The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP020378	Clostridioides difficile strain DSM 102859 chromosome, complete genome	4247015	202435	245444	4247015	transposase,protease	Geobacillus_virus(14.29%)	35	NA	NA
AXU26132.1|202435_203152_+|protease	glycoprotease	protease	NA	NA	NA	NA
AXU26133.1|203141_203438_+	ribosomal-protein-alanine acetyltransferase	NA	NA	NA	NA	NA
AXU26134.1|204080_205190_+|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	53.5	9.6e-111
AXU26135.1|205254_205497_+	ribosomal-protein-alanine acetyltransferase	NA	NA	NA	NA	NA
AXU26136.1|205502_206519_+	DNA-binding/iron metalloprotein/AP endonuclease	NA	A0A0R6PI74	Moraxella_phage	44.1	1.0e-71
AXU26137.1|206815_209524_+	4-hydroxyphenylacetate decarboxylase, catalytic subunit	NA	NA	NA	NA	NA
AXU26138.1|209527_209785_+	4-hydroxyphenylacetate decarboxylase, regulatory subunit	NA	NA	NA	NA	NA
AXU26139.1|209777_210728_+	4-hydroxyphenylacetate decarboxylase activating subunit	NA	NA	NA	NA	NA
AXU26140.1|211042_212005_+|protease	membrane-associated CAAX amino terminal protease	protease	NA	NA	NA	NA
AXU26141.1|212394_212907_-|protease	membrane-associated caaX amino terminal protease	protease	NA	NA	NA	NA
AXU26142.1|214210_214678_+	glyoxalase	NA	NA	NA	NA	NA
AXU26143.1|215856_216570_+	two-component response regulator	NA	A0A2R2ZGH8	Clostridioides_phage	35.0	1.7e-28
AXU26144.1|216842_218615_+	lantibiotic ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.9	1.6e-14
AXU26145.1|218637_220059_+	radical SAM family protein	NA	NA	NA	NA	NA
AXU26146.1|220087_221158_+	peptide maturation system protein	NA	NA	NA	NA	NA
AXU26147.1|221173_221425_+	peptide maturation system acyl carrier-related protein	NA	NA	NA	NA	NA
AXU26148.1|221475_221679_+	hypothetical protein	NA	NA	NA	NA	NA
AXU26149.1|222164_222458_+	hypothetical protein	NA	NA	NA	NA	NA
AXU26150.1|222589_223939_-	amino acid transporter	NA	NA	NA	NA	NA
AXU26151.1|223975_225196_-	amidohydrolase/peptidase	NA	NA	NA	NA	NA
AXU26152.1|228045_228696_+	cyclic nucleotide-binding protein	NA	NA	NA	NA	NA
AXU26153.1|228835_230212_-	drug/sodium antiporter	NA	NA	NA	NA	NA
AXU26154.1|230227_232141_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	32.4	3.4e-63
AXU26155.1|232276_232909_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
AXU26156.1|233056_233587_+	formylmethanofuran dehydrogenase subunit E	NA	NA	NA	NA	NA
AXU26157.1|233763_233934_-	ferredoxin	NA	NA	NA	NA	NA
AXU26158.1|234218_235286_+	lipoprotein	NA	NA	NA	NA	NA
AXU26159.1|235455_237357_+	oxidoreductase, acetyl-CoA synthase subunit	NA	NA	NA	NA	NA
AXU26160.1|237337_237823_+	oxidoreductase, electron transfer subunit	NA	NA	NA	NA	NA
AXU26161.1|237797_239024_+	oxidoreductase, NAD/FAD binding subunit	NA	NA	NA	NA	NA
AXU26162.1|239162_240350_-	cyclopropane-fatty-acyl-phospholipid synthase	NA	A0A2I2L5L3	Orpheovirus	33.8	5.5e-48
AXU26163.1|240622_241447_+	ATP-binding protein	NA	NA	NA	NA	NA
AXU26164.1|241575_242841_+	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
AXU26165.1|242984_244487_+|transposase	transposase	transposase	A0ZS58	Staphylococcus_virus	30.8	1.0e-51
AXU26166.1|244778_245444_+|protease	membrane-associated metalloprotease	protease	NA	NA	NA	NA
>prophage 2
CP020378	Clostridioides difficile strain DSM 102859 chromosome, complete genome	4247015	283166	299342	4247015		Synechococcus_phage(23.08%)	14	NA	NA
AXU26199.1|283166_283679_-	nitroreductase	NA	A0A1V0E011	Clostridioides_phage	87.6	4.6e-84
AXU26200.1|284127_284604_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
AXU26201.1|284609_285308_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AXU26202.1|285319_286687_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
AXU26203.1|286680_287757_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	2.2e-64
AXU26204.1|287750_288344_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
AXU26205.1|288336_289869_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AXU26206.1|289879_291130_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AXU26207.1|291154_294961_+	formylglycinamidine ribonucleotide synthetase	NA	A6N228	Microbacterium_phage	24.4	8.9e-31
AXU26208.1|295166_296039_+	dtdp-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	2.3e-14
AXU26209.1|296147_297017_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	61.1	8.1e-97
AXU26210.1|297065_297623_+	dtdp-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.0	1.7e-47
AXU26211.1|297660_298644_+	dtdp-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	48.3	2.0e-80
AXU26212.1|298673_299342_+	transglycosylase	NA	A0A0H3V0Q1	Geobacillus_virus	46.9	4.1e-24
>prophage 3
CP020378	Clostridioides difficile strain DSM 102859 chromosome, complete genome	4247015	454861	467859	4247015		Streptococcus_phage(100.0%)	13	NA	NA
AXU26356.1|454861_455188_+	conjugative transposon protein	NA	A0A1S5SF38	Streptococcus_phage	52.4	1.4e-25
AXU26357.1|455203_455587_+	conjugative transposon protein	NA	A0A1S5SF96	Streptococcus_phage	55.1	8.9e-32
AXU26358.1|455688_456453_+	beta-lactamase domain-containing protein	NA	NA	NA	NA	NA
AXU26359.1|456551_457946_+	conjugative transposon FtsK/SpoIIIE-like protein	NA	A0A1S5SFB5	Streptococcus_phage	65.9	1.1e-177
AXU26360.1|458129_459326_+	conjugative transposon replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	63.3	6.6e-150
AXU26361.1|459339_459474_+	conjugative transposon protein	NA	NA	NA	NA	NA
AXU26362.1|459475_459697_+	conjugative transposon protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	2.6e-28
AXU26363.1|459770_460373_+	hydrolase	NA	NA	NA	NA	NA
AXU26364.1|460676_461180_+	conjugative tansposon protein	NA	NA	NA	NA	NA
AXU26365.1|461197_461701_+	conjugative transposon protein	NA	A0A1S5SF25	Streptococcus_phage	60.2	1.1e-53
AXU26366.1|462194_464645_+	conjugative transposon protein	NA	A0A1S5SF64	Streptococcus_phage	75.7	0.0e+00
AXU26367.1|464644_466855_+	conjugative transposon protein	NA	A0A1S5SF30	Streptococcus_phage	58.7	5.1e-180
