The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	4228964	206307	297681	4228964	protease,transposase,coat	Clostridium_phage(10.34%)	75	NA	NA
AXU77656.1|206307_207270_+|protease	membrane-associated CAAX amino terminal protease	protease	NA	NA	NA	NA
AXU77657.1|207368_208349_-|protease	membrane-associated caaX amino terminal protease	protease	NA	NA	NA	NA
AXU77658.1|209476_209944_+	glyoxalase	NA	NA	NA	NA	NA
AXU77659.1|211074_211737_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.3	1.3e-30
AXU77660.1|211745_214253_+	ABC transporter permease	NA	NA	NA	NA	NA
AXU77661.1|214653_214923_+	hypothetical protein	NA	NA	NA	NA	NA
AXU77662.1|215160_215847_+	two component transcriptional regulator, winged helix family	NA	W8CYM9	Bacillus_phage	30.2	5.0e-25
AXU77663.1|215857_217099_+	sensor protein	NA	W8CYF6	Bacillus_phage	29.1	7.1e-22
AXU77664.1|217169_217853_+	ABC transporter ATPase	NA	G9BWD6	Planktothrix_phage	39.3	4.8e-36
AXU77665.1|217849_220183_+	ABC transporter permease	NA	NA	NA	NA	NA
AXU77666.1|220272_220836_-	nucleic acid-binding protein	NA	NA	NA	NA	NA
AXU77667.1|220949_222299_-	amino acid transporter	NA	NA	NA	NA	NA
AXU77668.1|222335_223556_-	amidohydrolase/peptidase	NA	NA	NA	NA	NA
AXU77669.1|223923_225936_-	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
AXU77670.1|226406_227057_+	cyclic nucleotide-binding protein	NA	NA	NA	NA	NA
AXU77671.1|227196_228573_-	drug/sodium antiporter	NA	NA	NA	NA	NA
AXU77672.1|228588_230502_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	32.4	1.5e-63
AXU77673.1|230637_231270_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
AXU77674.1|231417_231948_+	formylmethanofuran dehydrogenase subunit E	NA	NA	NA	NA	NA
AXU77675.1|232123_232294_-	ferredoxin	NA	NA	NA	NA	NA
AXU77676.1|232578_233646_+	lipoprotein	NA	NA	NA	NA	NA
AXU77677.1|233815_235717_+	oxidoreductase, acetyl-CoA synthase subunit	NA	NA	NA	NA	NA
AXU77678.1|235697_236183_+	oxidoreductase, electron transfer subunit	NA	NA	NA	NA	NA
AXU77679.1|236157_237384_+	oxidoreductase, NAD/FAD binding subunit	NA	NA	NA	NA	NA
AXU77680.1|237522_238710_-	cyclopropane-fatty-acyl-phospholipid synthase	NA	A0A2I2L5L3	Orpheovirus	33.8	5.5e-48
AXU77681.1|238982_239807_+	ATP-binding protein	NA	NA	NA	NA	NA
AXU77682.1|239935_241201_+	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
AXU77683.1|241512_242004_+|protease	membrane-associated metalloprotease	protease	NA	NA	NA	NA
AXU77684.1|242334_243468_+|protease	membrane-associated metalloprotease	protease	NA	NA	NA	NA
AXU77685.1|244382_245381_+	cell wall hydrolase	NA	A0A0A8WF62	Clostridium_phage	55.8	4.2e-33
AXU77686.1|245676_246597_+	aspartate carbamoyltransferase catalytic chain	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	42.5	7.1e-59
AXU77687.1|246635_247328_+	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA	NA
AXU77688.1|247320_248223_+	dihydroorotate dehydrogenase 1B	NA	NA	NA	NA	NA
AXU77689.1|248307_248892_+	orotate phosphoribosyltransferase	NA	Q58MW1	Prochlorococcus_phage	28.1	2.2e-05
AXU77690.1|249106_250033_+	ketopantoate reductase	NA	NA	NA	NA	NA
AXU77691.1|250084_250975_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXU77692.1|251162_252194_+	membrane protein	NA	NA	NA	NA	NA
AXU77693.1|252487_253363_+	DNA glycosylase	NA	NA	NA	NA	NA
AXU77694.1|253380_254871_+	cardiolipin synthetase	NA	NA	NA	NA	NA
AXU77695.1|255063_255348_+	10 kDa chaperonin	NA	A0A221S4A8	uncultured_virus	42.6	1.4e-13
AXU77696.1|255380_257009_+	60 kDa chaperonin	NA	A0A240F779	uncultured_virus	55.7	5.8e-157
AXU77697.1|257270_258011_+	NCAIR mutase-like protein	NA	A0A288TYA6	Enterococcus_phage	44.8	4.0e-20
AXU77698.1|258094_258829_+	hypothetical protein	NA	NA	NA	NA	NA
AXU77699.1|258858_259278_+	hypothetical protein	NA	NA	NA	NA	NA
AXU77700.1|259659_261195_+	GMP synthase	NA	A0A1V0SH76	Hokovirus	33.7	1.2e-23
AXU77701.1|261733_263164_+	membrane-associated nucleotidase	NA	NA	NA	NA	NA
AXU77702.1|263311_264187_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXU77703.1|264306_264870_+	chromate transport protein ChrA	NA	NA	NA	NA	NA
AXU77704.1|264866_265433_+	chromate transporter	NA	NA	NA	NA	NA
AXU77705.1|266085_269514_-	DNA repair protein	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	37.4	1.1e-176
AXU77706.1|269832_272067_+	signaling protein	NA	NA	NA	NA	NA
AXU77707.1|272322_274353_+	transcription antiterminator	NA	NA	NA	NA	NA
AXU77708.1|274349_274802_+	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
AXU77709.1|274803_275859_+	fructose-like permease EIIC subunit 2	NA	NA	NA	NA	NA
AXU77710.1|275925_276234_+	PTS system fructose-like transporter subunit EIIB	NA	NA	NA	NA	NA
AXU77711.1|276337_277603_+	sugar-phosphate kinase	NA	NA	NA	NA	NA
AXU77712.1|277690_278407_+	hydrolase	NA	NA	NA	NA	NA
AXU77713.1|278601_278895_-|coat	spore coat protein	coat	NA	NA	NA	NA
AXU77714.1|278900_279116_-	hypothetical protein	NA	NA	NA	NA	NA
AXU77715.1|279562_279961_+|transposase	transposase	transposase	A0A0A8WIU6	Clostridium_phage	96.2	2.5e-69
AXU77716.1|279957_281121_+|transposase	transposase	transposase	A0A0A8WI33	Clostridium_phage	98.7	5.0e-219
AXU77717.1|281504_282017_-	nitroreductase	NA	A0A1V0E011	Clostridioides_phage	88.2	1.6e-84
AXU77718.1|282466_282943_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
AXU77719.1|282948_283647_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AXU77720.1|283658_285026_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
AXU77721.1|285019_286096_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
AXU77722.1|286089_286683_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
AXU77723.1|286675_288208_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AXU77724.1|288218_289469_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AXU77725.1|289493_293300_+	formylglycinamidine ribonucleotide synthetase	NA	A6N228	Microbacterium_phage	24.5	1.0e-31
