AXQ47083.1|1331240_1332593_+|protease	sigma E protease regulator RseP	protease	NA	NA	NA	NA
AXQ47084.1|1332667_1335016_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AXQ47085.1|1335060_1335564_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
AXQ47086.1|1335565_1336621_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AXQ47087.1|1336733_1337174_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AXQ47088.1|1337170_1337947_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AXQ47089.1|1337948_1339076_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AXQ47090.1|1339077_1339701_+	ribonuclease HII	NA	R4THQ2	Phaeocystis_globosa_virus	33.0	1.0e-16
AXQ47091.1|1339883_1343408_+	DNA polymerase III subunit alpha	NA	R4TMT6	Streptomyces_phage	36.4	2.0e-194
AXQ47092.1|1343513_1344461_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
AXQ47093.1|1346153_1347782_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	53.1	1.2e-157
AXQ47094.1|1347982_1349272_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	59.4	7.4e-139
AXQ47095.1|1349441_1349723_+	cell division protein FtsB	NA	NA	NA	NA	NA
AXQ47096.1|1350551_1351448_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXQ47097.1|1351556_1352669_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	29.5	8.0e-33
AXQ47098.1|1352677_1353532_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
AXQ47099.1|1353708_1354182_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
AXQ47100.1|1354178_1355237_+|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
AXQ47101.1|1355224_1355974_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.0	6.3e-66
AXQ47102.1|1355970_1356654_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	50.6	6.4e-41
AXQ47103.1|1356814_1357678_+	LysM peptidoglycan-binding domain-containing protein	NA	I3PV79	Clostridium_phage	36.8	2.9e-14
AXQ47104.1|1357787_1358795_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	35.8	5.0e-34
AXQ47105.1|1359405_1359729_-	ferredoxin family protein	NA	NA	NA	NA	NA
AXQ47106.1|1359869_1362443_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	23.5	4.7e-28
AXQ47107.1|1362604_1363672_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ50482.1|1363707_1364454_+	helix-turn-helix transcriptional regulator	NA	B5TK58	Pseudomonas_phage	84.3	1.4e-118
AXQ47108.1|1364933_1365272_+|holin	pyocin R2, holin	holin	B5TK61	Pseudomonas_phage	78.6	6.0e-40
AXQ47109.1|1365283_1365781_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ47110.1|1365777_1366338_+|plate	phage baseplate assembly protein V	plate	A0A2H4JG06	uncultured_Caudovirales_phage	62.2	2.4e-49
AXQ47111.1|1366410_1366737_+|plate	phage baseplate protein	plate	A0A2H4JA09	uncultured_Caudovirales_phage	69.2	7.8e-37
AXQ47112.1|1366733_1367615_+|plate	baseplate assembly protein	plate	A0A2H4JFK9	uncultured_Caudovirales_phage	68.6	3.3e-106
AXQ47113.1|1368216_1370169_+|tail	phage tail protein	tail	A0A077K818	Ralstonia_phage	56.1	1.2e-76
AXQ47114.1|1370627_1371191_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ47115.1|1371293_1372460_+|tail	phage tail sheath family protein	tail	A0A2H4J869	uncultured_Caudovirales_phage	82.6	5.8e-183
AXQ47116.1|1372473_1372983_+|tail	phage major tail tube protein	tail	A0A2H4JBU0	uncultured_Caudovirales_phage	69.5	1.2e-63
AXQ47117.1|1372993_1373296_+|tail	phage tail assembly protein	tail	A0A2H4J873	uncultured_Caudovirales_phage	60.2	5.0e-22
AXQ47118.1|1373421_1375548_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ47119.1|1375557_1376403_+|tail	phage tail protein	tail	A0A2H4J875	uncultured_Caudovirales_phage	51.8	2.8e-78
AXQ47120.1|1376377_1376584_+|tail	phage tail protein	tail	A0A2H4J9Z9	uncultured_Caudovirales_phage	64.2	3.9e-18
AXQ47121.1|1376588_1377623_+	late control protein	NA	A0A2H4JBF6	uncultured_Caudovirales_phage	70.5	3.2e-132
AXQ47122.1|1377650_1378199_+	glycoside hydrolase family 19 protein	NA	B5TK83	Pseudomonas_phage	70.2	1.9e-72
AXQ50483.1|1378234_1378678_+|lysis	lysis protein	lysis	B5TK84	Pseudomonas_phage	56.6	5.1e-31
AXQ47123.1|1378674_1378917_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ47124.1|1379244_1379727_+	nicotinamide-nucleotide amidohydrolase family protein	NA	B5TK85	Pseudomonas_phage	74.8	6.5e-56
AXQ47125.1|1379830_1380898_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	62.0	1.4e-111
AXQ47126.1|1380909_1381380_+	recombination regulator RecX	NA	NA	NA	NA	NA
AXQ47127.1|1381443_1382562_-	LOG family protein	NA	NA	NA	NA	NA
AXQ47128.1|1382854_1383058_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ47129.1|1383058_1383478_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ47130.1|1383703_1384414_+	DTW domain-containing protein	NA	NA	NA	NA	NA