AXU26368.1|466851_467859_+	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	67.3	1.9e-129
>prophage 4
CP020378	Clostridioides difficile strain DSM 102859 chromosome, complete genome	4247015	530580	547983	4247015		Streptococcus_phage(91.67%)	16	NA	NA
AXU26418.1|530580_530895_+	conjugative transposon protein	NA	A0A1S5SF38	Streptococcus_phage	75.7	3.3e-40
AXU26419.1|530908_531286_+	conjugative transposon protein	NA	A0A1S5SF96	Streptococcus_phage	80.2	2.9e-43
AXU26420.1|531312_532716_+	conjugative transposon FtsK/SpoIIIE family protein	NA	A0A1S5SFB5	Streptococcus_phage	71.5	4.1e-183
AXU26421.1|532906_534094_+	conjugative transposon replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	65.8	3.7e-153
AXU26422.1|534164_534386_+	conjugative transposon protein	NA	A0A1S5SEY0	Streptococcus_phage	84.7	2.2e-27
AXU26423.1|534475_535600_+	hypothetical protein	NA	NA	NA	NA	NA
AXU26424.1|535600_535936_+	hypothetical protein	NA	NA	NA	NA	NA
AXU26425.1|536042_536546_+	conjugative transposon antirestriction protein	NA	A0A1S5SF25	Streptococcus_phage	57.3	1.6e-49
AXU26426.1|536966_537617_+	hypothetical protein	NA	NA	NA	NA	NA
AXU26427.1|537897_539016_+	hypothetical protein	NA	NA	NA	NA	NA
AXU26428.1|539179_539596_+	conjugative transposon protein	NA	A0A1S5SEX7	Streptococcus_phage	69.8	3.6e-47
AXU26429.1|539555_542003_+	conjugative transposon ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	79.0	0.0e+00
AXU26430.1|542002_544222_+	conjugative transposon protein	NA	A0A1S5SF30	Streptococcus_phage	56.3	4.1e-169
AXU26431.1|544218_545217_+	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	62.8	2.4e-121
AXU26432.1|545230_546124_+	conjugative transposon protein	NA	A0A1S5SF22	Streptococcus_phage	53.2	3.5e-79
AXU26433.1|546507_547983_+	type i restriction enzyme m subunit	NA	A0A1W6JNK1	Staphylococcus_phage	26.2	2.5e-21
>prophage 5
CP020378	Clostridioides difficile strain DSM 102859 chromosome, complete genome	4247015	750284	793818	4247015	coat,transposase,protease	Geobacillus_virus(33.33%)	44	NA	NA
AXU26591.1|750284_750506_+|coat	Spore coat associated protein JA (CotJA)	coat	NA	NA	NA	NA
AXU26592.1|750652_750967_+|coat	spore-coat protein	coat	NA	NA	NA	NA
AXU26593.1|751433_751847_-	transcriptional regulator	NA	NA	NA	NA	NA
AXU26594.1|752367_752901_+	methylated-DNA--protein-cysteine methyltransferase 1	NA	M1PFU9	Streptococcus_phage	49.4	1.3e-33
AXU26595.1|753653_754754_-	hypothetical protein	NA	NA	NA	NA	NA
AXU26596.1|755219_755633_+	hypothetical protein	NA	NA	NA	NA	NA
AXU26597.1|755707_756244_+	glutamate-rich protein GrpB	NA	NA	NA	NA	NA
AXU26598.1|756403_756544_+	hypothetical protein	NA	NA	NA	NA	NA
AXU26599.1|756655_757978_+	Cl- channel voltage-gated family protein	NA	NA	NA	NA	NA
AXU26600.1|758755_759607_+|protease	membrane-associated metalloprotease	protease	NA	NA	NA	NA
AXU26601.1|759961_760531_+	glutamate-rich protein GrpB	NA	NA	NA	NA	NA
AXU26602.1|760867_762205_-	two-component sensor histidine kinase	NA	X5JAC0	Clostridium_phage	22.9	4.0e-10
AXU26603.1|762474_763185_-	two-component response regulator	NA	NA	NA	NA	NA
AXU26604.1|763366_765478_-	ABC transporter permease	NA	NA	NA	NA	NA
AXU26605.1|765467_766220_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.3	6.9e-28
AXU26606.1|766987_767164_-	hypothetical protein	NA	NA	NA	NA	NA
AXU26607.1|767267_767849_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AXU26608.1|767973_768798_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AXU26609.1|768975_769869_-	hypothetical protein	NA	NA	NA	NA	NA
AXU26610.1|770124_770562_-	transcriptional regulator	NA	NA	NA	NA	NA
AXU26611.1|770981_771212_-	hypothetical protein	NA	NA	NA	NA	NA
AXU26612.1|771436_771658_-	hypothetical protein	NA	NA	NA	NA	NA
AXU26613.1|772285_772543_+	phage-related regulatory protein	NA	NA	NA	NA	NA
AXU26614.1|774736_776038_+	phage-related replicative helicase	NA	A0A218KST2	Xenohaliotis_phage	29.3	1.1e-20
AXU26615.1|776113_776389_+	phage positive regulator of late transcription	NA	NA	NA	NA	NA
AXU26616.1|777391_777622_+	ferredoxin	NA	NA	NA	NA	NA
AXU26617.1|777614_778196_+	4Fe-4S ferredoxin	NA	NA	NA	NA	NA
AXU26618.1|778774_779452_-	transcriptional regulator	NA	NA	NA	NA	NA
AXU26619.1|779640_781005_-	drug/sodium antiporter	NA	NA	NA	NA	NA
AXU26620.1|781132_781654_+	HTH containing transcriptional regulator	NA	NA	NA	NA	NA
AXU26621.1|781820_782789_+	DNA alkylation repair protein	NA	NA	NA	NA	NA
AXU26622.1|783112_783481_+	hypothetical protein	NA	NA	NA	NA	NA
AXU26623.1|783663_784395_+	hydrolase	NA	NA	NA	NA	NA
AXU26624.1|784788_785679_+	radical SAM superfamily protein	NA	NA	NA	NA	NA
AXU26625.1|786044_786488_+	acetyltransferase	NA	NA	NA	NA	NA
AXU26626.1|786659_786830_+	hypothetical protein	NA	NA	NA	NA	NA
AXU26627.1|787203_788301_+|transposase	PD-(D/E)XK nuclease family transposase	transposase	NA	NA	NA	NA
AXU26628.1|788505_788994_+	hypothetical protein	NA	NA	NA	NA	NA
AXU26629.1|789079_789487_+	hypothetical protein	NA	NA	NA	NA	NA
AXU26630.1|789538_789706_+	transcriptional regulator	NA	NA	NA	NA	NA
AXU26631.1|790260_790566_+	hypothetical protein	NA	NA	NA	NA	NA
AXU26632.1|790742_791381_+	fic family protein	NA	NA	NA	NA	NA
AXU26633.1|792290_792698_+|transposase	ISCpe2, transposase orfA	transposase	A0A0H3UZM0	Geobacillus_virus	45.3	1.2e-23
AXU26634.1|792708_793818_+|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	2.5e-111
>prophage 6
CP020378	Clostridioides difficile strain DSM 102859 chromosome, complete genome	4247015	1228969	1282070	4247015	plate,portal,tail,terminase	Clostridium_phage(71.43%)	87	NA	NA
AXU26989.1|1228969_1230136_-	prophage lambdaba04, site-specific recombinase	NA	A0A0A8WIF9	Clostridium_phage	98.5	7.0e-221
AXU26990.1|1230272_1230479_-	hypothetical protein	NA	A0A0A8WJ70	Clostridium_phage	100.0	1.5e-30
AXU26991.1|1230537_1230759_-	antitoxin HipB	NA	A0A0A8WFX6	Clostridium_phage	95.9	8.1e-30
AXU26992.1|1231216_1231594_-	helix-turn-helix domain-containing protein	NA	A0A0A8WJW3	Clostridium_phage	100.0	2.1e-62
AXU26993.1|1231790_1232024_+	BetR domain protein	NA	A0A0A8WFL5	Clostridium_phage	100.0	1.0e-35