AXU77726.1|293505_294378_+	dtdp-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	1.7e-14
AXU77727.1|294486_295356_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	61.1	8.1e-97
AXU77728.1|295404_295962_+	dtdp-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.6	1.3e-47
AXU77729.1|295999_296983_+	dtdp-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.0	1.1e-78
AXU77730.1|297012_297681_+	transglycosylase	NA	A0A0H3V0Q1	Geobacillus_virus	46.9	4.1e-24
>prophage 2
CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	4228964	452172	464007	4228964	tRNA,integrase	Streptococcus_phage(37.5%)	12	441525:441538	459968:459981
441525:441538	attL	AGATATTAAAAAAG	NA	NA	NA	NA
AXU77882.1|452172_453528_+|tRNA	tRNA (Uracil-5-)-methyltransferase	tRNA	A0A2K5B251	Erysipelothrix_phage	34.1	1.5e-57
AXU77883.1|454049_455084_+	hypothetical protein	NA	NA	NA	NA	NA
AXU77884.1|455170_455374_+	tetratricopeptide repeat protein	NA	A0A0A8WIL0	Clostridium_phage	74.1	1.2e-14
AXU77885.1|455544_456705_+	cell surface protein	NA	A0A2R2ZGK6	Clostridioides_phage	47.6	8.6e-70
AXU77886.1|456987_458178_-|integrase	integrase	integrase	A0A1S5SEW7	Streptococcus_phage	67.0	3.1e-155
AXU77887.1|458256_458460_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	82.1	1.9e-25
AXU77888.1|458835_459075_-	conjugative transposon excisionase	NA	NA	NA	NA	NA
AXU77889.1|459067_459496_-	conjugative transposon protein	NA	A0A1S5SEW0	Streptococcus_phage	43.1	1.9e-22
AXU77890.1|459776_460001_-	hypothetical protein	NA	NA	NA	NA	NA
459968:459981	attR	CTTTTTTAATATCT	NA	NA	NA	NA
AXU77891.1|460127_461861_-	transporter	NA	W8CYL7	Bacillus_phage	29.7	7.1e-44
AXU77892.1|461947_462292_-	recombinase-like protein	NA	NA	NA	NA	NA
AXU77893.1|462306_464007_-	recombinase	NA	D2KRD2	Lactobacillus_phage	23.5	9.5e-17
>prophage 3
CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	4228964	488659	505739	4228964		Streptococcus_phage(83.33%)	17	NA	NA
AXU77912.1|488659_489571_-	conjugative transposon protein	NA	A0A1S5SF22	Streptococcus_phage	52.1	4.1e-83
AXU77913.1|489587_490595_-	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	68.8	3.1e-132
AXU77914.1|490591_492802_-	conjugative transposon protein	NA	A0A1S5SF30	Streptococcus_phage	59.9	1.6e-186
AXU77915.1|492801_495252_-	conjugative transposon protein	NA	A0A1S5SF64	Streptococcus_phage	76.1	0.0e+00
AXU77916.1|495229_495628_-	conjugative transposon protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	4.1e-48
AXU77917.1|495737_496241_-	conjugative transposon protein	NA	A0A1S5SF25	Streptococcus_phage	60.8	7.5e-55
AXU77918.1|496258_496762_-	conjugative tansposon protein	NA	NA	NA	NA	NA
AXU77919.1|497077_497551_-	N-acetyltransferase GCN5	NA	NA	NA	NA	NA
AXU77920.1|497955_499866_-	RNA-directed DNA polymerase	NA	A0A0U4J920	Pseudomonas_phage	29.4	6.4e-38
AXU77921.1|500607_500742_-	conjugative transposon protein	NA	NA	NA	NA	NA
AXU77922.1|500753_501950_-	conjugative transposon replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	62.8	4.3e-149
AXU77923.1|502194_502611_-	hypothetical protein	NA	NA	NA	NA	NA
AXU77924.1|502614_503997_-	conjugative transposon FtsK/SpoIIIE-like protein	NA	A0A1S5SFB5	Streptococcus_phage	66.7	2.0e-174
AXU77925.1|504097_504424_-	hypothetical protein	NA	NA	NA	NA	NA
AXU77926.1|504439_504847_-	DNA-binding protein	NA	A0A0A7AQV8	Bacillus_phage	42.3	2.6e-05
AXU77927.1|505013_505397_-	conjugative transposon protein	NA	A0A1S5SF96	Streptococcus_phage	55.9	2.3e-32
AXU77928.1|505412_505739_-	conjugative transposon protein	NA	A0A1S5SF38	Streptococcus_phage	51.5	2.0e-24
>prophage 4
CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	4228964	1151427	1204918	4228964	terminase,integrase,capsid,portal,tail	Clostridium_phage(92.94%)	85	1159031:1159049	1177709:1177727
AXU78461.1|1151427_1152594_-	prophage lambdaba04, site-specific recombinase	NA	A0A0A8WIF9	Clostridium_phage	100.0	2.8e-222
AXU78462.1|1152731_1152938_-	hypothetical protein	NA	A0A0A8WJ70	Clostridium_phage	100.0	1.5e-30
AXU78463.1|1152996_1153218_-	antitoxin HipB	NA	A0A0A8WFX6	Clostridium_phage	100.0	3.9e-32
AXU78464.1|1153675_1154053_-	helix-turn-helix domain-containing protein	NA	A0A0A8WJW3	Clostridium_phage	100.0	2.1e-62
AXU78465.1|1154249_1154483_+	BetR domain protein	NA	A0A0A8WFL5	Clostridium_phage	100.0	1.0e-35
AXU78466.1|1154482_1155271_+	phage anti-repressor	NA	A0A0A8WIJ5	Clostridium_phage	100.0	6.5e-138
AXU78467.1|1155327_1155465_+	hypothetical protein	NA	A0A0A8WJA6	Clostridium_phage	100.0	1.4e-16
AXU78468.1|1155476_1155644_-	Mnt	NA	A0A0A8WG21	Clostridium_phage	100.0	1.2e-22
AXU78469.1|1155766_1155943_+	hypothetical protein	NA	A0A0A8WJW4	Clostridium_phage	100.0	8.2e-25
AXU78470.1|1155935_1156574_+	prophage antirepressor	NA	A0A0A8WFM0	Clostridium_phage	100.0	7.2e-119
AXU78471.1|1156632_1157013_+	hypothetical protein	NA	A0A0A8WIJ9	Clostridium_phage	100.0	2.9e-67
AXU78472.1|1157213_1157411_+	phage regulatory protein	NA	A0A0A8WJU5	Clostridium_phage	100.0	7.3e-30
AXU78473.1|1157449_1157884_+	hypothetical protein	NA	A0A0A8WJW5	Clostridium_phage	100.0	8.1e-74
AXU78474.1|1158011_1158200_+	hypothetical protein	NA	A0A0A8WIK2	Clostridium_phage	100.0	2.7e-26
AXU78475.1|1158231_1158375_+	hypothetical protein	NA	A0A0A8WJB0	Clostridium_phage	100.0	1.8e-17
AXU78476.1|1158334_1158505_-	hypothetical protein	NA	A0A0A8WG27	Clostridium_phage	100.0	1.9e-23
AXU78477.1|1158647_1158806_+	Mnt	NA	A0A0A8WJW6	Clostridium_phage	100.0	7.6e-22
AXU78478.1|1158805_1159033_+	hypothetical protein	NA	A0A0A8WFM5	Clostridium_phage	100.0	3.5e-36
1159031:1159049	attL	TAGGAGGAAATAAAATGGC	NA	NA	NA	NA
AXU78479.1|1159130_1159445_+	hypothetical protein	NA	A0A0A8WIK4	Clostridium_phage	100.0	3.8e-49
