assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003432365.1_ASM343236v1	CP031838	Staphylococcus aureus strain QD-CD9 chromosome, complete genome	3	646651-646741	2	CRISPRCasFinder	no	csa3	WYL,csa3,DEDDh,cas3,DinG	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|31aa|up_3|CP031838.1_644845_644938_-,NA|53aa|up_2|CP031838.1_645373_645532_-,NA|61aa|up_1|CP031838.1_645596_645779_+,NA|35aa|up_0|CP031838.1_646211_646316_+,NA|364aa|down_0|CP031838.1_646757_647849_-,NA|77aa|down_5|CP031838.1_651638_651869_+	NA|145aa|up_9|CP031838.1_636139_636574_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_8|CP031838.1_636585_638718_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_7|CP031838.1_638752_640291_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_6|CP031838.1_640971_642777_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_5|CP031838.1_643008_643791_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_4|CP031838.1_643858_644716_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_3|CP031838.1_644845_644938_-	NA	NA|53aa|up_2|CP031838.1_645373_645532_-	NA	NA|61aa|up_1|CP031838.1_645596_645779_+	NA	NA|35aa|up_0|CP031838.1_646211_646316_+	NA	NA|364aa|down_0|CP031838.1_646757_647849_-	NA	NA|327aa|down_1|CP031838.1_648114_649095_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|CP031838.1_649096_649417_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|CP031838.1_649568_650234_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|CP031838.1_650669_651608_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|CP031838.1_651638_651869_+	NA	NA|458aa|down_6|CP031838.1_652540_653914_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|CP031838.1_654370_654784_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|CP031838.1_654983_655427_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|CP031838.1_655547_656258_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCA_003432365.1_ASM343236v1	CP031838	Staphylococcus aureus strain QD-CD9 chromosome, complete genome	5	1178825-1178912	4	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TGGGGCCCCAACACAGAAGCTGACGAAAAG	30	1	10	1178855-1178882|1178855-1178882|1178855-1178882|1178855-1178882|1178855-1178882|1178855-1178882|1178855-1178882|1178855-1178882|1178855-1178882|1178855-1178882	CP031838.1_837978-838005|CP031838.1_848671-848698|CP031838.1_1358076-1358103|CP031838.1_1577169-1577142|CP031838.1_1660978-1660951|CP031838.1_1762967-1762994|CP031838.1_1923278-1923251|CP031838.1_2006646-2006673|CP031838.1_2015362-2015389|CP031838.1_2474983-2474956	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|190aa|up_9|CP031838.1_1169489_1170059_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|CP031838.1_1170048_1170633_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|CP031838.1_1170633_1170987_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|CP031838.1_1170989_1171706_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|CP031838.1_1171745_1172432_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|CP031838.1_1172523_1172985_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|CP031838.1_1173043_1175191_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|CP031838.1_1175247_1176222_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|CP031838.1_1176266_1176518_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|CP031838.1_1176863_1178687_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|CP031838.1_1179249_1180374_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|CP031838.1_1180474_1181452_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|CP031838.1_1181483_1182110_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|CP031838.1_1182178_1184011_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|CP031838.1_1184146_1185286_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|CP031838.1_1185289_1186228_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|CP031838.1_1186229_1186982_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|CP031838.1_1186988_1188335_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|CP031838.1_1188627_1188804_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|CP031838.1_1189047_1189731_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCA_003432365.1_ASM343236v1	CP031838	Staphylococcus aureus strain QD-CD9 chromosome, complete genome	6	2177915-2178008	5	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	GGCTTTTATGCAGTTGCTGCACAAACAA	28	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|239aa|up_5|CP031838.1_2172743_2173460_-,NA|169aa|up_4|CP031838.1_2173621_2174128_-,NA	NA|75aa|up_9|CP031838.1_2168866_2169091_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|CP031838.1_2169284_2170214_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|CP031838.1_2171161_2171536_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|CP031838.1_2171786_2172575_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|CP031838.1_2172743_2173460_-	NA	NA|169aa|up_4|CP031838.1_2173621_2174128_-	NA	NA|267aa|up_3|CP031838.1_2174263_2175064_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|CP031838.1_2175047_2175767_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|CP031838.1_2175821_2176772_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|CP031838.1_2176919_2177747_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|CP031838.1_2178123_2178759_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|CP031838.1_2179028_2180690_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_2|CP031838.1_2180686_2181070_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|CP031838.1_2181378_2182389_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_4|CP031838.1_2182887_2183409_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|CP031838.1_2183436_2184732_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|CP031838.1_2184771_2185248_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|CP031838.1_2185416_2185953_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|CP031838.1_2186163_2187102_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|209aa|down_9|CP031838.1_2187371_2187998_-	pfam04276, DUF443, Protein of unknown function (DUF443)
