The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP023470	Salmonella enterica subsp. enterica strain BAA-1672 chromosome, complete genome	4483399	764624	773798	4483399	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AXR37310.1|764624_765572_+	ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
AXR37311.1|765555_766287_+	ABC transporter permease	NA	NA	NA	NA	NA
AXR37312.1|766267_766375_-	hypothetical protein	NA	NA	NA	NA	NA
AXR37313.1|766434_767166_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AXR37314.1|767388_769074_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	88.8	1.4e-278
AXR37315.1|769070_769790_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AXR37316.1|769836_770304_+	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AXR37317.1|770360_770891_-	hypothetical protein	NA	NA	NA	NA	NA
AXR37318.1|771062_771521_-	hypothetical protein	NA	Q9EYF5	Enterobacteria_phage	71.9	2.4e-52
AXR37319.1|771761_773798_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	2.8e-55
>prophage 2
CP023470	Salmonella enterica subsp. enterica strain BAA-1672 chromosome, complete genome	4483399	852407	860063	4483399		Enterobacteria_phage(50.0%)	8	NA	NA
AXR37383.1|852407_853493_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
AXR37384.1|853492_854392_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	4.7e-31
AXR40662.1|854439_855318_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.2	6.0e-108
AXR37385.1|855318_855870_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
AXR37386.1|855875_856850_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AXR37387.1|856865_857639_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AXR37388.1|857643_858723_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
AXR37389.1|858749_860063_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 3
CP023470	Salmonella enterica subsp. enterica strain BAA-1672 chromosome, complete genome	4483399	937384	944612	4483399		Morganella_phage(33.33%)	9	NA	NA
AXR37460.1|937384_937804_+	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
AXR37461.1|937806_939075_+	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	91.7	1.3e-225
AXR37462.1|939520_939733_+	cold-shock protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
AXR40665.1|939743_939932_+	cold-shock protein	NA	NA	NA	NA	NA
AXR37463.1|940192_941371_-	porin	NA	Q1MVN1	Enterobacteria_phage	56.4	2.3e-107
AXR37464.1|941382_941583_-	hypothetical protein	NA	NA	NA	NA	NA
AXR37465.1|942021_942333_+	hypothetical protein	NA	NA	NA	NA	NA
AXR37466.1|942412_943108_+	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.8e-07
AXR37467.1|943181_944612_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 4
CP023470	Salmonella enterica subsp. enterica strain BAA-1672 chromosome, complete genome	4483399	1635074	1643267	4483399		Escherichia_phage(42.86%)	9	NA	NA
AXR38128.1|1635074_1635314_+	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
AXR40696.1|1636187_1636997_+	cytolethal distending toxin subunit B family protein	NA	A5LH53	Enterobacteria_phage	50.4	4.2e-63
AXR38129.1|1637069_1637447_+	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
AXR38130.1|1637594_1638137_-	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
AXR38131.1|1638328_1639057_-	pertussis toxin-like subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	52.9	4.1e-62
AXR38132.1|1639073_1639487_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
AXR38133.1|1640129_1640402_+	hypothetical protein	NA	NA	NA	NA	NA
AXR38134.1|1640433_1641558_-	hypothetical protein	NA	NA	NA	NA	NA
AXR38135.1|1642016_1643267_-	isocitrate dehydrogenase (NADP(+))	NA	Q77Z09	Phage_21	92.6	1.1e-19
>prophage 5
CP023470	Salmonella enterica subsp. enterica strain BAA-1672 chromosome, complete genome	4483399	1893646	1903176	4483399	protease,integrase	Ralstonia_phage(16.67%)	9	1888437:1888451	1901912:1901926