AXU78480.1|1159528_1160038_+	phage protein	NA	A0A0A8WJB2	Clostridium_phage	100.0	4.6e-84
AXU78481.1|1160047_1160656_+	essential recombination function protein	NA	A0A0A8WG30	Clostridium_phage	100.0	3.9e-106
AXU78482.1|1160665_1161547_+	phage replication protein	NA	A0A0A8WJW8	Clostridium_phage	100.0	2.9e-150
AXU78483.1|1161607_1161781_+|integrase	phage resolvase/integrase	integrase	A0A0A8WFM7	Clostridium_phage	100.0	5.8e-23
AXU78484.1|1161796_1162204_+	phage single stranded DNA binding protein	NA	A0A0A8WIK6	Clostridium_phage	100.0	7.6e-74
AXU78485.1|1162277_1162781_+	hypothetical protein	NA	A0A0A8WJB4	Clostridium_phage	100.0	1.0e-91
AXU78486.1|1162794_1163160_+	hypothetical protein	NA	A0A0A8WG34	Clostridium_phage	100.0	2.9e-64
AXU78487.1|1163159_1163294_+	hypothetical protein	NA	A0A090DCW0	Clostridium_phage	100.0	1.8e-16
AXU78488.1|1163277_1163613_+	hypothetical protein	NA	A0A0A8WFN1	Clostridium_phage	100.0	5.9e-56
AXU78489.1|1163720_1164794_+	DNA methylase	NA	A0A0A8WIK9	Clostridium_phage	100.0	3.9e-210
AXU78490.1|1164873_1165083_+	hypothetical protein	NA	A0A0A8WJB6	Clostridium_phage	100.0	3.5e-30
AXU78491.1|1165094_1166099_+	phage protein	NA	A0A0A8WG36	Clostridium_phage	100.0	5.7e-187
AXU78492.1|1166180_1166510_+	hypothetical protein	NA	A0A0A8WI99	Clostridium_phage	100.0	6.2e-58
AXU78493.1|1166546_1166918_+	hypothetical protein	NA	A0A0A8WJ20	Clostridium_phage	100.0	8.2e-67
AXU78494.1|1166920_1167103_+	hypothetical protein	NA	A0A0A8WIL2	Clostridium_phage	100.0	1.6e-28
AXU78495.1|1167182_1167524_+	peptide chain release factor 1	NA	A0A0A8WJB8	Clostridium_phage	100.0	9.0e-60
AXU78496.1|1167649_1168057_+	phage protein	NA	A0A0A8WJX1	Clostridium_phage	100.0	1.5e-69
AXU78497.1|1168158_1169007_+	phage protein	NA	A0A0A8WFN9	Clostridium_phage	100.0	1.4e-154
AXU78498.1|1169109_1169598_+	DNA-binding protein	NA	A0A0A8WIL5	Clostridium_phage	100.0	4.7e-86
AXU78499.1|1170344_1170518_+	hypothetical protein	NA	A0A0A8WJV0	Clostridium_phage	100.0	5.8e-23
AXU78500.1|1170517_1171129_+	phage protein	NA	A0A0A8WFI2	Clostridium_phage	100.0	6.9e-111
AXU78501.1|1171205_1171394_+	hypothetical protein	NA	A0A0A8WIH0	Clostridium_phage	100.0	3.2e-27
AXU78502.1|1171373_1171691_-	phage protein	NA	A0A0A8WJ81	Clostridium_phage	100.0	5.2e-54
AXU78503.1|1171814_1172042_+	hypothetical protein	NA	A0A0A8WFZ2	Clostridium_phage	100.0	2.1e-36
AXU78504.1|1172111_1172804_+	phage DNA-binding protein	NA	A0A0A8WFS6	Clostridium_phage	100.0	1.0e-123
AXU78505.1|1172781_1174035_+|terminase	phage terminase large subunit	terminase	A0A0A8WFI5	Clostridium_phage	100.0	5.5e-248
AXU78506.1|1174040_1175480_+|portal	phage portal protein	portal	A3QS94	Clostridium_virus	100.0	6.3e-280
AXU78507.1|1175469_1176867_+	phage protein	NA	A0A0A8WJ84	Clostridium_phage	100.0	4.7e-272
AXU78508.1|1176881_1177082_+	hypothetical protein	NA	A0A0A8WJ56	Clostridium_phage	100.0	2.3e-31
AXU78509.1|1177147_1177711_+	phage scaffold protein	NA	A0A0A8WFU8	Clostridium_phage	100.0	4.9e-87
AXU78510.1|1177722_1178622_+|capsid	phage major capsid protein	capsid	A0A0A8WFI8	Clostridium_phage	100.0	2.8e-169
1177709:1177727	attR	TAGGAGGAAATAAAATGGC	NA	NA	NA	NA
AXU78511.1|1178621_1178855_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	100.0	2.2e-33
AXU78512.1|1178864_1179266_+	hypothetical protein	NA	A0A0A8WIE8	Clostridium_phage	100.0	2.3e-70
AXU78513.1|1179259_1179607_+	phage protein	NA	A0A0A8WFZ7	Clostridium_phage	100.0	3.8e-58
AXU78514.1|1179606_1180032_+	phage protein	NA	A0A0A8WFV8	Clostridium_phage	100.0	1.7e-76
AXU78515.1|1180024_1180462_+	phage protein	NA	A0A0A8WJT3	Clostridium_phage	100.0	2.9e-79
AXU78516.1|1180445_1180631_+	hypothetical protein	NA	A0A0A8WFD8	Clostridium_phage	98.3	5.6e-24
AXU78517.1|1180631_1181942_+	phage protein	NA	A0A0A8WIF0	Clostridium_phage	100.0	6.4e-247
AXU78518.1|1181963_1182434_+	phage protein	NA	A0A0A8WJ62	Clostridium_phage	100.0	2.1e-83
AXU78519.1|1182486_1182744_+	hypothetical protein	NA	A0A0A8WFW0	Clostridium_phage	100.0	2.9e-39
AXU78520.1|1182748_1183189_+	phage protein	NA	A0A0A8WJT4	Clostridium_phage	100.0	1.2e-77
AXU78521.1|1183819_1184053_+	hypothetical protein	NA	A0A0A8WIF1	Clostridium_phage	100.0	2.4e-40
AXU78522.1|1184112_1184640_+	Telomeric repeat-binding factor 2	NA	A0A0A8WJ63	Clostridium_phage	100.0	8.4e-65
AXU78523.1|1184781_1185342_+	phage protein	NA	A0A0A8WFW4	Clostridium_phage	100.0	9.4e-99
AXU78524.1|1185419_1187708_+|tail	phage tail tape measure protein	tail	A0A0A8WJT6	Clostridium_phage	100.0	0.0e+00
AXU78525.1|1187724_1188426_+	phage cell wall hydrolase	NA	A0A0A8WFE5	Clostridium_phage	100.0	1.3e-129
AXU78526.1|1188418_1190389_+	phage cell wall hydrolase	NA	A0A0A8WIF2	Clostridium_phage	100.0	0.0e+00
AXU78527.1|1190402_1190663_+	phage protein	NA	A3QSB4	Clostridium_virus	100.0	1.7e-39
AXU78528.1|1190667_1191087_+	phage protein	NA	A0A0A8WJV8	Clostridium_phage	100.0	7.9e-74
AXU78529.1|1191087_1192137_+	phage protein	NA	A0A0A8WFK0	Clostridium_phage	100.0	4.5e-195
AXU78530.1|1192129_1192747_+	phage protein	NA	A0A0A8WII4	Clostridium_phage	100.0	3.2e-116
AXU78531.1|1192758_1193781_+|tail	phage tail fiber protein	tail	A3QSB7	Clostridium_virus	97.3	7.9e-160
AXU78532.1|1193794_1195477_+	Glycine rich protein	NA	A0A2R2ZGJ5	Clostridioides_phage	65.2	1.3e-164
AXU78533.1|1195490_1195784_+	hypothetical protein	NA	J9QEB9	Clostridium_phage	96.9	2.4e-45
AXU78534.1|1195783_1195966_+	hypothetical protein	NA	J9QE73	Clostridium_phage	100.0	2.9e-25
AXU78535.1|1195998_1197234_+	hypothetical protein	NA	A0A0A8WI81	Clostridium_phage	99.5	4.2e-232
AXU78536.1|1197230_1197530_+	phage protein	NA	B6SBV4	Clostridium_virus	98.0	4.0e-48
AXU78537.1|1197730_1198162_+	cell wall hydrolase protein	NA	A0A090D848	Clostridium_phage	100.0	3.4e-72
AXU78538.1|1198161_1198974_+	N-acetylmuramoyl-l-alanine amidase	NA	A0A090D823	Clostridium_phage	100.0	7.2e-156