AXU26994.1|1232023_1232812_+	phage anti-repressor	NA	A0A0A8WIJ5	Clostridium_phage	90.8	2.7e-123
AXU26995.1|1232871_1233075_+	hypothetical protein	NA	NA	NA	NA	NA
AXU26996.1|1233079_1233859_-	hypothetical protein	NA	NA	NA	NA	NA
AXU26997.1|1233934_1234132_+	phage regulatory protein	NA	A0A0A8WE47	Clostridium_phage	80.0	5.0e-23
AXU26998.1|1234170_1234605_+	hypothetical protein	NA	A0A0A8WFG8	Clostridium_phage	97.9	1.3e-71
AXU26999.1|1234930_1235158_+	hypothetical protein	NA	A0A0A8WJ12	Clostridium_phage	39.7	2.2e-06
AXU27000.1|1235171_1235489_+	hypothetical protein	NA	J9QE26	Clostridium_phage	95.2	1.1e-43
AXU27001.1|1235573_1236089_+	phage protein	NA	A0A0A8WJQ2	Clostridium_phage	94.1	5.3e-80
AXU27002.1|1236090_1236993_+	phage recombination protein	NA	A8ATK8	Listeria_phage	43.4	5.5e-40
AXU27003.1|1237005_1237839_+	phage protein	NA	A0A0A8WI94	Clostridium_phage	59.9	2.5e-79
AXU27004.1|1237908_1238085_+	hypothetical protein	NA	NA	NA	NA	NA
AXU27005.1|1238074_1238296_+	hypothetical protein	NA	NA	NA	NA	NA
AXU27006.1|1238313_1238694_+	NUMOD1 domain protein	NA	X5JAK1	Clostridium_phage	90.5	3.0e-56
AXU27007.1|1238662_1238812_+	hypothetical protein	NA	A0A0A8WJQ3	Clostridium_phage	93.9	5.9e-16
AXU27008.1|1238798_1239257_+	YopX protein	NA	A0A0A8WF29	Clostridium_phage	61.0	1.5e-46
AXU27009.1|1239231_1239390_+	hypothetical protein	NA	X5JB46	Clostridium_phage	85.4	6.4e-13
AXU27010.1|1239386_1239560_+	hypothetical protein	NA	Q24LE0	Clostridium_phage	93.0	1.0e-27
AXU27011.1|1239559_1239685_+	hypothetical protein	NA	X5JA07	Clostridium_phage	75.6	5.3e-10
AXU27012.1|1239677_1239836_+	hypothetical protein	NA	A0A0A8WJ18	Clostridium_phage	88.0	4.8e-16
AXU27013.1|1239839_1240163_+	hypothetical protein	NA	X5JAK2	Clostridium_phage	50.0	3.2e-22
AXU27014.1|1240164_1240464_+	hypothetical protein	NA	NA	NA	NA	NA
AXU27015.1|1240570_1241644_+	DNA methylase	NA	A0A0A8WFL3	Clostridium_phage	99.7	1.0e-210
AXU27016.1|1241720_1241942_+	hypothetical protein	NA	A0A090D884	Clostridium_phage	100.0	1.9e-34
AXU27017.1|1241938_1242943_+	phage protein	NA	J9QE81	Clostridium_phage	94.6	2.6e-179
AXU27018.1|1243024_1243354_+	hypothetical protein	NA	A0A0A8WI99	Clostridium_phage	99.1	3.1e-57
AXU27019.1|1243395_1243647_+	hypothetical protein	NA	A0A2H4J246	uncultured_Caudovirales_phage	48.8	3.5e-05
AXU27020.1|1243785_1244184_+	phage protein	NA	A0A0A8WEK3	Clostridium_phage	75.0	3.1e-51
AXU27021.1|1244173_1244581_+	phage protein	NA	A0A0A8WJX1	Clostridium_phage	91.0	4.6e-63
AXU27022.1|1244643_1245381_+	phage anti-repressor protein	NA	Q24LC6	Clostridium_phage	56.3	2.5e-67
AXU27023.1|1245484_1245967_+	DNA-binding protein	NA	B6SBZ4	Clostridium_virus	98.8	2.7e-70
AXU27024.1|1246700_1246874_+	hypothetical protein	NA	A0A0A8WJV0	Clostridium_phage	98.2	8.3e-22
AXU27025.1|1246873_1247485_+	phage protein	NA	A0A0A8WFI2	Clostridium_phage	100.0	6.9e-111
AXU27026.1|1247562_1247964_+	hypothetical protein	NA	NA	NA	NA	NA
AXU27027.1|1248068_1248833_+	phage DNA-binding protein	NA	A0A0A8WFS6	Clostridium_phage	88.9	3.9e-103
AXU27028.1|1248819_1250175_+|terminase	phage terminase large subunit	terminase	A0A1L2JY46	Aeribacillus_phage	65.9	2.0e-163
AXU27029.1|1250174_1251698_+|portal	SPP1 Gp6-like phage portal protein	portal	A0A0A7RW62	Clostridium_phage	66.3	1.7e-190
AXU27030.1|1251710_1253330_+	hypothetical protein	NA	A0A2H4J048	uncultured_Caudovirales_phage	42.6	4.1e-70
AXU27031.1|1253331_1253484_+	hypothetical protein	NA	NA	NA	NA	NA
AXU27032.1|1253550_1254204_+	phage scaffold protein	NA	I1TLE1	Bacillus_phage	45.3	6.9e-08
AXU27033.1|1254215_1254572_+	hypothetical protein	NA	A0A2H4J872	uncultured_Caudovirales_phage	72.9	3.0e-42
AXU27034.1|1254595_1255624_+	phage protein	NA	A0A1J1GG50	Clostridium_phage	99.4	5.1e-191
AXU27035.1|1255641_1255848_+	hypothetical protein	NA	A0A0A7RTZ2	Clostridium_phage	50.0	2.8e-08
AXU27036.1|1255850_1256168_+	hypothetical protein	NA	A0A2H4J040	uncultured_Caudovirales_phage	69.0	6.6e-33
AXU27037.1|1256164_1256548_+	hypothetical protein	NA	NA	NA	NA	NA
AXU27038.1|1256558_1256969_+	hypothetical protein	NA	B6SBT4	Clostridium_virus	57.8	7.8e-42
AXU27039.1|1256970_1257795_+	hypothetical protein	NA	B6SBT5	Clostridium_virus	79.2	1.2e-123
AXU27040.1|1257807_1258011_+	hypothetical protein	NA	B6SBT6	Clostridium_virus	95.5	1.0e-26
AXU27041.1|1258012_1259434_+|tail	putative tail sheath protein	tail	B6SBT7	Clostridium_virus	96.6	3.8e-261
AXU27042.1|1259449_1259863_+	XkdM-like protein	NA	J9QE18	Clostridium_phage	91.2	3.0e-65
AXU27043.1|1259945_1260440_+	XkdN-like protein	NA	J9QDX1	Clostridium_phage	95.7	6.9e-77
AXU27044.1|1260616_1264894_+|tail	phage tail tape measure protein, TP901 family	tail	J9QEB7	Clostridium_phage	94.8	0.0e+00
AXU27045.1|1264975_1265776_+	Type IV secretory pathway, VirB10 component	NA	J9QE71	Clostridium_phage	65.0	2.6e-65
AXU27046.1|1265844_1266516_+	SH3 type 3 domain-containing protein	NA	B6SBU2	Clostridium_virus	94.6	2.1e-116
AXU27047.1|1266512_1267475_+	XkdQ-like protein	NA	B6SBU3	Clostridium_virus	97.2	2.1e-170
AXU27048.1|1267467_1267833_+	hypothetical protein	NA	B6SBU4	Clostridium_virus	95.0	3.1e-58
AXU27049.1|1267807_1268269_+	XkdS-like protein	NA	J9QEB8	Clostridium_phage	91.4	1.2e-75
AXU27050.1|1268273_1269410_+|plate	putative baseplate J-like protein	plate	J9QE72	Clostridium_phage	93.6	2.5e-199
AXU27051.1|1269406_1270177_+	XkdU related phage protein	NA	B6SBU7	Clostridium_virus	94.9	1.0e-135
AXU27052.1|1270177_1270558_+	hypothetical protein	NA	B6SBU8	Clostridium_virus	96.8	1.8e-64
AXU27053.1|1270569_1270998_+|tail	phage tail fiber protein	tail	A0A2R2ZGK9	Clostridioides_phage	73.5	5.8e-32
AXU27054.1|1271016_1272711_+	Glycine rich protein	NA	A0A0A8WI57	Clostridium_phage	75.7	1.0e-196
AXU27055.1|1272731_1273079_+	hypothetical protein	NA	A3QSB8	Clostridium_virus	82.6	3.4e-46
AXU27056.1|1273090_1273261_+	hypothetical protein	NA	A0A0A8WHY8	Clostridium_phage	67.9	8.2e-14
AXU27057.1|1273296_1273488_+	hypothetical protein	NA	A3QSB9	Clostridium_virus	93.7	1.3e-23