AXQ47131.1|1384593_1385244_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXQ47132.1|1385317_1385683_+	diacylglycerol kinase	NA	NA	NA	NA	NA
AXQ47133.1|1385679_1386606_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXQ47134.1|1386724_1387504_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AXQ47135.1|1387574_1388270_-|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
AXQ47136.1|1388276_1388738_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	50.0	1.1e-36
AXQ47137.1|1388786_1389497_-	RNA-binding protein	NA	NA	NA	NA	NA
AXQ47138.1|1389616_1390072_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXQ50484.1|1390280_1390874_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ47139.1|1391056_1391902_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ47140.1|1392373_1392580_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ47141.1|1392741_1393485_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ47142.1|1393539_1394289_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ47143.1|1394360_1395692_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AXQ47144.1|1395925_1397836_+	potassium transporter Kup	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	33.6	1.5e-74
AXQ47145.1|1397949_1399242_-	virulence factor family protein	NA	NA	NA	NA	NA
AXQ47146.1|1399241_1401884_-	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA	NA
AXQ47147.1|1404873_1406589_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
AXQ47148.1|1406748_1408032_-	outer membrane porin, OprD family	NA	NA	NA	NA	NA
AXQ47149.1|1408773_1409193_+	HIT domain-containing protein	NA	NA	NA	NA	NA
AXQ47150.1|1409194_1409401_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ47151.1|1409440_1410034_-	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	48.3	3.0e-10
AXQ47152.1|1410311_1410785_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	37.1	1.1e-18
AXQ47153.1|1410934_1411261_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AXQ47154.1|1411353_1411575_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AXQ47155.1|1411669_1413445_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	26.3	1.3e-11
AXQ47156.1|1413554_1414301_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AXQ47157.1|1414469_1414994_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AXQ47158.1|1415102_1415720_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AXQ47159.1|1415716_1416763_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	27.4	1.3e-05
AXQ47160.1|1417341_1418037_+	protein TolQ	NA	NA	NA	NA	NA
AXQ47161.1|1418051_1418504_+	protein TolR	NA	NA	NA	NA	NA
AXQ47162.1|1418503_1419580_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AXQ47163.1|1420932_1421430_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AXQ47164.1|1421436_1422252_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AXQ50485.1|1422408_1423056_+	7-carboxy-7-deazaguanine synthase QueE	NA	NA	NA	NA	NA
AXQ47165.1|1423072_1423747_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	36.2	1.2e-26
AXQ47166.1|1423991_1424180_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 2
CP031729	Stenotrophomonas rhizophila strain GA1 chromosome, complete genome	5929188	2854597	2894829	5929188	holin,transposase	Klosneuvirus(12.5%)	27	NA	NA
AXQ48156.1|2854597_2856193_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	31.9	5.0e-60
AXQ48157.1|2856506_2857802_+	MFS transporter	NA	NA	NA	NA	NA
AXQ48158.1|2859015_2859999_-|transposase	IS5 family transposase	transposase	A0A077SK28	Escherichia_phage	58.2	1.4e-100
AXQ48159.1|2860106_2860529_-	low affinity iron permease family protein	NA	A0A1C9EHA1	Mycobacterium_phage	38.2	4.6e-05
AXQ48160.1|2860689_2862033_+	sodium:proton antiporter	NA	NA	NA	NA	NA
AXQ48161.1|2862212_2862536_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AXQ48162.1|2862929_2864465_+|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	50.3	7.0e-120
AXQ48163.1|2864741_2865845_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AXQ50533.1|2866082_2867453_+	PAS domain S-box protein	NA	NA	NA	NA	NA
AXQ48164.1|2867617_2868766_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
AXQ48165.1|2869028_2869841_+	N-acyl homoserine lactonase family protein	NA	NA	NA	NA	NA
AXQ48166.1|2869968_2870163_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ48167.1|2871451_2872042_-	DUF488 domain-containing protein	NA	A0A2K9L455	Tupanvirus	40.3	1.1e-28
AXQ48168.1|2872140_2872353_-	DUF2945 domain-containing protein	NA	NA	NA	NA	NA
AXQ48169.1|2872525_2872801_+	DNA-binding transcriptional repressor FrmR	NA	NA	NA	NA	NA