AXU78539.1|1199069_1199417_+	hypothetical protein	NA	A0A090DCS4	Clostridium_phage	100.0	1.3e-58
AXU78540.1|1199582_1200101_+	hypothetical protein	NA	A0A090EUG6	Clostridium_phage	100.0	3.2e-85
AXU78541.1|1200164_1201733_-	hypothetical protein	NA	A0A090DBU6	Clostridium_phage	100.0	7.8e-300
AXU78542.1|1201726_1202248_-	phage-like protein	NA	A0A090D850	Clostridium_phage	100.0	1.6e-95
AXU78543.1|1202949_1203138_-	phage-related DNA-directed RNA polymerase 7 kDa polypeptide	NA	A0A0A8WJ69	Clostridium_phage	100.0	3.1e-30
AXU78544.1|1204047_1204425_+	regulatory protein	NA	A0A0A8WJU1	Clostridium_phage	88.0	4.3e-55
AXU78545.1|1204534_1204918_+	regulatory protein	NA	A3QSD4	Clostridium_virus	100.0	1.7e-62
>prophage 5
CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	4228964	1472577	1497099	4228964	tail	Clostridium_phage(54.55%)	29	NA	NA
AXU78804.1|1472577_1472778_+	cold shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AXU78805.1|1473198_1473627_+	regulatory protein	NA	NA	NA	NA	NA
AXU78806.1|1473769_1474525_-	peptidyl-prolyl isomerase	NA	NA	NA	NA	NA
AXU78807.1|1474645_1475062_-	hypothetical protein	NA	NA	NA	NA	NA
AXU78808.1|1475225_1475732_-	phage protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
AXU78809.1|1475813_1476134_-	phage repressor	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
AXU78810.1|1476302_1476500_+	phage regulatory protein	NA	NA	NA	NA	NA
AXU78811.1|1476604_1477045_+	DNA-binding protein	NA	A0A090EUN5	Clostridium_phage	51.4	6.0e-32
AXU78812.1|1477293_1477737_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	35.4	1.3e-18
AXU78813.1|1477741_1478806_+	phage-like element pbsx protein xkdK	NA	A0A1V0DZX4	Clostridioides_phage	53.1	4.4e-97
AXU78814.1|1478819_1479248_+	phage-like element pbsx protein XkdM	NA	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
AXU78815.1|1479373_1479820_+	Phage XkdN-like protein	NA	A0A090EUD0	Clostridium_phage	36.0	6.3e-13
AXU78816.1|1479846_1480014_+	hypothetical protein	NA	NA	NA	NA	NA
AXU78817.1|1480013_1482467_+	phage protein	NA	A0A1V0DZX3	Clostridioides_phage	55.7	6.1e-17
AXU78818.1|1482466_1482889_+	phage-like element pbsx protein xkdP	NA	A0A090DBR9	Clostridium_phage	71.1	1.7e-52
AXU78819.1|1483170_1484700_+	phage cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
AXU78820.1|1484715_1485042_+	hypothetical protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
AXU78821.1|1485041_1485470_+	phage protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	4.4e-64
AXU78822.1|1485462_1486515_+	phage protein	NA	A0A0A8WFP3	Clostridium_phage	70.7	1.0e-138
AXU78823.1|1486511_1487210_+	phage protein	NA	A0A090D815	Clostridium_phage	56.9	5.5e-48
AXU78824.1|1487210_1488194_+|tail	phage tail fiber protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	47.8	8.3e-58
AXU78825.1|1488210_1493532_+	RCC1 domain-containing protein, alpha-tubulin suppressor	NA	A0A0A8WEY5	Clostridium_phage	37.5	1.0e-117
AXU78826.1|1493548_1493902_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	1.6e-11
AXU78827.1|1494164_1494425_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AXU78828.1|1494632_1495088_-	hypothetical protein	NA	NA	NA	NA	NA
AXU78829.1|1495315_1495735_-	phage regulatory protein	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
AXU78830.1|1496033_1496243_+	phage regulatory protein	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AXU78831.1|1496274_1496484_+	hypothetical protein	NA	NA	NA	NA	NA
AXU78832.1|1496700_1497099_-	phage regulatory protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 6
CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	4228964	1584422	1594149	4228964		Pandoravirus(37.5%)	11	NA	NA
AXU78909.1|1584422_1585007_+	para-aminobenzoate synthase glutamine amidotransferase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	1.4e-57
AXU78910.1|1585008_1586358_+	para-aminobenzoate synthase component I	NA	S4VNU7	Pandoravirus	41.2	2.2e-37
AXU78911.1|1586347_1587091_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AXU78912.1|1587124_1587826_+	hypothetical protein	NA	NA	NA	NA	NA
AXU78913.1|1587851_1588424_+	GTP cyclohydrolase I	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
AXU78914.1|1588487_1589279_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	28.5	2.4e-23
AXU78915.1|1589289_1589655_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AXU78916.1|1589647_1590154_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	NA	S4VNV0	Pandoravirus	35.9	9.4e-13
AXU78917.1|1590134_1590920_+	chorismate biosynthesis-like protein	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.7e-13
AXU78918.1|1591174_1592965_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
AXU78919.1|1592982_1594149_+	RNA polymerase sigma factor (sigma-43)	NA	M4SMP8	Cyanophage	36.8	9.6e-37
>prophage 7
CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	4228964	1719084	1776006	4228964	terminase,head,capsid,holin,portal,tail	Clostridium_phage(78.87%)	78	NA	NA
AXU79029.1|1719084_1720779_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.5	7.2e-49
AXU79030.1|1721137_1722268_-	prophage lambdaba04, site-specific recombinase	NA	A0A0A8WIE1	Clostridium_phage	99.5	5.6e-215
AXU79031.1|1722507_1723014_-	putative Zn peptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
AXU79032.1|1723276_1724866_-	hypothetical protein	NA	A0A1S5SA14	Streptococcus_phage	27.9	4.0e-33
AXU79033.1|1724889_1725453_-	phage repressor	NA	A0A0A8WE28	Clostridium_phage	58.2	3.9e-28
AXU79034.1|1725605_1725827_+	transcriptional regulator	NA	NA	NA	NA	NA
AXU79035.1|1725829_1726645_+	phage antirepressor protein	NA	A0A0A8WIE3	Clostridium_phage	99.4	5.3e-82
AXU79036.1|1726823_1727003_-	Mnt	NA	A0A0A8WG21	Clostridium_phage	70.9	1.9e-13