AXU27058.1|1273501_1274140_+|tail	tail fiber protein H	tail	A0A0A8WJ66	Clostridium_phage	98.6	3.0e-109
AXU27059.1|1274149_1274362_+	hypothetical protein	NA	A0A0A8WFX0	Clostridium_phage	100.0	4.6e-30
AXU27060.1|1274361_1274544_+	hypothetical protein	NA	J9QE73	Clostridium_phage	95.0	3.6e-23
AXU27061.1|1274582_1274813_+	Hemolysin XhlA	NA	A0A0A8WEZ7	Clostridium_phage	96.1	1.4e-32
AXU27062.1|1274828_1275089_+	phage membrane protein	NA	A0A0A8WJ67	Clostridium_phage	94.1	1.0e-39
AXU27063.1|1275085_1275883_+	phage-related cell wall hydrolase	NA	A0A0A8WIC2	Clostridium_phage	84.3	1.3e-130
AXU27064.1|1276132_1276624_+	hypothetical protein	NA	A0A0A8WFI1	Clostridium_phage	90.2	7.5e-84
AXU27065.1|1276626_1277193_+	hypothetical protein	NA	A0A0A8WJP5	Clostridium_phage	87.2	8.8e-28
AXU27066.1|1277281_1277578_+	hypothetical protein	NA	Q24LG2	Clostridium_phage	92.9	3.2e-45
AXU27067.1|1277604_1277817_-	hypothetical protein	NA	A0A1J1J924	Escherichia_phage	97.1	6.6e-13
AXU27068.1|1277998_1278448_+	hypothetical protein	NA	A0A0K2SUB9	Clostridium_phage	77.9	8.2e-61
AXU27069.1|1278459_1279107_+	putative bacteriophage protein	NA	A0A0K2SUH1	Clostridium_phage	87.3	6.0e-105
AXU27070.1|1279140_1279611_+	hypothetical protein	NA	A0A0A8WF76	Clostridium_phage	95.5	9.7e-81
AXU27071.1|1279851_1280151_-	hypothetical protein	NA	A0A0A8WJK3	Clostridium_phage	98.0	1.4e-45
AXU27072.1|1280358_1280559_-	hypothetical protein	NA	NA	NA	NA	NA
AXU27073.1|1280665_1280842_-	hypothetical protein	NA	NA	NA	NA	NA
AXU27074.1|1281199_1281577_+	regulatory protein	NA	A0A0A8WJU1	Clostridium_phage	93.6	1.2e-57
AXU27075.1|1281686_1282070_+	regulatory protein	NA	A3QSD4	Clostridium_virus	99.2	2.8e-62
>prophage 7
CP020378	Clostridioides difficile strain DSM 102859 chromosome, complete genome	4247015	1408357	1448215	4247015	head,transposase,tail,capsid,protease	Clostridium_phage(84.62%)	56	NA	NA
AXU27202.1|1408357_1409605_+|protease	protease	protease	Q6DW11	Phage_TP	37.6	2.1e-58
AXU27203.1|1409676_1411341_+	penicillin-binding protein	NA	NA	NA	NA	NA
AXU27204.1|1411437_1411722_-	RNA polymerase sigma-27/28 subunit RpsK/SigK	NA	NA	NA	NA	NA
AXU27205.1|1411744_1413262_-	site-specific recombinase	NA	I3VYZ3	Thermoanaerobacterium_phage	51.5	1.3e-134
AXU27206.1|1414019_1414124_+	hypothetical protein	NA	A0A090D809	Clostridium_phage	76.5	3.2e-05
AXU27207.1|1414563_1415037_-	phage protein	NA	B6SBW7	Clostridium_virus	96.8	6.8e-82
AXU27208.1|1415054_1415609_-	phage repressor	NA	B6SBW8	Clostridium_virus	37.6	1.2e-21
AXU27209.1|1415755_1416505_+	prophage antirepressor	NA	A0A0A8WIE3	Clostridium_phage	53.1	4.6e-48
AXU27210.1|1416561_1416783_+	hypothetical protein	NA	NA	NA	NA	NA
AXU27211.1|1416783_1417155_+	hypothetical protein	NA	NA	NA	NA	NA
AXU27212.1|1417190_1417442_+	hypothetical protein	NA	NA	NA	NA	NA
AXU27213.1|1417556_1417718_+	hypothetical protein	NA	A0A0A8WIF8	Clostridium_phage	79.1	1.8e-10
AXU27214.1|1417761_1417908_+	hypothetical protein	NA	NA	NA	NA	NA
AXU27215.1|1417943_1419305_+|head	phage minor head protein	head	A0A0A8WJ84	Clostridium_phage	80.3	9.1e-188
AXU27216.1|1419307_1419469_+	hypothetical protein	NA	Q7Y4I8	Streptococcus_phage	57.7	1.5e-09
AXU27217.1|1419540_1419735_+	hypothetical protein	NA	A0A090DCN1	Clostridium_phage	89.1	7.4e-19
AXU27218.1|1419776_1420007_+	hypothetical protein	NA	A0A090EUB5	Clostridium_phage	94.6	1.7e-33
AXU27219.1|1420047_1420611_+	phage scaffold protein	NA	A0A0A8WFU8	Clostridium_phage	98.4	3.2e-86
AXU27220.1|1420622_1421522_+|capsid	phage major capsid protein	capsid	X5J9Z5	Clostridium_phage	92.3	7.2e-157
AXU27221.1|1421521_1421815_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	89.5	1.4e-21
AXU27222.1|1421824_1422226_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	93.2	9.8e-66
AXU27223.1|1422219_1422582_+	phage protein	NA	X5JAV9	Clostridium_phage	89.2	1.6e-51
AXU27224.1|1422581_1423007_+	phage protein	NA	A0A0A8WFV8	Clostridium_phage	96.5	2.3e-73
AXU27225.1|1422999_1423437_+	phage protein	NA	X5JAB5	Clostridium_phage	93.1	4.3e-75
AXU27226.1|1423420_1423606_+	hypothetical protein	NA	A0A0A8WFD8	Clostridium_phage	93.1	2.0e-21
AXU27227.1|1423606_1424917_+	phage protein	NA	X5JAJ1	Clostridium_phage	92.0	1.7e-231
AXU27228.1|1424933_1425404_+	phage protein	NA	A0A0A8WJ62	Clostridium_phage	81.4	1.7e-69
AXU27229.1|1425473_1425914_+	phage protein	NA	X5JAB6	Clostridium_phage	63.0	1.1e-46
AXU27230.1|1425988_1426108_+	phage protein	NA	NA	NA	NA	NA
AXU27231.1|1426254_1426416_+	hypothetical protein	NA	A0A0A8WFE0	Clostridium_phage	98.1	3.8e-21
AXU27232.1|1427879_1428062_+	hypothetical protein	NA	NA	NA	NA	NA
AXU27233.1|1428182_1428995_+	prophage antirepressor-related protein	NA	X5JAW1	Clostridium_phage	75.9	1.6e-86
AXU27234.1|1429049_1429217_+	hypothetical protein	NA	NA	NA	NA	NA
AXU27235.1|1429338_1430112_+	hypothetical protein	NA	X5JB37	Clostridium_phage	75.5	7.9e-96
AXU27236.1|1430169_1432458_+|tail	phage tail tape measure protein	tail	X5JAB7	Clostridium_phage	64.5	2.0e-259
AXU27237.1|1432473_1433175_+	phage cell wall hydrolase	NA	A0A0A8WFE5	Clostridium_phage	92.3	9.3e-120
AXU27238.1|1433167_1435060_+	phage cell wall hydrolase	NA	X5JAJ3	Clostridium_phage	92.2	0.0e+00
AXU27239.1|1435073_1435334_+	phage protein	NA	A0A0A8WJ65	Clostridium_phage	96.5	1.9e-38
AXU27240.1|1435338_1435758_+	phage protein	NA	A0A0A8WFW6	Clostridium_phage	96.4	1.9e-72
AXU27241.1|1435757_1436807_+	phage protein	NA	A0A0A8WFK0	Clostridium_phage	94.0	3.6e-184
AXU27242.1|1436799_1437417_+	phage protein	NA	A0A0A8WFE8	Clostridium_phage	95.6	2.2e-112
AXU27243.1|1437428_1438232_+|tail	phage tail fiber protein	tail	X5JAJ4	Clostridium_phage	96.6	1.7e-125
AXU27244.1|1438246_1439737_+	Glycine rich protein	NA	A0A2R2ZGJ5	Clostridioides_phage	68.5	1.9e-178
AXU27245.1|1439892_1440186_+	hypothetical protein	NA	J9QEB9	Clostridium_phage	88.7	5.5e-42
AXU27246.1|1440185_1440368_+	hypothetical protein	NA	J9QDY8	Clostridium_phage	93.3	1.2e-23