AXQ48170.1|2874011_2874410_+	VOC family protein	NA	NA	NA	NA	NA
AXQ48171.1|2876650_2878516_+	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	37.6	2.6e-52
AXQ48172.1|2878541_2881193_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	33.6	7.5e-154
AXQ48173.1|2884008_2884899_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXQ48174.1|2885008_2885980_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
AXQ48175.1|2886035_2887019_-	LLM class oxidoreductase	NA	NA	NA	NA	NA
AXQ48176.1|2887482_2888496_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXQ48177.1|2888559_2888862_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AXQ48178.1|2889476_2889674_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ48179.1|2889849_2890746_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXQ48180.1|2891766_2892928_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	54.6	1.7e-86
AXQ50534.1|2893392_2894829_-|transposase	IS1182 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP031729	Stenotrophomonas rhizophila strain GA1 chromosome, complete genome	5929188	3100530	3107921	5929188		Staphylococcus_phage(16.67%)	9	NA	NA
AXQ48327.1|3100530_3101358_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	43.8	8.6e-64
AXQ48328.1|3101499_3101706_-	hypothetical protein	NA	A0A2H4JGS3	uncultured_Caudovirales_phage	43.9	2.2e-05
AXQ48329.1|3101699_3102974_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	48.1	1.8e-108
AXQ50544.1|3102963_3103392_-	peptidase S24	NA	A0A1L5C2A3	Pseudoalteromonas_phage	42.0	5.1e-12
AXQ48330.1|3103493_3104213_+	hypothetical protein	NA	Q5QF62	Pseudomonas_virus	48.9	2.3e-57
AXQ48331.1|3104241_3104562_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ48332.1|3105026_3105209_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA	NA
AXQ48333.1|3105198_3105810_+	YitT family protein	NA	NA	NA	NA	NA
AXQ48334.1|3106334_3107921_+	ABC-F family ATPase	NA	A0A2K9L0W2	Tupanvirus	27.9	1.9e-59
>prophage 4
CP031729	Stenotrophomonas rhizophila strain GA1 chromosome, complete genome	5929188	3679269	3737792	5929188	holin,protease,tRNA,transposase	uncultured_Caudovirales_phage(35.0%)	46	NA	NA
AXQ48740.1|3679269_3679695_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AXQ48741.1|3679694_3680288_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ48742.1|3680776_3681469_+	DUF421 domain-containing protein	NA	NA	NA	NA	NA
AXQ48743.1|3682278_3682839_-	GTP cyclohydrolase I FolE	NA	A0A0P0HSD2	Acinetobacter_phage	60.9	6.4e-55
AXQ50578.1|3684872_3685490_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ50579.1|3687583_3688453_+	transketolase	NA	A0A0P0YMZ3	Yellowstone_lake_phycodnavirus	37.6	9.1e-08
AXQ48744.1|3688449_3689451_+	transketolase family protein	NA	A0A0P0YNE1	Yellowstone_lake_phycodnavirus	28.7	2.8e-08
AXQ48745.1|3689579_3690881_+	MFS transporter	NA	NA	NA	NA	NA
AXQ48746.1|3691052_3691310_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ48747.1|3691321_3693352_+	pyrroloquinoline quinone-dependent dehydrogenase	NA	NA	NA	NA	NA
AXQ48748.1|3693410_3694163_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AXQ50580.1|3694205_3694838_+	glutaredoxin 2	NA	NA	NA	NA	NA
AXQ48749.1|3694849_3695143_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AXQ48750.1|3695117_3696280_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	54.6	1.7e-86
AXQ48751.1|3696318_3696507_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXQ48752.1|3696704_3697560_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	40.5	1.1e-18
AXQ48753.1|3699250_3699922_+	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	91.5	3.1e-104
AXQ48754.1|3700118_3701498_+	uracil-xanthine permease	NA	H9YQ34	environmental_Halophage	51.1	7.4e-28
AXQ48755.1|3701585_3701978_+	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	79.1	7.2e-53
AXQ48756.1|3701979_3702339_+	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	65.0	5.0e-37
AXQ48757.1|3702338_3702635_+	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	61.6	6.2e-25
AXQ48758.1|3702631_3702967_+	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	74.8	1.4e-41
AXQ48759.1|3702963_3703968_+	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	79.2	2.3e-151
AXQ48760.1|3704061_3705021_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
AXQ48761.1|3705139_3706531_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
AXQ48762.1|3706531_3707812_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.3	2.5e-94
AXQ48763.1|3707842_3708217_-	fluoride efflux transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	45.8	1.2e-09
AXQ48764.1|3709550_3710174_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