AXU79037.1|1727138_1727318_+	hypothetical protein	NA	A0A0A8WJW4	Clostridium_phage	58.2	9.9e-10
AXU79038.1|1727310_1728102_+	phage protein	NA	X5JAW6	Clostridium_phage	98.9	1.4e-143
AXU79039.1|1728534_1728753_-	helix-turn-helix domain-containing protein	NA	Q24LF2	Clostridium_phage	100.0	1.3e-32
AXU79040.1|1729101_1729896_+	phage anti-repressor	NA	Q24LF1	Clostridium_phage	83.6	7.6e-118
AXU79041.1|1729952_1730162_+	hypothetical protein	NA	NA	NA	NA	NA
AXU79042.1|1730171_1730546_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
AXU79043.1|1730621_1730819_+	phage regulatory protein	NA	A0A0A8WE47	Clostridium_phage	96.9	2.0e-27
AXU79044.1|1730849_1731242_+	hypothetical protein	NA	A0A0A8WHS2	Clostridium_phage	99.2	1.3e-62
AXU79045.1|1731222_1731372_+	hypothetical protein	NA	A0A0A8WIF8	Clostridium_phage	95.7	7.7e-16
AXU79046.1|1731538_1731781_+	hypothetical protein	NA	A0A0A8WEN0	Clostridium_phage	100.0	3.4e-37
AXU79047.1|1731859_1732141_+	hypothetical protein	NA	A0A0A8WJ80	Clostridium_phage	100.0	8.5e-48
AXU79048.1|1732127_1732766_+	phage essential recombination function protein	NA	A0A0A8WE55	Clostridium_phage	100.0	3.1e-114
AXU79049.1|1732775_1733672_+	phage replication protein	NA	A0A0A8WHS7	Clostridium_phage	95.3	4.8e-145
AXU79050.1|1733691_1734111_+	single-strand binding protein	NA	A0A0A8WIG9	Clostridium_phage	97.1	6.9e-70
AXU79051.1|1734139_1734502_+	hypothetical protein	NA	A0A0A8WEP3	Clostridium_phage	97.5	6.0e-62
AXU79052.1|1734501_1734636_+	hypothetical protein	NA	A0A0A8WJ82	Clostridium_phage	97.7	4.0e-16
AXU79053.1|1734619_1734739_+	hypothetical protein	NA	A0A0A8WI97	Clostridium_phage	91.7	3.5e-11
AXU79054.1|1734735_1735587_+	DNA-cytosine methyltransferase	NA	F4YCI6	Synechococcus_phage	43.9	9.8e-55
AXU79055.1|1735903_1736101_+	hypothetical protein	NA	A0A0A8WJU9	Clostridium_phage	93.8	7.5e-27
AXU79056.1|1736128_1736545_+	phage-like protein	NA	A0A0A8WFH8	Clostridium_phage	100.0	5.1e-73
AXU79057.1|1736563_1737064_+	putative sigma factor	NA	A0A0A8WIG7	Clostridium_phage	100.0	2.6e-84
AXU79058.1|1737485_1737692_+	hypothetical protein	NA	A0A0A8WFY8	Clostridium_phage	98.5	1.6e-32
AXU79059.1|1738180_1739368_+	hypothetical protein	NA	NA	NA	NA	NA
AXU79060.1|1739312_1739699_+	hypothetical protein	NA	NA	NA	NA	NA
AXU79061.1|1739703_1740474_+	hypothetical protein	NA	NA	NA	NA	NA
AXU79062.1|1740531_1741215_+	phage DNA-binding protein	NA	A0A0A8WFS6	Clostridium_phage	92.6	2.4e-112
AXU79063.1|1741192_1742446_+|terminase	phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	99.3	4.7e-247
AXU79064.1|1742454_1743891_+|portal	phage portal protein	portal	X5J9Z4	Clostridium_phage	98.5	1.3e-277
AXU79065.1|1743880_1745374_+|head	phage minor head protein	head	X5JAI9	Clostridium_phage	100.0	5.7e-292
AXU79066.1|1745339_1745582_+	hypothetical protein	NA	X5JAV8	Clostridium_phage	100.0	3.4e-37
AXU79067.1|1745652_1745847_+	hypothetical protein	NA	X5JB34	Clostridium_phage	100.0	5.3e-25
AXU79068.1|1745891_1746455_+	phage scaffold protein	NA	X5JAB4	Clostridium_phage	100.0	4.9e-87
AXU79069.1|1746466_1747366_+|capsid	phage major capsid protein	capsid	X5J9Z5	Clostridium_phage	99.3	4.0e-168
AXU79070.1|1747365_1747599_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	97.4	1.4e-32
AXU79071.1|1747608_1748010_+	hypothetical protein	NA	A0A0A8WIE8	Clostridium_phage	94.7	3.1e-67
AXU79072.1|1748003_1748366_+	phage protein	NA	X5JAV9	Clostridium_phage	80.8	1.6e-46
AXU79073.1|1748365_1748791_+	phage protein	NA	X5JB35	Clostridium_phage	97.9	9.4e-75
AXU79074.1|1748783_1749221_+	phage protein	NA	X5JAB5	Clostridium_phage	95.9	2.3e-76
AXU79075.1|1749204_1749390_+	hypothetical protein	NA	A0A0A8WFD8	Clostridium_phage	91.4	3.4e-21
AXU79076.1|1749390_1750701_+	phage protein	NA	X5JAJ1	Clostridium_phage	93.1	2.6e-232
AXU79077.1|1750717_1751188_+	phage protein	NA	A0A0A8WJ62	Clostridium_phage	82.1	7.0e-71
AXU79078.1|1751259_1751700_+	phage protein	NA	X5JAB6	Clostridium_phage	63.7	8.6e-47
AXU79079.1|1752542_1752647_+	hypothetical protein	NA	A0A090D809	Clostridium_phage	73.5	1.9e-05
AXU79080.1|1755445_1756315_+	prophage antirepressor-related protein	NA	X5JAW1	Clostridium_phage	81.0	7.0e-133
AXU79081.1|1756314_1756464_+	hypothetical protein	NA	NA	NA	NA	NA
AXU79082.1|1756593_1757370_+	hypothetical protein	NA	X5JB37	Clostridium_phage	44.4	9.9e-46
AXU79083.1|1757432_1759784_+|tail	phage tail tape measure protein	tail	X5JAB7	Clostridium_phage	67.7	2.2e-274
AXU79084.1|1759800_1760493_+	phage cell wall hydrolase	NA	X5J9Z8	Clostridium_phage	90.0	1.2e-111
AXU79085.1|1760485_1762378_+	phage cell wall hydrolase	NA	A3QSB3	Clostridium_virus	98.4	0.0e+00
AXU79086.1|1762391_1762652_+	phage protein	NA	A0A0A8WJ65	Clostridium_phage	87.2	4.9e-34
AXU79087.1|1762656_1763076_+	phage protein	NA	A0A0A8WJV8	Clostridium_phage	97.1	5.6e-72
AXU79088.1|1763076_1764126_+	phage protein	NA	A0A0A8WFK0	Clostridium_phage	95.7	3.1e-188
AXU79089.1|1764118_1764736_+	phage protein	NA	A0A0A8WFE8	Clostridium_phage	96.6	1.5e-113
AXU79090.1|1764747_1765740_+|tail	phage tail fiber protein	tail	A3QSB7	Clostridium_virus	94.4	4.1e-161
AXU79091.1|1765756_1767469_+	Glycine rich protein	NA	B6SBV0	Clostridium_virus	84.7	4.8e-218
AXU79092.1|1767489_1767837_+	hypothetical protein	NA	A3QSB8	Clostridium_virus	100.0	5.5e-57
AXU79093.1|1767848_1768019_+	hypothetical protein	NA	A0A0A8WHY8	Clostridium_phage	66.1	2.4e-13
AXU79094.1|1768052_1768244_+	hypothetical protein	NA	A3QSB9	Clostridium_virus	100.0	6.2e-26
AXU79095.1|1768257_1768890_+	hypothetical protein	NA	A3QSC0	Clostridium_virus	100.0	7.1e-111
AXU79096.1|1768900_1769104_+	hypothetical protein	NA	A0A0A8WJP1	Clostridium_phage	66.0	7.3e-09
AXU79097.1|1769297_1769903_+|tail	tail fiber protein H	tail	A3QSC1	Clostridium_virus	99.4	3.9e-98
AXU79098.1|1769926_1770232_+	hypothetical protein	NA	A3QSC2	Clostridium_virus	100.0	9.8e-50