AXU27247.1|1440408_1440639_+	Hemolysin XhlA	NA	A0A0K2SUG6	Clostridium_phage	97.4	2.4e-32
AXU27248.1|1440654_1440912_+	phage membrane protein	NA	A0A0A8WJ67	Clostridium_phage	95.3	3.5e-40
AXU27249.1|1441041_1441707_+	phage-related cell wall hydrolase	NA	A0A0A8WIC2	Clostridium_phage	91.5	5.5e-114
AXU27250.1|1441864_1442509_-	hypothetical protein	NA	NA	NA	NA	NA
AXU27251.1|1442592_1443294_-	hypothetical protein	NA	NA	NA	NA	NA
AXU27252.1|1443688_1444888_-	Cna B-type domain-containing protein	NA	NA	NA	NA	NA
AXU27253.1|1444918_1445515_-	Cna B-type domain-containing protein	NA	NA	NA	NA	NA
AXU27254.1|1445543_1446116_-	Cna B-type domain-containing protein	NA	NA	NA	NA	NA
AXU27255.1|1446303_1446906_+	Cna B-type domain-containing protein	NA	NA	NA	NA	NA
AXU27256.1|1447047_1447818_+	hypothetical protein	NA	NA	NA	NA	NA
AXU27257.1|1448011_1448215_+|transposase	Putative transposase DNA-binding domain protein	transposase	NA	NA	NA	NA
>prophage 8
CP020378	Clostridioides difficile strain DSM 102859 chromosome, complete genome	4247015	1511154	1520829	4247015	transposase	Geobacillus_virus(16.67%)	11	NA	NA
AXU27319.1|1511154_1512264_+|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	54.1	1.1e-111
AXU27320.1|1512415_1512955_+	segregation and condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	37.0	1.6e-18
AXU27321.1|1513116_1513746_+	hypothetical protein	NA	NA	NA	NA	NA
AXU27322.1|1513699_1514128_+	sporulation protein YtfJ	NA	NA	NA	NA	NA
AXU27323.1|1514375_1514816_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXU27324.1|1514831_1516283_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	39.1	2.2e-54
AXU27325.1|1516373_1517042_-	putative integral membrane protein	NA	NA	NA	NA	NA
AXU27326.1|1517310_1517451_+	hypothetical protein	NA	B6SBZ7	Clostridium_virus	53.7	1.5e-05
AXU27327.1|1517625_1517946_-	pyrophosphohydrolase	NA	NA	NA	NA	NA
AXU27328.1|1518065_1518803_-	NAD-dependent deacetylase	NA	S5M4R0	Bacillus_phage	32.9	2.0e-27
AXU27329.1|1519017_1520829_+	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA	Q4ZE13	Staphylococcus_virus	37.3	2.7e-22
>prophage 9
CP020378	Clostridioides difficile strain DSM 102859 chromosome, complete genome	4247015	1575151	1599467	4247015	tail	Clostridium_phage(54.55%)	29	NA	NA
AXU27376.1|1575151_1575352_+	cold shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AXU27377.1|1575772_1576201_+	regulatory protein	NA	NA	NA	NA	NA
AXU27378.1|1576343_1577099_-	peptidyl-prolyl isomerase	NA	NA	NA	NA	NA
AXU27379.1|1577219_1577636_-	hypothetical protein	NA	NA	NA	NA	NA
AXU27380.1|1577799_1578306_-	phage protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
AXU27381.1|1578387_1578708_-	phage repressor	NA	A0A0A8WE28	Clostridium_phage	54.5	2.8e-23
AXU27382.1|1578876_1579098_+	phage regulatory protein	NA	NA	NA	NA	NA
AXU27383.1|1579176_1579617_+	DNA-binding protein	NA	A0A090EUN5	Clostridium_phage	51.4	4.6e-32
AXU27384.1|1579865_1580309_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.1	5.9e-19
AXU27385.1|1580313_1581378_+	phage-like element pbsx protein xkdK	NA	A0A1V0DZX4	Clostridioides_phage	52.6	7.6e-97
AXU27386.1|1581391_1581820_+	phage-like element pbsx protein XkdM	NA	A0A1V0DZX1	Clostridioides_phage	51.8	3.6e-34
AXU27387.1|1581933_1582380_+	Phage XkdN-like protein	NA	A0A090EUD0	Clostridium_phage	36.0	6.3e-13
AXU27388.1|1582406_1582574_+	hypothetical protein	NA	NA	NA	NA	NA
AXU27389.1|1582573_1584973_+	phage protein	NA	A0A1V0DZX3	Clostridioides_phage	46.4	2.9e-19
AXU27390.1|1584972_1585395_+	phage-like element pbsx protein xkdP	NA	A0A090DBR9	Clostridium_phage	71.1	1.7e-52
AXU27391.1|1585676_1587206_+	phage cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.4	9.1e-245
AXU27392.1|1587221_1587548_+	hypothetical protein	NA	J9QE86	Clostridium_phage	93.5	2.9e-52
AXU27393.1|1587547_1587976_+	phage protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
AXU27394.1|1587968_1589021_+	phage protein	NA	A0A0A8WFP3	Clostridium_phage	70.4	1.0e-138
AXU27395.1|1589017_1589716_+	phage protein	NA	A0A090D815	Clostridium_phage	56.9	5.5e-48
AXU27396.1|1589716_1590703_+|tail	phage tail fiber protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.4	1.7e-58
AXU27397.1|1590724_1595902_+	RCC1 domain-containing protein, alpha-tubulin suppressor	NA	A0A0A8WEY5	Clostridium_phage	27.3	8.5e-85
AXU27398.1|1595918_1596272_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	7.2e-12
AXU27399.1|1596534_1596795_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AXU27400.1|1597003_1597459_-	hypothetical protein	NA	NA	NA	NA	NA
AXU27401.1|1597686_1598106_-	phage regulatory protein	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
AXU27402.1|1598401_1598611_+	phage regulatory protein	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AXU27403.1|1598642_1598852_+	hypothetical protein	NA	NA	NA	NA	NA
AXU27404.1|1599068_1599467_-	phage regulatory protein	NA	A0A1L2JY18	Aeribacillus_phage	30.4	9.3e-08
>prophage 10
CP020378	Clostridioides difficile strain DSM 102859 chromosome, complete genome	4247015	1678422	1688151	4247015		Pandoravirus(37.5%)	11	NA	NA
AXU27471.1|1678422_1679007_+	para-aminobenzoate synthase glutamine amidotransferase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	53.2	1.1e-57
AXU27472.1|1679008_1680358_+	para-aminobenzoate synthase component I	NA	S4VNU7	Pandoravirus	41.2	2.2e-37
AXU27473.1|1680347_1681091_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AXU27474.1|1681124_1681826_+	hypothetical protein	NA	NA	NA	NA	NA
AXU27475.1|1681851_1682424_+	GTP cyclohydrolase I	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
AXU27476.1|1682489_1683281_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	28.8	1.4e-23
AXU27477.1|1683291_1683657_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AXU27478.1|1683649_1684156_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	NA	S4VNV0	Pandoravirus	35.9	1.2e-12
AXU27479.1|1684136_1684922_+	chorismate biosynthesis-like protein	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.7e-13