AXQ48765.1|3713129_3713810_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
AXQ48766.1|3713866_3714574_+	arginyltransferase	NA	NA	NA	NA	NA
AXQ48767.1|3714674_3714893_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AXQ48768.1|3715075_3717346_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	43.0	1.3e-165
AXQ48769.1|3717376_3717739_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.2	8.2e-11
AXQ48770.1|3717969_3718224_+	cold shock domain-containing protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.5	5.5e-14
AXQ48771.1|3718292_3719549_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	77.8	1.7e-15
AXQ48772.1|3719976_3722202_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
AXQ48773.1|3722904_3724029_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
AXQ48774.1|3724025_3724652_+	lysogenization regulator HflD	NA	NA	NA	NA	NA
AXQ48775.1|3724840_3726211_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	3.4e-110
AXQ48776.1|3726292_3727459_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AXQ48777.1|3727451_3727880_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXQ48778.1|3731224_3732334_-	agmatine deiminase	NA	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	44.5	2.9e-83
AXQ50581.1|3733281_3733506_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ48779.1|3733549_3734839_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AXQ48780.1|3734831_3735383_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXQ48781.1|3736838_3737792_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP031729	Stenotrophomonas rhizophila strain GA1 chromosome, complete genome	5929188	3915762	3950748	5929188	tail,tRNA,integrase,capsid	Pseudomonas_phage(46.34%)	49	3910169:3910183	3958774:3958788
3910169:3910183	attL	GCCAGGTACTGGCCG	NA	NA	NA	NA
AXQ48894.1|3915762_3916224_-	hypothetical protein	NA	W6MVK9	Pseudomonas_phage	63.3	3.0e-42
AXQ48895.1|3916223_3916688_-	hypothetical protein	NA	W6MW30	Pseudomonas_phage	58.8	1.1e-44
AXQ48896.1|3918988_3919624_-	hypothetical protein	NA	W6MVD9	Pseudomonas_phage	53.6	1.6e-54
AXQ48897.1|3919683_3920025_-	hypothetical protein	NA	A0A2H4J6K8	uncultured_Caudovirales_phage	53.0	7.7e-11
AXQ48898.1|3920017_3920410_-	hypothetical protein	NA	T1SA71	Salmonella_phage	69.8	1.0e-43
AXQ48899.1|3920420_3921416_-|capsid	phage capsid protein	capsid	T1S9H9	Salmonella_phage	63.7	6.8e-124
AXQ48900.1|3922048_3922363_-	hypothetical protein	NA	W6MVD5	Pseudomonas_phage	67.1	1.2e-21
AXQ48901.1|3922363_3924052_-|tail	phage tail protein	tail	W6MYA0	Pseudomonas_phage	84.5	2.7e-282
AXQ48902.1|3924054_3924318_-	hypothetical protein	NA	W6MVK3	Pseudomonas_phage	57.0	3.1e-12
AXQ48903.1|3924329_3925760_-	DNA packaging protein	NA	Q2A0C1	Sodalis_phage	56.2	3.2e-151
AXQ48904.1|3925746_3926376_-	hypothetical protein	NA	G8C7P2	Escherichia_phage	54.8	1.0e-45
AXQ48905.1|3926379_3926625_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ48906.1|3927069_3927582_-	lysozyme	NA	I6NW41	Burkholderia_virus	62.1	9.0e-56
AXQ48907.1|3927568_3927862_-	Holin	NA	L7TP52	Pseudomonas_virus	43.8	2.1e-12
AXQ48908.1|3928012_3929434_-	group II intron reverse transcriptase/maturase	NA	H7BVN7	unidentified_phage	26.9	1.4e-18
AXQ48909.1|3929949_3930318_-	hypothetical protein	NA	W6MVN8	Pseudomonas_phage	38.1	1.5e-15
AXQ48910.1|3930472_3931075_-	ninG protein	NA	L7TH85	Pseudomonas_virus	56.9	4.3e-57
AXQ48911.1|3931065_3931389_-	hypothetical protein	NA	A0A2H4J249	uncultured_Caudovirales_phage	44.1	1.5e-16
AXQ48912.1|3931388_3931787_-	NinB family protein	NA	A0A059VG13	Pseudomonas_phage	74.2	1.7e-54
AXQ48913.1|3931779_3932094_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ48914.1|3932194_3932956_-	Replication protein P	NA	A0A2D1GNB3	Pseudomonas_phage	63.1	1.0e-71
AXQ48915.1|3932952_3933729_-	hypothetical protein	NA	A0A2D1GNQ6	Pseudomonas_phage	52.5	6.0e-27
AXQ48916.1|3933725_3934031_-	hypothetical protein	NA	A0A0S2SY28	Pseudomonas_phage	64.1	7.3e-29
AXQ48917.1|3934027_3934819_-	KilA-N domain-containing protein	NA	A5LH75	Enterobacteria_phage	59.6	1.4e-26
AXQ48918.1|3934906_3935119_-	hypothetical protein	NA	A0A2H4J8V2	uncultured_Caudovirales_phage	67.6	6.9e-18
AXQ48919.1|3935138_3935342_-	hypothetical protein	NA	A0A2H4J528	uncultured_Caudovirales_phage	94.0	3.5e-27
AXQ48920.1|3935374_3935620_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ48921.1|3935735_3936473_+	helix-turn-helix transcriptional regulator	NA	W6MVG5	Pseudomonas_phage	59.6	1.4e-49
AXQ48922.1|3936972_3937539_+	hypothetical protein	NA	J7I0S5	Pseudomonas_phage	55.5	2.2e-58
AXQ48923.1|3937565_3937748_+	hypothetical protein	NA	A0A0U4KL27	Pseudomonas_phage	84.7	7.7e-10