AXU79099.1|1770231_1770414_+	hypothetical protein	NA	A3QSC3	Clostridium_virus	100.0	1.0e-25
AXU79100.1|1770451_1770682_+	Hemolysin XhlA	NA	Q24LG5	Clostridium_phage	100.0	9.7e-34
AXU79101.1|1770701_1770959_+|holin	holin	holin	A3QSC5	Clostridium_virus	100.0	1.1e-41
AXU79102.1|1771219_1772083_+	AbiF-like protein	NA	A3QSC6	Clostridium_virus	100.0	2.2e-163
AXU79103.1|1772161_1772974_+	N-acetylmuramoyl-l-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
AXU79104.1|1773130_1775422_+	penicillin-binding protein	NA	NA	NA	NA	NA
AXU79105.1|1775463_1775640_-	putative PemI	NA	A0A0A8WHQ4	Clostridium_phage	63.8	4.2e-13
AXU79106.1|1775877_1776006_-	hypothetical protein	NA	A0A0A8WEJ5	Clostridium_phage	95.2	5.8e-12
>prophage 8
CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	4228964	1783999	1790513	4228964		Streptococcus_phage(85.71%)	8	NA	NA
AXU79116.1|1783999_1784272_-	Antitoxin epsilon	NA	A0A1X9I6E5	Streptococcus_phage	100.0	5.0e-05
AXU79117.1|1784288_1784498_-	Omega Transcriptional Repressor	NA	A0A1X9I6D5	Streptococcus_phage	100.0	6.3e-32
AXU79118.1|1784595_1785492_-	plasmid replication protein	NA	A0A1X9I765	Streptococcus_phage	99.3	1.9e-154
AXU79119.1|1786024_1786762_-	rRNA adenine N-6-methyltransferase	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
AXU79120.1|1786808_1787042_-	plasmid protein	NA	A0A1X9I6D5	Streptococcus_phage	83.1	3.9e-22
AXU79121.1|1787167_1789102_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	97.8	2.2e-267
AXU79122.1|1789234_1789702_-	GNAT family acetyltransferase	NA	NA	NA	NA	NA
AXU79123.1|1789712_1790513_-	transcription regulator (yobd protein)	NA	A0A2R2ZGW9	Clostridioides_phage	32.9	6.0e-06
>prophage 9
CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	4228964	1930279	1962489	4228964	protease,terminase,head,capsid,lysis,holin,portal,tail	Clostridium_phage(42.11%)	29	NA	NA
AXU79254.1|1930279_1931122_+	hypothetical protein	NA	A0A2R2ZGM6	Clostridioides_phage	73.9	1.5e-119
AXU79255.1|1931137_1931710_+	sigma-70 region 4 type 2	NA	NA	NA	NA	NA
AXU79256.1|1932010_1932337_+	phage transglycosylase	NA	NA	NA	NA	NA
AXU79257.1|1932333_1932759_+	HNH endonuclease domain protein	NA	NA	NA	NA	NA
AXU79258.1|1932927_1933353_+|terminase	phage terminasesmall subunit	terminase	A0A2H4JAK7	uncultured_Caudovirales_phage	75.0	2.0e-48
AXU79259.1|1933362_1935042_+|terminase	terminase	terminase	A0A2H4JAJ4	uncultured_Caudovirales_phage	71.8	4.3e-240
AXU79260.1|1935028_1936282_+|portal	portal protein	portal	A6M949	Geobacillus_virus	58.2	3.3e-136
AXU79261.1|1936274_1936982_+|protease	Clp protease	protease	A0A0A8WFM9	Clostridium_phage	56.8	1.5e-69
AXU79262.1|1936995_1938342_+|capsid	phage major capsid protein, HK97 family	capsid	Q0SPK4	Clostridium_phage	54.4	1.2e-94
AXU79263.1|1938341_1938617_+	phage QLRG family DNA packaging	NA	A0A0A7RU79	Clostridium_phage	31.8	9.3e-07
AXU79264.1|1938619_1938958_+|head,tail	phage head-tail adaptor	head,tail	A0A0A7RUH8	Clostridium_phage	40.6	2.1e-16
AXU79265.1|1938959_1939346_+	hypothetical protein	NA	NA	NA	NA	NA
AXU79266.1|1939355_1939697_+	hypothetical protein	NA	NA	NA	NA	NA
AXU79267.1|1939736_1940315_+|tail	phi13 family phage major tail protein	tail	NA	NA	NA	NA
AXU79268.1|1940337_1940892_+|tail	phage major tail protein, phi13 family	tail	NA	NA	NA	NA
AXU79269.1|1940888_1941218_+	hypothetical protein	NA	NA	NA	NA	NA
AXU79270.1|1941424_1948108_+|tail	TP901 family phage tail tape measure protein	tail	E2ELJ5	Clostridium_phage	40.6	1.6e-64
AXU79271.1|1948113_1948887_+	phage-like protein	NA	A0A2R2ZGH1	Clostridioides_phage	49.4	2.4e-68
AXU79272.1|1948890_1950555_+	hypothetical protein	NA	A0A2R2ZGK5	Clostridioides_phage	50.0	7.5e-152
AXU79273.1|1950554_1952498_+	hypothetical protein	NA	A0A2R2ZGK4	Clostridioides_phage	49.1	9.7e-159
AXU79274.1|1952482_1952683_+	hypothetical protein	NA	NA	NA	NA	NA
AXU79275.1|1952696_1954823_+|tail	phage tail fiber protein	tail	A0A0A8WEI2	Clostridium_phage	94.3	4.1e-118
AXU79276.1|1954822_1956973_+	hypothetical protein	NA	A0A0A8WJ53	Clostridium_phage	96.8	6.2e-239
AXU79277.1|1957000_1958170_+	Listeria-Bacteroides repeat domain	NA	NA	NA	NA	NA
AXU79278.1|1958280_1958778_+|holin,lysis	toxin secretion/phage lysis holin	holin,lysis	A0A2H4JCP5	uncultured_Caudovirales_phage	41.1	3.3e-26
AXU79279.1|1958780_1959605_+	N-acetylmuramoyl-l-alanine amidase	NA	A0A0A8WIP6	Clostridium_phage	48.6	5.3e-66
AXU79280.1|1959664_1960411_+	DNA modification methylase	NA	A0A0H3UZL7	Geobacillus_virus	51.6	5.0e-63
AXU79281.1|1960524_1961082_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	34.8	1.3e-26
AXU79282.1|1961085_1962489_+	two-component sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	25.0	2.8e-14
>prophage 10
CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	4228964	2603784	2609728	4228964	transposase	Clostridium_phage(71.43%)	10	NA	NA
AXU79873.1|2603784_2604237_-	prophage antirepressor-related protein	NA	X5JAW1	Clostridium_phage	90.5	1.1e-70
AXU79874.1|2604233_2604599_-	phage-related regulatory protein	NA	A0A2R2ZGW3	Clostridioides_phage	67.5	3.2e-39
AXU79875.1|2604719_2604872_-	hypothetical protein	NA	X5JAJ2	Clostridium_phage	59.2	1.6e-05
AXU79876.1|2605620_2606469_-	hypothetical protein	NA	NA	NA	NA	NA
AXU79877.1|2606736_2606889_-	hypothetical protein	NA	J9QED5	Clostridium_phage	52.0	9.6e-06
AXU79878.1|2607162_2607495_-	hypothetical protein	NA	NA	NA	NA	NA
AXU79879.1|2607521_2607791_-	hypothetical protein	NA	NA	NA	NA	NA
AXU79880.1|2607924_2608356_-|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	63.7	3.4e-32
AXU79881.1|2609054_2609246_-	repressor	NA	A0A0A8WFF9	Clostridium_phage	68.9	3.2e-14
AXU79882.1|2609350_2609728_-	regulatory protein	NA	A0A0A8WJU1	Clostridium_phage	89.6	6.9e-53
>prophage 11
CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	4228964	3159140	3168093	4228964		Catovirus(50.0%)	8	NA	NA
AXU80350.1|3159140_3161054_-	capsular polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
AXU80351.1|3161137_3162229_-	capsular polysaccharide biosynthesis glycosyl transferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
AXU80352.1|3162234_3163530_-	UDP-glucose 6-dehydrogenase	NA	A0A127AXI2	Bacillus_phage	43.6	2.9e-90
AXU80353.1|3163555_3164308_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
AXU80354.1|3164355_3165264_-	beta-glycosyltransferase	NA	NA	NA	NA	NA
AXU80355.1|3165285_3166035_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
AXU80356.1|3166063_3167239_-	minor teichoic acid biosynthesis protein	NA	NA	NA	NA	NA
AXU80357.1|3167253_3168093_-	glycosyl transferase	NA	A0A2P1ELT8	Moumouvirus	26.3	7.0e-05
>prophage 12
CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	4228964	3732802	3843835	4228964	protease,plate,tRNA,integrase,portal,tail	Clostridium_phage(70.0%)	121	3729515:3729536	3843332:3843353
3729515:3729536	attL	ATTAGAAAAAATTAAAATGGAT	NA	NA	NA	NA
AXU80810.1|3732802_3733816_-|protease	serine protease	protease	NA	NA	NA	NA
AXU80811.1|3734879_3735590_-	two-component response regulator	NA	A0A2R2ZGH8	Clostridioides_phage	36.9	1.5e-37
AXU80812.1|3736014_3738681_-|tRNA	valyl-tRNA synthetase	tRNA	A0A1V0SK04	Klosneuvirus	43.0	1.0e-174
AXU80813.1|3739314_3740142_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
AXU80814.1|3740189_3741626_-	iron-only hydrogenase	NA	NA	NA	NA	NA
AXU80815.1|3741712_3742582_-	putative membrane protein	NA	NA	NA	NA	NA
AXU80816.1|3742739_3743393_-	phosphate transport system protein	NA	NA	NA	NA	NA
AXU80817.1|3743420_3744185_-	phosphate transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	33.5	1.5e-14
AXU80818.1|3744203_3745028_-	phosphate ABC transporter permease	NA	NA	NA	NA	NA
AXU80819.1|3745029_3745947_-	phosphate ABC transporter permease	NA	NA	NA	NA	NA
AXU80820.1|3745930_3746023_-	hypothetical protein	NA	NA	NA	NA	NA
AXU80821.1|3746327_3746801_-	hypothetical protein	NA	NA	NA	NA	NA
AXU80822.1|3747497_3747884_-	phage regulatory protein	NA	X5JAW5	Clostridium_phage	100.0	1.5e-66
AXU80823.1|3747923_3748205_-	phage regulatory protein	NA	Q24LF7	Clostridium_phage	100.0	6.3e-43
AXU80824.1|3748672_3748849_+	hypothetical protein	NA	NA	NA	NA	NA
AXU80825.1|3749067_3749244_-	hypothetical protein	NA	NA	NA	NA	NA
AXU80826.1|3749499_3749688_+	phage-related DNA-directed RNA polymerase 7 kDa polypeptide	NA	X5JA01	Clostridium_phage	100.0	1.8e-30
AXU80827.1|3750086_3750557_-	hypothetical protein	NA	NA	NA	NA	NA
AXU80828.1|3750883_3751714_-	N-acetylmuramoyl-l-alanine amidase	NA	A0A0A8WFX1	Clostridium_phage	80.4	3.1e-122
AXU80829.1|3751713_3751971_-	phage membrane protein	NA	A0A0A8WJ67	Clostridium_phage	100.0	4.1e-41
AXU80830.1|3751990_3752221_-	Hemolysin XhlA	NA	A0A0A8WJR7	Clostridium_phage	100.0	7.4e-34
AXU80831.1|3752391_3752691_-	phage protein	NA	A0A090EUF8	Clostridium_phage	99.0	4.0e-48
AXU80832.1|3752690_3753950_-	hypothetical protein	NA	A0A090D819	Clostridium_phage	100.0	2.7e-141
AXU80833.1|3753983_3754166_-	hypothetical protein	NA	A0A090D845	Clostridium_phage	100.0	1.7e-25
AXU80834.1|3754165_3754459_-	hypothetical protein	NA	A0A090DBT2	Clostridium_phage	100.0	2.0e-47
AXU80835.1|3754472_3756161_-	Glycine rich protein	NA	A0A090EUF1	Clostridium_phage	100.0	3.2e-291
AXU80836.1|3756177_3757200_-|tail	phage tail fiber protein	tail	J9QDX3	Clostridium_phage	95.3	8.1e-157
AXU80837.1|3757212_3757842_-	XkdU related phage protein	NA	A0A0A8WI80	Clostridium_phage	100.0	7.1e-111
AXU80838.1|3757838_3758975_-|plate	putative baseplate J-like protein	plate	J9QE72	Clostridium_phage	96.3	2.6e-204
AXU80839.1|3758983_3759442_-	XkdS-like protein	NA	J9QEB8	Clostridium_phage	91.4	9.2e-76
AXU80840.1|3759419_3759782_-	hypothetical protein	NA	A0A0A8WFG6	Clostridium_phage	92.5	8.3e-56
AXU80841.1|3759774_3760737_-	XkdQ-like protein	NA	B6SBU3	Clostridium_virus	86.6	1.1e-144
AXU80842.1|3760733_3761405_-	SH3 type 3 domain-containing protein	NA	A0A0A8WI78	Clostridium_phage	96.9	4.4e-119
AXU80843.1|3761474_3762269_-	putative permease	NA	A0A0A8WEX9	Clostridium_phage	100.0	2.1e-96
AXU80844.1|3762348_3766677_-|tail	TP901 family phage tail tape measure protein	tail	A0A0A8WJN8	Clostridium_phage	100.0	0.0e+00
AXU80845.1|3766857_3767331_-	Phage XkdN-like protein	NA	A0A0A8WFG0	Clostridium_phage	100.0	1.3e-77
AXU80846.1|3767409_3767832_-	XkdM-like protein	NA	A0A0A8WIZ6	Clostridium_phage	100.0	5.5e-75
AXU80847.1|3767847_3769269_-|tail	putative tail sheath protein	tail	A0A0A8WI77	Clostridium_phage	97.3	7.6e-262
AXU80848.1|3769270_3769474_-	hypothetical protein	NA	B6SBT6	Clostridium_virus	100.0	1.1e-28
AXU80849.1|3769486_3770308_-	hypothetical protein	NA	B6SBT5	Clostridium_virus	97.8	2.2e-152
AXU80850.1|3770325_3770502_-	hypothetical protein	NA	NA	NA	NA	NA
AXU80851.1|3770504_3770951_-	hypothetical protein	NA	B6SBT4	Clostridium_virus	100.0	1.2e-80
AXU80852.1|3770916_3771294_-	hypothetical protein	NA	B6SBT3	Clostridium_virus	100.0	2.3e-64
AXU80853.1|3771290_3771629_-	hypothetical protein	NA	B6SBT2	Clostridium_virus	100.0	1.9e-57
AXU80854.1|3771668_3772706_-	hypothetical protein	NA	A0A0A8WEW9	Clostridium_phage	100.0	3.2e-177
AXU80855.1|3772724_3773108_-	hypothetical protein	NA	A0A0A8WJN5	Clostridium_phage	100.0	5.5e-66
AXU80856.1|3773123_3774458_-	hypothetical protein	NA	B6SBS9	Clostridium_virus	100.0	4.4e-235
AXU80857.1|3774477_3775491_-	hypothetical protein	NA	A0A1J1GF13	Clostridium_phage	100.0	1.2e-192
AXU80858.1|3775477_3776980_-|portal	phage portal protein, SPP1 Gp6-like protein	portal	B6SBS7	Clostridium_virus	99.8	2.7e-289
AXU80859.1|3776970_3778380_-	hypothetical protein	NA	B6SBS6	Clostridium_virus	100.0	9.5e-273