AXU27480.1|1685176_1686967_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
AXU27481.1|1686984_1688151_+	RNA polymerase sigma factor (sigma-43)	NA	M4SMP8	Cyanophage	36.8	9.6e-37
>prophage 11
CP020378	Clostridioides difficile strain DSM 102859 chromosome, complete genome	4247015	2139531	2147262	4247015	transposase	Clostridium_phage(42.86%)	9	NA	NA
AXU27880.1|2139531_2140320_-	phage-related cell wall hydrolase	NA	A0A0A8WE15	Clostridium_phage	61.6	1.6e-88
AXU27881.1|2140458_2140896_-	phage-related deoxycytidylate deaminase	NA	A7KUY9	Bacillus_phage	54.3	5.9e-32
AXU27882.1|2141129_2141264_-	hypothetical protein	NA	B6SBZ7	Clostridium_virus	78.0	6.2e-09
AXU27883.1|2141732_2142134_+|transposase	transposase	transposase	Q332K6	Clostridium_botulinum_C_phage	74.4	1.5e-53
AXU27884.1|2142151_2142427_+|transposase	putative IS transposase	transposase	A0A0A8WJI7	Clostridium_phage	86.8	4.1e-39
AXU27885.1|2142783_2143293_+	phage repressor	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	43.8	1.0e-06
AXU27886.1|2143708_2144245_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AXU27887.1|2144668_2145469_-	ABC transporter permease	NA	NA	NA	NA	NA
AXU27888.1|2145663_2147262_-	site-specific recombinase	NA	A0A1L2BY67	Clostridium_phage	44.2	4.6e-114
>prophage 12
CP020378	Clostridioides difficile strain DSM 102859 chromosome, complete genome	4247015	2633342	2640988	4247015	integrase	Bacillus_phage(50.0%)	9	2628221:2628234	2643630:2643643
2628221:2628234	attL	ATATCATAAAGATA	NA	NA	NA	NA
AXU28308.1|2633342_2633765_+	conjugative transposon protein	NA	A0A1S5SEW0	Streptococcus_phage	35.0	2.4e-14
AXU28309.1|2633761_2634013_+	conjugative transposon protein	NA	NA	NA	NA	NA
AXU28310.1|2634428_2634665_+	hypothetical protein	NA	NA	NA	NA	NA
AXU28311.1|2634668_2635973_+|integrase	phage integrase	integrase	A0A1B0T6A8	Bacillus_phage	25.8	5.0e-18
AXU28312.1|2636243_2636495_+	putative membrane protein	NA	NA	NA	NA	NA
AXU28313.1|2636700_2638761_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	25.5	7.4e-16
AXU28314.1|2638956_2639649_-	two-component system response regulator	NA	W8CYM9	Bacillus_phage	33.2	5.3e-35
AXU28315.1|2640278_2640506_-	regulatory protein	NA	A0A0A8WFF9	Clostridium_phage	78.7	1.1e-26
AXU28316.1|2640610_2640988_-	regulatory protein	NA	A0A0A8WJU1	Clostridium_phage	92.0	1.7e-56
2643630:2643643	attR	ATATCATAAAGATA	NA	NA	NA	NA
>prophage 13
CP020378	Clostridioides difficile strain DSM 102859 chromosome, complete genome	4247015	3083132	3140111	4247015	plate,portal,integrase,tail,terminase	Clostridium_phage(67.12%)	86	3077935:3077952	3146201:3146218
3077935:3077952	attL	TAATTTTTCTAAATCTTT	NA	NA	NA	NA
AXU28701.1|3083132_3083516_-	regulatory protein	NA	A0A090DCS9	Clostridium_phage	94.5	2.1e-65
AXU28702.1|3083629_3083848_-	Helix-turn-helix protein	NA	NA	NA	NA	NA
AXU28703.1|3084008_3084431_+	hypothetical protein	NA	NA	NA	NA	NA
AXU28704.1|3084443_3084644_+	hypothetical protein	NA	NA	NA	NA	NA
AXU28705.1|3084822_3085695_-	hypothetical protein	NA	NA	NA	NA	NA
AXU28706.1|3085891_3086476_-	hypothetical protein	NA	A0A0A8WFF4	Clostridium_phage	100.0	1.0e-42
AXU28707.1|3086478_3086970_-	hypothetical protein	NA	A0A0A8WJU0	Clostridium_phage	100.0	3.0e-88
AXU28708.1|3087219_3088026_-	phage-related cell wall hydrolase	NA	A0A0A8WIC2	Clostridium_phage	93.7	1.2e-147
AXU28709.1|3088025_3088283_-	phage membrane protein	NA	A0A0A8WJ67	Clostridium_phage	94.1	4.5e-40
AXU28710.1|3088298_3088529_-	Hemolysin XhlA	NA	Q24LG5	Clostridium_phage	100.0	9.7e-34
AXU28711.1|3088699_3088999_-	phage protein	NA	J9QDX4	Clostridium_phage	100.0	2.4e-48
AXU28712.1|3088995_3090228_-	hypothetical protein	NA	B6SBV3	Clostridium_virus	98.0	8.1e-228
AXU28713.1|3090260_3090443_-	hypothetical protein	NA	J9QE73	Clostridium_phage	100.0	2.9e-25
AXU28714.1|3090442_3090736_-	hypothetical protein	NA	J9QEB9	Clostridium_phage	100.0	3.4e-47
AXU28715.1|3090752_3092435_-	Glycine rich protein	NA	J9QD15	Clostridium_phage	100.0	4.2e-291
AXU28716.1|3092449_3093067_-|tail	phage tail fiber protein	tail	B6SBU9	Clostridium_virus	72.8	1.2e-65
AXU28717.1|3093078_3093459_-	hypothetical protein	NA	B6SBU8	Clostridium_virus	98.4	1.0e-64
AXU28718.1|3093459_3094230_-	XkdU related phage protein	NA	B6SBU7	Clostridium_virus	94.1	8.6e-135
AXU28719.1|3094226_3095363_-|plate	putative baseplate J-like protein	plate	J9QE72	Clostridium_phage	93.6	2.5e-199
AXU28720.1|3095367_3095829_-	XkdS-like protein	NA	J9QEB8	Clostridium_phage	91.4	1.2e-75
AXU28721.1|3095803_3096169_-	hypothetical protein	NA	B6SBU4	Clostridium_virus	95.0	3.1e-58
AXU28722.1|3096161_3097124_-	XkdQ-like protein	NA	B6SBU3	Clostridium_virus	97.2	2.1e-170
AXU28723.1|3097120_3097792_-	SH3 type 3 domain-containing protein	NA	B6SBU2	Clostridium_virus	96.0	6.4e-118
AXU28724.1|3099643_3100564_-	hypothetical protein	NA	X5JB37	Clostridium_phage	38.1	3.0e-09
AXU28725.1|3100644_3103911_-|tail	TP901 family phage tail tape measure protein	tail	A0A0A8WJN8	Clostridium_phage	79.6	1.0e-213
AXU28726.1|3104158_3105256_-|tail	TP901 family phage tail tape measure protein	tail	A0A0A8WJN8	Clostridium_phage	99.1	2.1e-78
AXU28727.1|3105436_3105910_-	Phage XkdN-like protein	NA	A0A0A8WFG0	Clostridium_phage	98.7	7.3e-76
AXU28728.1|3105986_3106409_-	XkdM-like protein	NA	B6SBT8	Clostridium_virus	96.4	2.3e-73
AXU28729.1|3106423_3107845_-|tail	putative tail sheath protein	tail	J9QE70	Clostridium_phage	94.9	2.7e-259
AXU28730.1|3107846_3108050_-	hypothetical protein	NA	B6SBT6	Clostridium_virus	95.5	1.7e-26
AXU28731.1|3108062_3108887_-	hypothetical protein	NA	B6SBT5	Clostridium_virus	79.2	5.6e-124
AXU28732.1|3108888_3109299_-	hypothetical protein	NA	B6SBT4	Clostridium_virus	58.5	2.7e-42
AXU28733.1|3109311_3109695_-	hypothetical protein	NA	A0A2H4J057	uncultured_Caudovirales_phage	46.5	1.1e-21
AXU28734.1|3109691_3110009_-	hypothetical protein	NA	A0A2H4J040	uncultured_Caudovirales_phage	69.0	6.6e-33
AXU28735.1|3110011_3110218_-	hypothetical protein	NA	A0A0A7RTZ2	Clostridium_phage	50.0	2.8e-08