AXQ48924.1|3938135_3938768_+	hypothetical protein	NA	A0A2I7RA27	Vibrio_phage	38.8	4.4e-36
AXQ48925.1|3938926_3939181_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ48926.1|3939177_3939408_+	hypothetical protein	NA	K4PAA5	Pseudomonas_phage	48.7	7.2e-13
AXQ48927.1|3939404_3939599_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ48928.1|3939872_3940499_+	ATP-binding protein	NA	A0A059VF62	Pseudomonas_phage	76.5	5.4e-87
AXQ48929.1|3941203_3941392_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ48930.1|3941473_3941839_+	hypothetical protein	NA	A0A2H4J0L9	uncultured_Caudovirales_phage	89.3	4.5e-57
AXQ48931.1|3941813_3942179_+	hypothetical protein	NA	A0A2H4JAQ1	uncultured_Caudovirales_phage	46.9	4.7e-14
AXQ48932.1|3942262_3943255_+	site-specific DNA-methyltransferase	NA	A0A1B0VM49	Pseudomonas_phage	62.7	5.4e-121
AXQ48933.1|3943829_3944090_+	hypothetical protein	NA	A0A2I7RN95	Vibrio_phage	39.4	5.5e-09
AXQ48934.1|3944139_3944505_+	HNH endonuclease	NA	Q3HQV7	Burkholderia_phage	45.1	8.2e-27
AXQ48935.1|3944501_3944753_+	hypothetical protein	NA	A0A2H4J399	uncultured_Caudovirales_phage	96.4	2.0e-40
AXQ48936.1|3944749_3945085_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ48937.1|3945081_3945477_+	DUF2591 domain-containing protein	NA	A0A1B0VMD7	Pseudomonas_phage	40.1	2.7e-15
AXQ48938.1|3946211_3946949_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	81.2	1.2e-120
AXQ48939.1|3947150_3947432_+	Pyocin activator protein PrtN	NA	A0A2K8HN48	Pseudomonas_phage	78.7	1.3e-32
AXQ48940.1|3947400_3948543_-|integrase	site-specific integrase	integrase	L7TP61	Pseudomonas_virus	75.5	4.4e-167
AXQ48941.1|3948749_3949652_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AXQ48942.1|3949821_3950748_+	transaldolase	NA	A0A1D7SEQ4	Cyanophage	30.4	1.0e-12
3958774:3958788	attR	CGGCCAGTACCTGGC	NA	NA	NA	NA
>prophage 6
CP031729	Stenotrophomonas rhizophila strain GA1 chromosome, complete genome	5929188	4331587	4337061	5929188		Pseudomonas_phage(66.67%)	7	NA	NA
AXQ49219.1|4331587_4331872_-	hypothetical protein	NA	H2BDA1	Pseudomonas_phage	69.3	3.1e-21
AXQ49220.1|4331868_4332231_-	hypothetical protein	NA	J7HXL1	Pseudomonas_phage	50.0	3.1e-18
AXQ49221.1|4332227_4332671_-	structural protein P5	NA	A0A2H4J6R1	uncultured_Caudovirales_phage	53.7	9.0e-36
AXQ50603.1|4332729_4332876_-	hypothetical protein	NA	A0A2H4J9Z7	uncultured_Caudovirales_phage	70.8	2.0e-13
AXQ49222.1|4332999_4333362_-	hypothetical protein	NA	A0A0S3UFS0	Pseudomonas_phage	57.0	7.4e-20
AXQ49223.1|4334453_4335131_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ49224.1|4335450_4337061_-	DUF1983 domain-containing protein	NA	A0A1B0VMH5	Pseudomonas_phage	33.0	1.6e-45
>prophage 7
CP031729	Stenotrophomonas rhizophila strain GA1 chromosome, complete genome	5929188	4348541	4361356	5929188	integrase	Pseudomonas_phage(50.0%)	20	4346350:4346364	4368677:4368691
4346350:4346364	attL	GGATACCCAGGCCGA	NA	NA	NA	NA
AXQ49236.1|4348541_4349951_-	replicative DNA helicase	NA	A0A1W6JTB3	Pseudomonas_phage	49.9	9.3e-119
AXQ49237.1|4349947_4350721_-	AAA family ATPase	NA	A0A0A0YRV1	Pseudomonas_phage	50.4	3.5e-67
AXQ49238.1|4350717_4351506_-	hypothetical protein	NA	A0A2H4J580	uncultured_Caudovirales_phage	52.3	2.1e-27
AXQ49239.1|4351502_4351733_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ49240.1|4351729_4352332_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ49241.1|4352328_4353072_-	phage antirepressor	NA	A0A191ZDI8	Acinetobacter_phage	53.5	2.6e-19
AXQ49242.1|4353068_4353353_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ49243.1|4353349_4353619_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ49244.1|4353615_4353948_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ49245.1|4354152_4354776_-	DNA-binding protein	NA	H6WRZ8	Salmonella_phage	56.3	3.7e-51
AXQ50607.1|4354772_4355069_-	helix-turn-helix domain-containing protein	NA	A0A125RNS7	Pseudomonas_phage	50.0	7.9e-12
AXQ49246.1|4355043_4355901_+	helix-turn-helix transcriptional regulator	NA	W6MVG5	Pseudomonas_phage	38.8	1.6e-41
AXQ49247.1|4356045_4356444_+	LuxR family transcriptional regulator	NA	A0A1W6JTA9	Pseudomonas_phage	63.9	2.1e-31
AXQ49248.1|4356481_4356742_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ49249.1|4356849_4357365_+	Rha protein	NA	A0A2D1GLJ3	Escherichia_phage	37.0	8.3e-25
AXQ49250.1|4357463_4357859_+	carbon storage regulator	NA	NA	NA	NA	NA
AXQ49251.1|4357995_4358727_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ49252.1|4358884_4359205_+	hypothetical protein	NA	H2BDI8	Pseudomonas_virus	55.6	7.2e-19
AXQ49253.1|4359201_4359978_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	57.9	4.5e-75