1888437:1888451	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
AXR38359.1|1893646_1894024_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	2.6e-20
AXR40711.1|1894185_1894383_+	hypothetical protein	NA	NA	NA	NA	NA
AXR38360.1|1895783_1896314_+	adhesin	NA	NA	NA	NA	NA
AXR38361.1|1896812_1899089_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	6.9e-164
AXR38362.1|1899119_1899440_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AXR38363.1|1899763_1899985_+	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AXR38364.1|1899939_1900134_-	hypothetical protein	NA	NA	NA	NA	NA
AXR38365.1|1900114_1902061_-	macrolide ABC transporter permease/ATP-binding protein MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
1901912:1901926	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
AXR38366.1|1902057_1903176_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
>prophage 6
CP023470	Salmonella enterica subsp. enterica strain BAA-1672 chromosome, complete genome	4483399	2526224	2625206	4483399	capsid,tRNA,plate,integrase,head,portal,tail	Salmonella_phage(82.0%)	91	2588383:2588427	2621847:2621891
AXR38919.1|2526224_2526719_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
AXR38920.1|2526734_2528618_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AXR38921.1|2528614_2529610_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AXR38922.1|2529620_2530676_+	cytoplasmic protein	NA	NA	NA	NA	NA
AXR40743.1|2531206_2531938_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.9	6.4e-39
AXR38923.1|2532001_2532469_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.9	4.7e-51
AXR38924.1|2532465_2533188_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXR38925.1|2533222_2533978_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AXR38926.1|2534049_2535417_+	murein transglycosylase D	NA	A0A0A7NU10	Lactobacillus_phage	33.0	1.4e-10
AXR38927.1|2535472_2536243_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXR38928.1|2536320_2537121_-	EEP domain-containing protein	NA	NA	NA	NA	NA
AXR38929.1|2537252_2538428_-	MFS transporter	NA	NA	NA	NA	NA
AXR38930.1|2538532_2539447_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXR38931.1|2539468_2540272_-	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	34.6	5.1e-37
AXR38932.1|2546274_2548848_-	chaperone protein ClpB	NA	H6X3M6	Enterobacteria_phage	35.5	2.6e-127
AXR38933.1|2548977_2549709_-	hypothetical protein	NA	NA	NA	NA	NA
AXR38934.1|2549705_2550686_-	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
AXR38935.1|2550817_2551555_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AXR38936.1|2551826_2552165_+	ribosomal subunit interface protein	NA	NA	NA	NA	NA
AXR38937.1|2552415_2553576_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
AXR38938.1|2553536_2554445_-	gluconolactonase	NA	NA	NA	NA	NA
AXR38939.1|2554502_2555624_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
AXR38940.1|2557143_2557662_+	DUF4154 domain-containing protein	NA	NA	NA	NA	NA
AXR38941.1|2557654_2558875_+	diguanylate cyclase	NA	A0A2K8I9Y5	Pseudomonas_phage	37.0	1.7e-07
AXR38942.1|2559031_2559379_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AXR38943.1|2559419_2560187_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AXR40744.1|2560231_2560780_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AXR38944.1|2560798_2561047_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AXR38945.1|2561298_2562660_-	signal recognition particle protein	NA	NA	NA	NA	NA
AXR38946.1|2562825_2563617_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
AXR38947.1|2563681_2564923_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AXR38948.1|2565052_2565658_+	cytoplasmic protein	NA	NA	NA	NA	NA
AXR38949.1|2565698_2566289_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AXR38950.1|2566285_2566480_-	molecular chaperone GrpE	NA	NA	NA	NA	NA