AXU28736.1|3110235_3111264_-	phage protein	NA	A0A1J1GG50	Clostridium_phage	100.0	1.0e-191
AXU28737.1|3111287_3111644_-	hypothetical protein	NA	A0A2H4J872	uncultured_Caudovirales_phage	72.9	3.0e-42
AXU28738.1|3111655_3112309_-	phage-like protein	NA	I1TLE1	Bacillus_phage	42.2	4.4e-07
AXU28739.1|3112376_3112529_-	hypothetical protein	NA	NA	NA	NA	NA
AXU28740.1|3112530_3114150_-	hypothetical protein	NA	A0A2H4J048	uncultured_Caudovirales_phage	41.6	3.2e-70
AXU28741.1|3114162_3115686_-|portal	SPP1 Gp6-like phage portal protein	portal	A0A0A7RW62	Clostridium_phage	64.9	2.5e-186
AXU28742.1|3115685_3117041_-|terminase	phage terminase large subunit	terminase	A0A1L2JY46	Aeribacillus_phage	65.9	2.0e-163
AXU28743.1|3117027_3117792_-	phage DNA-binding protein	NA	A0A0A8WFS6	Clostridium_phage	88.9	1.1e-102
AXU28744.1|3117829_3118087_-	hypothetical protein	NA	NA	NA	NA	NA
AXU28745.1|3118163_3118775_-	phage protein	NA	A0A0A8WFI2	Clostridium_phage	100.0	6.9e-111
AXU28746.1|3118774_3118948_-	hypothetical protein	NA	A0A0A8WJV0	Clostridium_phage	100.0	5.8e-23
AXU28747.1|3119691_3120180_-	DNA-binding protein	NA	A0A0A8WIL5	Clostridium_phage	99.4	6.1e-86
AXU28748.1|3120273_3120999_-	phage anti-repressor	NA	X5JAX3	Clostridium_phage	100.0	7.9e-130
AXU28749.1|3121013_3121421_-	phage protein	NA	A0A090D860	Clostridium_phage	100.0	8.7e-70
AXU28750.1|3121546_3121885_-	peptide chain release factor 1	NA	A0A090D894	Clostridium_phage	100.0	5.8e-59
AXU28751.1|3121978_3122143_-	hypothetical protein	NA	A0A090DC09	Clostridium_phage	98.1	5.8e-25
AXU28752.1|3122160_3122331_-	hypothetical protein	NA	A0A090DC09	Clostridium_phage	100.0	1.4e-21
AXU28753.1|3122327_3122495_-	hypothetical protein	NA	A0A090EUN3	Clostridium_phage	100.0	7.0e-26
AXU28754.1|3122514_3122805_-	hypothetical protein	NA	A0A090DCY6	Clostridium_phage	100.0	2.1e-46
AXU28755.1|3122815_3123820_-	phage protein	NA	A0A090D855	Clostridium_phage	100.0	4.8e-186
AXU28756.1|3123816_3124038_-	hypothetical protein	NA	A0A090D884	Clostridium_phage	100.0	1.9e-34
AXU28757.1|3124114_3125188_-	DNA methylase	NA	A0A0A8WFL3	Clostridium_phage	99.7	1.0e-210
AXU28758.1|3125283_3125559_-	hypothetical protein	NA	X5JAX1	Clostridium_phage	100.0	1.1e-44
AXU28759.1|3125610_3125769_-	hypothetical protein	NA	NA	NA	NA	NA
AXU28760.1|3125771_3125888_-	hypothetical protein	NA	A0A0A8WI97	Clostridium_phage	86.8	4.4e-11
AXU28761.1|3125871_3126321_-	YopX protein	NA	A0A0A8WF29	Clostridium_phage	61.5	7.9e-48
AXU28762.1|3126307_3126457_-	hypothetical protein	NA	A0A0A8WJQ3	Clostridium_phage	81.6	7.2e-14
AXU28763.1|3126798_3127050_-	hypothetical protein	NA	J9QD22	Clostridium_phage	85.5	2.0e-32
AXU28764.1|3127052_3127451_-	YopX protein	NA	A0A0A8WFY4	Clostridium_phage	71.7	1.5e-42
AXU28765.1|3127525_3127780_-	hypothetical protein	NA	Q24LE4	Clostridium_phage	100.0	5.5e-46
AXU28766.1|3127850_3128684_-	phage protein	NA	A0A0A8WI94	Clostridium_phage	59.9	2.5e-79
AXU28767.1|3128696_3129599_-	phage recombination protein	NA	A8ATK8	Listeria_phage	43.4	5.5e-40
AXU28768.1|3129600_3130116_-	phage protein	NA	A0A0A8WJQ2	Clostridium_phage	94.1	5.3e-80
AXU28769.1|3130200_3130518_-	hypothetical protein	NA	J9QE26	Clostridium_phage	95.2	1.1e-43
AXU28770.1|3130531_3130759_-	hypothetical protein	NA	NA	NA	NA	NA
AXU28771.1|3130860_3131217_-	phage DNA-binding protein	NA	Q24LE9	Clostridium_phage	83.1	3.5e-46
AXU28772.1|3131206_3131404_-	phage regulatory protein	NA	A0A0A8WE47	Clostridium_phage	78.5	9.5e-22
AXU28773.1|3131480_3131720_+	hypothetical protein	NA	NA	NA	NA	NA
AXU28774.1|3131676_3131934_-	hypothetical protein	NA	NA	NA	NA	NA
AXU28775.1|3131997_3132789_-	phage anti-repressor	NA	X5JAW6	Clostridium_phage	87.1	5.4e-124
AXU28776.1|3132825_3133029_-	Helix-turn-helix protein	NA	A8ATX6	Listeria_phage	55.6	2.9e-13
AXU28777.1|3133194_3133569_+	phage regulatory protein	NA	A0A142LP08	Marinitoga_camini_virus	39.8	6.3e-06
AXU28778.1|3133606_3133924_+	transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	57.1	3.2e-11
AXU28779.1|3133965_3134094_-	hypothetical protein	NA	NA	NA	NA	NA
AXU28780.1|3134507_3135410_-	hypothetical protein	NA	NA	NA	NA	NA
AXU28781.1|3135418_3135865_-	putative zinc finger/helix-turn-helix protein, YgiT family	NA	I6R0L8	Salmonella_phage	43.8	4.7e-24
AXU28782.1|3136625_3136823_+	YcfA-like protein	NA	A0A1L2JY37	Aeribacillus_phage	63.5	7.5e-19
AXU28783.1|3136861_3137263_+	phage-like protein	NA	A0A090DBV2	Clostridium_phage	96.2	1.9e-69
AXU28784.1|3137331_3138450_+|integrase	phage integrase	integrase	A0A090EUH1	Clostridium_phage	94.6	6.3e-195
AXU28785.1|3138616_3139006_-	hypothetical protein	NA	NA	NA	NA	NA
AXU28786.1|3139109_3140111_-	asparagine synthetase AsnA	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	42.3	1.8e-60
3146201:3146218	attR	AAAGATTTAGAAAAATTA	NA	NA	NA	NA
>prophage 14
CP020378	Clostridioides difficile strain DSM 102859 chromosome, complete genome	4247015	3241743	3250696	4247015		Catovirus(50.0%)	8	NA	NA
AXU28861.1|3241743_3243657_-	capsular polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
AXU28862.1|3243740_3244832_-	capsular polysaccharide biosynthesis glycosyl transferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.0e-16
AXU28863.1|3244837_3246133_-	UDP-glucose 6-dehydrogenase	NA	A0A127AXI2	Bacillus_phage	43.6	2.2e-90
AXU28864.1|3246158_3246911_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
AXU28865.1|3246958_3247867_-	beta-glycosyltransferase	NA	NA	NA	NA	NA
AXU28866.1|3247888_3248638_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
AXU28867.1|3248666_3249842_-	minor teichoic acid biosynthesis protein	NA	NA	NA	NA	NA
AXU28868.1|3249856_3250696_-	glycosyl transferase	NA	A0A2P1ELT8	Moumouvirus	26.3	7.0e-05
>prophage 15
CP020378	Clostridioides difficile strain DSM 102859 chromosome, complete genome	4247015	3805010	3873696	4247015	plate,integrase,protease,tail	Clostridium_phage(50.0%)	70	3822728:3822746	3832286:3832304
AXU29324.1|3805010_3805898_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.9	5.1e-22