AXQ49254.1|4360165_4361356_+|integrase	site-specific integrase	integrase	A0A1B0Z061	Pseudomonas_phage	56.1	3.1e-115
4368677:4368691	attR	GGATACCCAGGCCGA	NA	NA	NA	NA
>prophage 8
CP031729	Stenotrophomonas rhizophila strain GA1 chromosome, complete genome	5929188	5506429	5574305	5929188	plate,head,capsid,portal,terminase,holin,tail,integrase	uncultured_Caudovirales_phage(54.84%)	68	5540049:5540095	5574415:5574461
AXQ50114.1|5506429_5507374_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
AXQ50115.1|5509519_5509990_+	thioesterase	NA	NA	NA	NA	NA
AXQ50116.1|5510259_5510517_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ50117.1|5510637_5511744_-	GlxA family transcriptional regulator	NA	NA	NA	NA	NA
AXQ50118.1|5514029_5514977_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
AXQ50119.1|5515059_5515905_+|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
AXQ50120.1|5518743_5519004_-	DUF2164 domain-containing protein	NA	NA	NA	NA	NA
AXQ50121.1|5519004_5519643_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA	NA
AXQ50642.1|5519643_5520237_-	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA	NA
AXQ50643.1|5520476_5522111_-	MFS transporter	NA	NA	NA	NA	NA
AXQ50122.1|5522601_5524839_+	AsmA family protein	NA	NA	NA	NA	NA
AXQ50123.1|5524835_5525903_+	adenine DNA glycosylase	NA	NA	NA	NA	NA
AXQ50124.1|5525899_5526172_+	oxidative damage protection protein	NA	NA	NA	NA	NA
AXQ50125.1|5528717_5529161_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ50126.1|5529167_5529431_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ50127.1|5529353_5530775_-	group II intron reverse transcriptase/maturase	NA	H7BVN7	unidentified_phage	26.9	1.4e-18
AXQ50128.1|5530801_5531098_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ50129.1|5531260_5532646_-	GABA permease	NA	NA	NA	NA	NA
AXQ50130.1|5533278_5534052_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	32.4	3.8e-21
AXQ50131.1|5534063_5534816_+	amino acid ABC transporter	NA	NA	NA	NA	NA
AXQ50132.1|5534869_5535562_+	ABC transporter permease	NA	NA	NA	NA	NA
AXQ50133.1|5535561_5536251_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXQ50134.1|5536388_5537594_+	methyltransferase	NA	NA	NA	NA	NA
AXQ50135.1|5537993_5538569_+	DUF2975 domain-containing protein	NA	NA	NA	NA	NA
AXQ50136.1|5539381_5539588_+	transcriptional regulator	NA	NA	NA	NA	NA
AXQ50137.1|5539650_5539920_+	hypothetical protein	NA	NA	NA	NA	NA
5540049:5540095	attL	CTTGTAATCAGTAGGTCCCGGGTTCGATTCCTGGTGCCGGCACCATA	NA	NA	NA	NA
AXQ50138.1|5541382_5542144_-	DNA adenine methylase	NA	A2I2Y7	Vibrio_virus	69.8	4.4e-107
AXQ50139.1|5542301_5543357_-|portal	phage portal protein	portal	A0A2H4J922	uncultured_Caudovirales_phage	79.9	4.6e-155
AXQ50140.1|5543356_5545111_-|terminase	terminase	terminase	Q9ZXM5	Pseudomonas_virus	81.7	6.5e-287
AXQ50644.1|5545215_5546124_+|capsid	phage capsid protein	capsid	A0A2H4J928	uncultured_Caudovirales_phage	61.1	1.3e-84
AXQ50141.1|5547166_5547979_+|terminase	terminase	terminase	A0A2H4J948	uncultured_Caudovirales_phage	62.4	2.1e-70
AXQ50142.1|5547984_5548449_+|head	head completion/stabilization protein	head	A0A2H4JCS4	uncultured_Caudovirales_phage	56.4	8.2e-40
AXQ50143.1|5548678_5549032_+	hypothetical protein	NA	Q9ZXL8	Pseudomonas_virus	55.6	1.5e-25
AXQ50144.1|5549033_5549312_+|holin	phage holin family protein	holin	Q9ZXL7	Pseudomonas_virus	71.8	1.2e-25
AXQ50145.1|5550145_5550424_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ50146.1|5550420_5550906_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ50147.1|5550953_5551172_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ50148.1|5551191_5551458_+	hypothetical protein	NA	Q9ZXL4	Pseudomonas_virus	53.2	1.3e-13
AXQ50149.1|5551454_5551865_+|tail	phage tail protein	tail	A0A2H4J906	uncultured_Caudovirales_phage	68.9	6.1e-47
AXQ50150.1|5551861_5552314_+	phage virion morphogenesis protein	NA	A0A2H4J927	uncultured_Caudovirales_phage	73.7	2.8e-53
AXQ50151.1|5552388_5552970_+|plate	phage baseplate assembly protein V	plate	Q9ZXL0	Pseudomonas_virus	61.8	2.3e-47
AXQ50152.1|5552966_5553317_+|plate	baseplate assembly protein	plate	A0A2H4JE52	uncultured_Caudovirales_phage	62.8	1.9e-33
AXQ50153.1|5554225_5554837_+|tail	phage tail protein I	tail	A0A2H4JAU2	uncultured_Caudovirales_phage	67.2	4.7e-75
AXQ50154.1|5554829_5556779_+|tail	phage tail protein	tail	A0A077K818	Ralstonia_phage	55.6	1.5e-87
AXQ50155.1|5557343_5558534_+|tail	phage tail protein	tail	A0A2H4JCP8	uncultured_Caudovirales_phage	81.2	4.4e-186
AXQ50156.1|5558581_5559097_+|tail	phage major tail tube protein	tail	A0A2H4J916	uncultured_Caudovirales_phage	73.7	3.2e-69