AXR38951.1|2566411_2567290_+	NAD(+) kinase	NA	NA	NA	NA	NA
AXR38952.1|2567375_2569037_+	DNA repair protein RecN	NA	NA	NA	NA	NA
AXR38953.1|2569185_2569524_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
AXR38954.1|2569689_2569980_-	RnfH family protein	NA	NA	NA	NA	NA
AXR38955.1|2569969_2570446_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AXR40745.1|2570595_2571078_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
AXR38956.1|2583235_2584645_+	type I secretion protein TolC	NA	NA	NA	NA	NA
AXR38957.1|2584641_2586822_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
AXR40746.1|2586829_2587993_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
2588383:2588427	attL	ATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCA	NA	NA	NA	NA
AXR38958.1|2588544_2588763_-	levansucrase regulator	NA	E5G6Q4	Salmonella_phage	100.0	2.1e-38
AXR38959.1|2588831_2589932_-	late control protein D	NA	E5G6Q3	Salmonella_phage	100.0	2.6e-201
AXR38960.1|2589928_2590414_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	4.4e-76
AXR38961.1|2590410_2593218_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	99.6	0.0e+00
AXR38962.1|2593210_2593330_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	100.0	1.8e-15
AXR38963.1|2593344_2593647_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	100.0	1.5e-45
AXR38964.1|2593701_2594217_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
AXR38965.1|2594226_2595399_-|tail	phage tail protein	tail	E5G6P7	Salmonella_phage	98.5	1.2e-220
AXR38966.1|2595501_2595726_-	Hin recombinase	NA	E5G6P5	Salmonella_phage	100.0	1.5e-34
AXR38967.1|2595759_2596008_+|tail	phage tail protein	tail	A0A1B0VCD0	Salmonella_phage	69.1	2.0e-24
AXR38968.1|2596601_2597177_-|tail	tail fiber assembly protein	tail	E5G6P1	Salmonella_phage	100.0	4.3e-107
AXR38969.1|2597176_2599030_-|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	96.9	0.0e+00
AXR38970.1|2599026_2599632_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	100.0	2.6e-118
AXR38971.1|2599624_2600542_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	98.4	9.5e-157
AXR38972.1|2600528_2600888_-|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	95.0	1.2e-57
AXR38973.1|2600884_2601463_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
AXR38974.1|2601531_2601978_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	91.1	7.6e-67
AXR38975.1|2601970_2602402_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	95.1	4.0e-73
AXR38976.1|2602364_2602568_-	hypothetical protein	NA	A0A1S6KZX6	Salmonella_phage	98.5	1.7e-29
AXR38977.1|2602497_2602926_-	hypothetical protein	NA	A0A1S6KZX8	Salmonella_phage	95.0	2.6e-64
AXR38978.1|2603300_2603810_-	glycoside hydrolase	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
AXR38979.1|2603790_2604006_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	100.0	5.9e-33
AXR38980.1|2604009_2604213_-|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
AXR38981.1|2604212_2604677_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	94.8	2.5e-81
AXR38982.1|2604770_2605421_-	hypothetical protein	NA	A0A1S6KZX1	Salmonella_phage	98.6	5.4e-114
AXR38983.1|2605417_2606485_-|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	98.3	4.8e-192
AXR38984.1|2606501_2607335_-|capsid	capsid protein	capsid	E5G6M5	Salmonella_phage	97.5	1.4e-127
AXR38985.1|2607477_2609244_+	oxidoreductase	NA	A0A1S6KZW3	Salmonella_phage	95.1	0.0e+00
AXR38986.1|2609243_2610284_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	90.1	3.0e-183
AXR38987.1|2610369_2612121_-	AIPR family protein	NA	NA	NA	NA	NA
AXR38988.1|2612470_2613349_+	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.8	4.0e-51
AXR38989.1|2613459_2613759_+	hypothetical protein	NA	NA	NA	NA	NA
AXR38990.1|2613827_2614016_-	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	100.0	2.7e-26