AXU29325.1|3806042_3807158_-	sensor protein	NA	W8CYF6	Bacillus_phage	29.0	5.1e-19
AXU29326.1|3807193_3807892_-	two component transcriptional regulator, winged helix family	NA	W8CYM9	Bacillus_phage	39.0	1.5e-37
AXU29327.1|3808480_3808864_-	regulatory protein	NA	A0A090DCS9	Clostridium_phage	92.9	5.2e-64
AXU29328.1|3809243_3809420_+	hypothetical protein	NA	NA	NA	NA	NA
AXU29329.1|3809918_3810767_+	hypothetical protein	NA	NA	NA	NA	NA
AXU29330.1|3811135_3811423_-	hypothetical protein	NA	Q24LG2	Clostridium_phage	76.1	6.0e-33
AXU29331.1|3811531_3812338_-	phage-related cell wall hydrolase	NA	A0A0A8WIC2	Clostridium_phage	91.8	1.4e-143
AXU29332.1|3812334_3812595_-	phage membrane protein	NA	A0A0A8WJ67	Clostridium_phage	94.1	1.0e-39
AXU29333.1|3812610_3812841_-	Hemolysin XhlA	NA	Q24LG5	Clostridium_phage	100.0	9.7e-34
AXU29334.1|3813010_3813310_-	phage protein	NA	J9QDX4	Clostridium_phage	91.9	6.0e-44
AXU29335.1|3813309_3814536_-	hypothetical protein	NA	A0A0A8WI81	Clostridium_phage	89.1	7.4e-205
AXU29336.1|3814568_3814751_-	hypothetical protein	NA	J9QE73	Clostridium_phage	100.0	2.9e-25
AXU29337.1|3814750_3815044_-	hypothetical protein	NA	J9QEB9	Clostridium_phage	96.9	5.3e-45
AXU29338.1|3815057_3816620_-	Glycine rich protein	NA	J9QD15	Clostridium_phage	52.8	2.6e-122
AXU29339.1|3816636_3817248_-|tail	phage tail fiber protein	tail	B6SBU9	Clostridium_virus	57.1	5.4e-39
AXU29340.1|3817259_3817640_-	hypothetical protein	NA	B6SBU8	Clostridium_virus	98.4	1.0e-64
AXU29341.1|3817641_3818412_-	XkdU related phage protein	NA	B6SBU7	Clostridium_virus	92.6	2.3e-132
AXU29342.1|3818408_3819542_-|plate	putative baseplate J-like protein	plate	B6SBU6	Clostridium_virus	92.8	8.1e-198
AXU29343.1|3819546_3820008_-	XkdS-like protein	NA	J9QEB8	Clostridium_phage	93.4	2.9e-77
AXU29344.1|3819982_3820348_-	hypothetical protein	NA	B6SBU4	Clostridium_virus	95.0	3.1e-58
AXU29345.1|3820340_3821303_-	XkdQ-like protein	NA	A0A0A8WIZ7	Clostridium_phage	95.3	2.1e-170
AXU29346.1|3821299_3821971_-	SH3 type 3 domain-containing protein	NA	J9QE19	Clostridium_phage	96.0	1.4e-117
AXU29347.1|3822310_3822469_-	hypothetical protein	NA	A0A1J1J916	Escherichia_phage	61.5	1.6e-08
AXU29348.1|3822643_3822847_-	hypothetical protein	NA	NA	NA	NA	NA
3822728:3822746	attL	TTCTTGAAACTTTTCTCCG	NA	NA	NA	NA
AXU29349.1|3822906_3823725_-	prophage antirepressor-related protein	NA	X5JAW1	Clostridium_phage	73.3	4.5e-89
AXU29350.1|3823850_3824027_-	hypothetical protein	NA	NA	NA	NA	NA
AXU29351.1|3825116_3825275_-	hypothetical protein	NA	J9QED5	Clostridium_phage	67.3	9.6e-09
AXU29352.1|3825493_3825895_+	phage-like protein	NA	A0A090DBV2	Clostridium_phage	94.7	3.6e-68
AXU29353.1|3825963_3827055_+|integrase	phage integrase	integrase	X5JB41	Clostridium_phage	77.6	9.6e-156
AXU29354.1|3827233_3827914_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	27.3	4.2e-16
AXU29355.1|3827963_3829979_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AXU29356.1|3830050_3830728_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.3	7.6e-26
AXU29357.1|3831622_3832465_-	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
3832286:3832304	attR	TTCTTGAAACTTTTCTCCG	NA	NA	NA	NA
AXU29358.1|3832716_3834501_-	endopeptidase	NA	NA	NA	NA	NA
AXU29359.1|3834566_3835232_-	cation transporter	NA	G3MA03	Bacillus_virus	43.2	8.5e-22
AXU29360.1|3835382_3835586_-	Spo0E like sporulation regulatory protein	NA	NA	NA	NA	NA
AXU29361.1|3835621_3836131_-	heptaprenyl diphosphate synthase component I	NA	NA	NA	NA	NA
AXU29362.1|3836336_3836555_+	ferrous iron transport protein A	NA	NA	NA	NA	NA
AXU29363.1|3836572_3838519_+	ferrous iron transport protein B	NA	NA	NA	NA	NA
AXU29364.1|3838677_3839733_-	phosphosugar isomerase	NA	NA	NA	NA	NA
AXU29365.1|3839780_3840581_-	PTS system transporter subunit IID	NA	NA	NA	NA	NA
AXU29366.1|3840573_3841365_-	PTS system transporter subunit IIC	NA	NA	NA	NA	NA
AXU29367.1|3841394_3841817_-	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
AXU29368.1|3841832_3842312_-	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
AXU29369.1|3842443_3845194_-	transcription antiterminator	NA	NA	NA	NA	NA
AXU29370.1|3845791_3846595_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	36.3	9.0e-34
AXU29371.1|3846898_3849268_-	formate acetyltransferase	NA	A0A2K8HKE5	Bacteriophage	45.3	2.8e-06
AXU29372.1|3849272_3850181_-	pyruvate formate-lyase 3 activating enzyme	NA	NA	NA	NA	NA
AXU29373.1|3850525_3851605_-|protease	protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	25.7	3.3e-15
AXU29374.1|3851760_3853110_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AXU29375.1|3853374_3855003_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
AXU29376.1|3855126_3856731_-	FAD-dependent dehydrogenase	NA	NA	NA	NA	NA
AXU29377.1|3856778_3857096_-	hypothetical protein	NA	NA	NA	NA	NA
AXU29378.1|3857100_3857466_-	hypothetical protein	NA	NA	NA	NA	NA
AXU29379.1|3857546_3858584_-	protein translocase	NA	NA	NA	NA	NA
AXU29380.1|3858836_3859421_-	hypothetical protein	NA	NA	NA	NA	NA
AXU29381.1|3859435_3859879_-	hypothetical protein	NA	NA	NA	NA	NA
AXU29382.1|3859879_3860752_-	fimbrial assembly protein	NA	NA	NA	NA	NA
AXU29383.1|3860804_3861155_-	type IV pilin	NA	NA	NA	NA	NA
AXU29384.1|3861208_3862294_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU29385.1|3862464_3863814_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU29386.1|3863836_3864517_-	membrane protein	NA	NA	NA	NA	NA
AXU29387.1|3864911_3865991_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
AXU29388.1|3866568_3867939_+	transporter	NA	NA	NA	NA	NA
AXU29389.1|3868203_3868815_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
AXU29390.1|3868804_3871168_-|protease	ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	44.4	2.4e-175
AXU29391.1|3871347_3871860_+	chromate transport protein	NA	NA	NA	NA	NA
AXU29392.1|3871847_3872375_+	chromate transport protein	NA	NA	NA	NA	NA
AXU29393.1|3872445_3873696_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.1	6.1e-146