AXQ50157.1|5559124_5559469_+|tail	phage tail assembly protein	tail	E5E3Q1	Burkholderia_phage	61.8	7.5e-22
AXQ50158.1|5559477_5559600_+|tail	GpE family phage tail protein	tail	A0A2H4JFK5	uncultured_Caudovirales_phage	66.7	2.0e-09
AXQ50645.1|5559607_5561875_+|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	43.4	1.2e-147
AXQ50159.1|5562749_5563202_+	oxidoreductase	NA	A0A2H4JG54	uncultured_Caudovirales_phage	67.1	1.4e-52
AXQ50160.1|5564484_5564673_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ50161.1|5564788_5565238_-	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
AXQ50162.1|5565275_5565707_-	XRE family transcriptional regulator	NA	Q6QID2	Burkholderia_phage	42.7	2.9e-07
AXQ50163.1|5565701_5565902_+	DNA-binding protein	NA	A0A2H4JE67	uncultured_Caudovirales_phage	54.4	5.0e-10
AXQ50164.1|5565931_5566417_+	hypothetical protein	NA	Q9ZXJ2	Pseudomonas_virus	62.1	2.9e-48
AXQ50165.1|5566480_5566798_+	transcriptional regulator	NA	A0A2H4JAW0	uncultured_Caudovirales_phage	61.0	3.6e-31
AXQ50166.1|5566794_5567169_+	hypothetical protein	NA	A0A2H4J947	uncultured_Caudovirales_phage	34.8	7.1e-10
AXQ50167.1|5567239_5567485_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ50168.1|5567499_5570211_+	DUF927 domain-containing protein	NA	A0A2H4J936	uncultured_Caudovirales_phage	50.7	3.3e-266
AXQ50169.1|5570444_5570798_+	hypothetical protein	NA	A0A0U4JP55	Pseudomonas_phage	52.0	4.1e-23
AXQ50170.1|5570794_5571010_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ50171.1|5571170_5571530_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ50172.1|5571589_5572042_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ50173.1|5572038_5572452_+	DUF2528 family protein	NA	NA	NA	NA	NA
AXQ50174.1|5572448_5572652_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ50175.1|5572641_5572881_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ50176.1|5572950_5573166_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ50177.1|5573162_5574305_+|integrase	integrase	integrase	V9IQN0	Stenotrophomonas_phage	40.4	1.0e-70
5574415:5574461	attR	CTTGTAATCAGTAGGTCCCGGGTTCGATTCCTGGTGCCGGCACCATA	NA	NA	NA	NA
>prophage 9
CP031729	Stenotrophomonas rhizophila strain GA1 chromosome, complete genome	5929188	5861756	5910781	5929188	protease,transposase	uncultured_Caudovirales_phage(57.14%)	38	NA	NA
AXQ50399.1|5861756_5863103_-|transposase	transposase	transposase	NA	NA	NA	NA
AXQ50400.1|5863099_5865112_-|transposase	transposase	transposase	NA	NA	NA	NA
AXQ50401.1|5865108_5866068_-|transposase	transposase	transposase	NA	NA	NA	NA
AXQ50402.1|5866746_5868342_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ50403.1|5868611_5868878_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AXQ50404.1|5870726_5871221_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXQ50405.1|5871367_5871754_+	ArsR family transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	66.4	1.3e-38
AXQ50406.1|5871783_5873067_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4J144	uncultured_Caudovirales_phage	85.0	8.8e-201
AXQ50407.1|5873574_5874288_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	89.9	4.7e-119
AXQ50408.1|5874292_5874796_+	protein phosphatase	NA	NA	NA	NA	NA
AXQ50409.1|5875895_5876474_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	64.4	2.9e-58
AXQ50410.1|5876653_5877439_+	cation transporter	NA	NA	NA	NA	NA
AXQ50658.1|5877539_5878004_+|protease	ATP-dependent zinc protease	protease	NA	NA	NA	NA
AXQ50411.1|5877957_5878569_+	DUF4946 domain-containing protein	NA	NA	NA	NA	NA
AXQ50659.1|5879378_5881658_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	46.3	8.5e-146
AXQ50412.1|5881863_5882259_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AXQ50413.1|5882748_5883585_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ50414.1|5884098_5884431_-	four-helix bundle copper-binding protein	NA	NA	NA	NA	NA
AXQ50415.1|5884585_5884939_-	heat-shock protein HtpX	NA	NA	NA	NA	NA
AXQ50416.1|5888089_5889550_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AXQ50660.1|5889546_5890797_-	TolC family protein	NA	NA	NA	NA	NA
AXQ50417.1|5890849_5891230_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ50418.1|5891266_5892667_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	25.6	2.4e-10
AXQ50419.1|5893508_5893715_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ50420.1|5893896_5895690_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AXQ50421.1|5895704_5896028_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ50422.1|5896017_5897118_+	copper resistance protein B	NA	NA	NA	NA	NA
AXQ50423.1|5897128_5897911_+	cytochrome c	NA	NA	NA	NA	NA
AXQ50424.1|5897900_5898356_+	DUF411 domain-containing protein	NA	NA	NA	NA	NA