AXR38991.1|2614171_2616583_-	endonuclease	NA	A0A1S6L028	Salmonella_phage	95.8	0.0e+00
AXR38992.1|2616573_2617431_-	DNA adenine methylase	NA	A0A1S6L011	Salmonella_phage	79.6	3.0e-128
AXR38993.1|2617427_2617655_-	hypothetical protein	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
AXR38994.1|2617654_2617888_-	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	1.5e-26
AXR38995.1|2617955_2618297_-	hypothetical protein	NA	E5G6L5	Salmonella_phage	84.1	1.6e-48
AXR38996.1|2618516_2618975_+	hypothetical protein	NA	NA	NA	NA	NA
AXR38997.1|2618922_2619156_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	59.1	3.6e-12
AXR38998.1|2619163_2619673_-	hypothetical protein	NA	A0A1S6L008	Salmonella_phage	94.1	3.5e-84
AXR38999.1|2619705_2619948_-	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
AXR39000.1|2620067_2620700_+	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	99.5	3.3e-116
AXR39001.1|2620703_2621729_+|integrase	integrase	integrase	A0A1S6L016	Salmonella_phage	99.4	2.4e-201
AXR39002.1|2621895_2622129_-	hypothetical protein	NA	NA	NA	NA	NA
2621847:2621891	attR	ATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCA	NA	NA	NA	NA
AXR39003.1|2622414_2622954_-	phase 1 flagellin transcriptional repressor	NA	NA	NA	NA	NA
AXR39004.1|2623021_2624542_-	flagellin FliC	NA	NA	NA	NA	NA
AXR39005.1|2624633_2625206_+	DNA-invertase hin	NA	A0A0A7NPV4	Enterobacteria_phage	72.1	2.0e-67
>prophage 7
CP023470	Salmonella enterica subsp. enterica strain BAA-1672 chromosome, complete genome	4483399	4358069	4368743	4483399	integrase	Enterobacteria_phage(55.56%)	13	4354490:4354506	4363158:4363174
4354490:4354506	attL	GCCCGCGATGATAAAAA	NA	NA	NA	NA
AXR40535.1|4358069_4359089_-	NAD(P)-dependent alcohol dehydrogenase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.4	7.9e-43
AXR40536.1|4359559_4360819_+|integrase	integrase	integrase	B7SYF8	Stenotrophomonas_phage	41.2	3.7e-74
AXR40537.1|4360872_4361868_-	site-specific DNA-methyltransferase	NA	S0A236	Cellulophaga_phage	24.2	3.5e-19
AXR40538.1|4361923_4362160_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXR40539.1|4362156_4362720_+	restriction endonuclease	NA	A0A1B0UXL9	Roseobacter_phage	42.9	7.2e-30
AXR40540.1|4362790_4362976_+	hypothetical protein	NA	NA	NA	NA	NA
AXR40541.1|4362939_4363506_-	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	62.7	1.0e-55
4363158:4363174	attR	TTTTTATCATCGCGGGC	NA	NA	NA	NA
AXR40542.1|4363522_4363768_-	hypothetical protein	NA	Q7M294	Enterobacteria_phage	76.5	6.3e-31
AXR40543.1|4363764_4364502_-	glycoprotein 3	NA	Q7M2A2	Enterobacteria_phage	64.9	3.4e-80
AXR40544.1|4365302_4365854_+	Ash-like/host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	60.9	2.0e-24
AXR40545.1|4365850_4366078_+	hypothetical protein	NA	NA	NA	NA	NA
AXR40546.1|4366074_4366395_+	hypothetical protein	NA	NA	NA	NA	NA
AXR40547.1|4366409_4368743_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	84.4	0.0e+00
>prophage 1
CP023471	Salmonella enterica subsp. enterica strain BAA-1672 plasmid pSalSendai, complete sequence	81125	49742	56920	81125	transposase	Enterobacteria_phage(33.33%)	9	NA	NA
AXR40862.1|49742_50912_+|transposase	transposase	transposase	A0A077SLN2	Escherichia_phage	84.6	9.6e-178
AXR40863.1|50915_51125_+	DUF4113 domain-containing protein	NA	A0A1W6JNT0	Morganella_phage	53.4	2.5e-12
AXR40864.1|51265_52228_-	chromosome partitioning protein ParB	NA	Q1MVJ4	Enterobacteria_phage	68.3	3.1e-113
AXR40865.1|52224_53430_-	ParA family protein	NA	Q1MVJ3	Enterobacteria_phage	89.4	5.6e-205
AXR40866.1|53803_54016_+	hypothetical protein	NA	NA	NA	NA	NA
AXR40867.1|54188_54440_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
AXR40868.1|54436_54724_+	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	48.4	5.8e-20
AXR40869.1|55010_55301_+	hypothetical protein	NA	NA	NA	NA	NA
AXR40870.1|55942_56920_+	replication initiation protein	NA	J9Q7H0	Salmonella_phage	63.5	3.9e-100