AXQ50425.1|5898460_5898649_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
AXQ50426.1|5898786_5899119_-	DUF2790 domain-containing protein	NA	NA	NA	NA	NA
AXQ50661.1|5899263_5899587_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AXQ50427.1|5899916_5900840_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ50428.1|5900811_5902293_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ50429.1|5903760_5905929_-|transposase	transposase	transposase	NA	NA	NA	NA
AXQ50662.1|5905921_5906773_-	endonuclease	NA	NA	NA	NA	NA
AXQ50430.1|5907093_5908929_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	43.3	3.6e-131
AXQ50431.1|5909827_5910781_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 1
CP031732	Stenotrophomonas rhizophila strain GA1 plasmid unnamed3, complete sequence	265994	5912	63714	265994	transposase	Streptococcus_phage(30.0%)	49	NA	NA
AXQ51030.1|5912_6827_+|transposase	IS1380 family transposase	transposase	NA	NA	NA	NA
AXQ51031.1|6838_7867_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	37.4	2.0e-46
AXQ51032.1|8132_9515_+|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	27.3	3.9e-29
AXQ51033.1|12792_13395_-	recombinase family protein	NA	A0A0C4UR34	Shigella_phage	50.3	1.6e-40
AXQ51034.1|13586_13964_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AXQ51035.1|13944_14280_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXQ51036.1|14294_14630_+|transposase	transposase	transposase	NA	NA	NA	NA
AXQ51037.1|14653_14980_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ51038.1|14976_15348_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ51039.1|17272_17509_+	DUF2798 domain-containing protein	NA	NA	NA	NA	NA
AXQ51040.1|17722_18397_-	haloacid dehalogenase type II	NA	NA	NA	NA	NA
AXQ51041.1|18462_19161_-	glutathione S-transferase	NA	NA	NA	NA	NA
AXQ51042.1|19262_19877_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXQ51043.1|19873_20581_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AXQ51044.1|20723_21197_-	DoxX family protein	NA	NA	NA	NA	NA
AXQ51045.1|21208_21964_-	DUF2063 domain-containing protein	NA	NA	NA	NA	NA
AXQ51046.1|21960_22794_-	DUF692 domain-containing protein	NA	NA	NA	NA	NA
AXQ51047.1|22812_23085_-	DUF2282 domain-containing protein	NA	NA	NA	NA	NA
AXQ51048.1|24080_24971_-	HD domain-containing protein	NA	NA	NA	NA	NA
AXQ51049.1|25011_26943_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	32.2	8.7e-43
AXQ51050.1|27149_27422_-	DUF2282 domain-containing protein	NA	NA	NA	NA	NA
AXQ51051.1|27637_28219_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AXQ51052.1|28205_28847_+	DUF1109 domain-containing protein	NA	NA	NA	NA	NA
AXQ51053.1|29660_29885_-	DUF2798 domain-containing protein	NA	NA	NA	NA	NA
AXQ51054.1|29938_30640_-	cysteine hydrolase	NA	NA	NA	NA	NA
AXQ51055.1|30730_31321_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AXQ51056.1|31753_32152_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AXQ51057.1|32226_32577_+	mercury transporter MerT	NA	NA	NA	NA	NA
AXQ51058.1|32589_32865_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
AXQ51059.1|32872_33085_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ51060.1|34930_35734_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	36.2	5.2e-34
AXQ51264.1|35726_37226_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	26.7	1.8e-11
AXQ51061.1|37382_38228_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXQ51062.1|38257_38776_-	DUF417 family protein	NA	NA	NA	NA	NA
AXQ51063.1|41931_42492_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	88.6	2.1e-50
AXQ51064.1|45100_46750_-	GMC family oxidoreductase	NA	NA	NA	NA	NA
AXQ51065.1|46817_47456_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXQ51066.1|47612_47849_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ51067.1|48509_49796_-	transporter	NA	NA	NA	NA	NA
AXQ51068.1|50958_52341_+|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	27.3	3.9e-29
AXQ51069.1|52823_54206_+|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	27.3	3.9e-29
AXQ51070.1|54483_56031_-|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	51.5	5.4e-128
AXQ51071.1|56092_56428_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AXQ51072.1|56424_56757_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AXQ51073.1|57021_57693_-	serine/threonine protein phosphatase	NA	NA	NA	NA	NA
AXQ51074.1|57689_58391_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ51265.1|58392_59160_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXQ51266.1|60310_61747_+|transposase	IS1182 family transposase	transposase	NA	NA	NA	NA
AXQ51075.1|63075_63714_-|transposase	transposase	transposase	NA	NA	NA	NA