AXU80860.1|3778372_3779074_-	phage DNA-binding protein	NA	A0A0A8WJN3	Clostridium_phage	99.1	5.1e-126
AXU80861.1|3779244_3779502_-	hypothetical protein	NA	NA	NA	NA	NA
AXU80862.1|3779548_3779746_-	hypothetical protein	NA	NA	NA	NA	NA
AXU80863.1|3780196_3780685_-	DNA-binding protein	NA	A0A090EUN5	Clostridium_phage	100.0	6.1e-86
AXU80864.1|3780778_3781504_-	phage anti-repressor	NA	A0A090DCZ8	Clostridium_phage	100.0	4.6e-130
AXU80865.1|3781518_3781926_-	phage protein	NA	A0A090D860	Clostridium_phage	93.3	9.4e-64
AXU80866.1|3782054_3782294_-	hypothetical protein	NA	Q24LC9	Clostridium_phage	97.5	3.8e-41
AXU80867.1|3782307_3782493_-	hypothetical protein	NA	Q24LD0	Clostridium_phage	95.1	1.3e-25
AXU80868.1|3782747_3782978_-	hypothetical protein	NA	NA	NA	NA	NA
AXU80869.1|3783059_3784133_-	DNA methylase	NA	A0A0A8WFL3	Clostridium_phage	98.9	7.4e-209
AXU80870.1|3784240_3784576_-	hypothetical protein	NA	A0A0A8WFN1	Clostridium_phage	100.0	5.9e-56
AXU80871.1|3784559_3784694_-	hypothetical protein	NA	A0A090DCW0	Clostridium_phage	100.0	1.8e-16
AXU80872.1|3784693_3785059_-	hypothetical protein	NA	A0A0A8WFH4	Clostridium_phage	100.0	9.3e-63
AXU80873.1|3785072_3785636_-	hypothetical protein	NA	A0A090D868	Clostridium_phage	100.0	1.9e-99
AXU80874.1|3785663_3786080_-	phage single stranded DNA binding protein	NA	A0A090DBX7	Clostridium_phage	100.0	2.4e-75
AXU80875.1|3786095_3786269_-|integrase	phage resolvase/integrase	integrase	A0A090EUJ6	Clostridium_phage	100.0	5.8e-23
AXU80876.1|3786327_3787209_-	phage replication protein	NA	A0A090DCV4	Clostridium_phage	98.6	2.0e-164
AXU80877.1|3787218_3787827_-	essential recombination function protein	NA	A0A0A8WG30	Clostridium_phage	99.0	2.5e-105
AXU80878.1|3787836_3788346_-	phage protein	NA	A0A0A8WJQ2	Clostridium_phage	95.9	2.6e-79
AXU80879.1|3788428_3788674_-	hypothetical protein	NA	X5JAW8	Clostridium_phage	84.0	1.5e-29
AXU80880.1|3788663_3788846_-	hypothetical protein	NA	NA	NA	NA	NA
AXU80881.1|3788978_3789308_-	phage DNA-binding protein	NA	X5JA04	Clostridium_phage	93.6	3.1e-49
AXU80882.1|3789377_3790169_-	phage protein	NA	X5JAW6	Clostridium_phage	100.0	4.2e-145
AXU80883.1|3790161_3790398_-	putative transcriptional regulator	NA	X5JAJ7	Clostridium_phage	100.0	9.6e-37
AXU80884.1|3790542_3790908_+	phage repressor	NA	X5JA02	Clostridium_phage	100.0	3.6e-59
AXU80885.1|3790922_3791063_-	hypothetical protein	NA	NA	NA	NA	NA
AXU80886.1|3791558_3793007_+	phage DNA-binding protein	NA	NA	NA	NA	NA
AXU80887.1|3793277_3794942_+	phage protein	NA	X5JAC1	Clostridium_phage	96.7	9.7e-192
AXU80888.1|3795075_3795183_-	hypothetical protein	NA	A0A090D809	Clostridium_phage	74.3	7.9e-07
AXU80889.1|3795455_3796574_+|integrase	phage integrase	integrase	X5JB41	Clostridium_phage	77.4	1.2e-161
AXU80890.1|3796724_3797405_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	27.7	1.9e-16
AXU80891.1|3797454_3799431_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AXU80892.1|3799541_3800219_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.3	7.6e-26
AXU80893.1|3801114_3801957_-	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXU80894.1|3802208_3803993_-	endopeptidase	NA	NA	NA	NA	NA
AXU80895.1|3804058_3804724_-	cation transporter	NA	G3MA03	Bacillus_virus	43.2	8.5e-22
AXU80896.1|3804874_3805078_-	Spo0E like sporulation regulatory protein	NA	NA	NA	NA	NA
AXU80897.1|3805113_3805623_-	heptaprenyl diphosphate synthase component I	NA	NA	NA	NA	NA
AXU80898.1|3805828_3806047_+	ferrous iron transport protein A	NA	NA	NA	NA	NA
AXU80899.1|3806064_3808011_+	ferrous iron transport protein B	NA	NA	NA	NA	NA
AXU80900.1|3808170_3809226_-	phosphosugar isomerase	NA	NA	NA	NA	NA
AXU80901.1|3809273_3810074_-	PTS system transporter subunit IID	NA	NA	NA	NA	NA
AXU80902.1|3810066_3810858_-	PTS system transporter subunit IIC	NA	NA	NA	NA	NA
AXU80903.1|3810897_3811320_-	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
AXU80904.1|3811335_3811815_-	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
AXU80905.1|3811946_3814703_-	transcription antiterminator	NA	NA	NA	NA	NA
AXU80906.1|3815300_3816104_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	36.3	9.0e-34
AXU80907.1|3816428_3818798_-	formate acetyltransferase	NA	A0A2K8HKE5	Bacteriophage	45.3	2.8e-06
AXU80908.1|3818802_3819711_-	pyruvate formate-lyase 3 activating enzyme	NA	NA	NA	NA	NA
AXU80909.1|3820055_3821135_-|protease	protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	25.7	3.3e-15
AXU80910.1|3821290_3822640_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AXU80911.1|3822904_3824533_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
AXU80912.1|3824656_3826261_-	FAD-dependent dehydrogenase	NA	NA	NA	NA	NA
AXU80913.1|3826308_3826626_-	hypothetical protein	NA	NA	NA	NA	NA
AXU80914.1|3826630_3826996_-	hypothetical protein	NA	NA	NA	NA	NA
AXU80915.1|3827076_3828114_-	protein translocase	NA	NA	NA	NA	NA
AXU80916.1|3828366_3828951_-	hypothetical protein	NA	NA	NA	NA	NA
AXU80917.1|3828965_3829409_-	hypothetical protein	NA	NA	NA	NA	NA
AXU80918.1|3829409_3830282_-	fimbrial assembly protein	NA	NA	NA	NA	NA
AXU80919.1|3830334_3830694_-	type IV pilin	NA	NA	NA	NA	NA
AXU80920.1|3830747_3831833_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU80921.1|3832003_3833353_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU80922.1|3833375_3834056_-	membrane protein	NA	NA	NA	NA	NA
AXU80923.1|3834447_3835527_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
AXU80924.1|3836104_3837475_+	transporter	NA	NA	NA	NA	NA
AXU80925.1|3837739_3838351_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
AXU80926.1|3838340_3840704_-|protease	ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	44.5	1.1e-175
AXU80927.1|3840883_3841396_+	chromate transport protein	NA	NA	NA	NA	NA
AXU80928.1|3841383_3841911_+	chromate transport protein	NA	NA	NA	NA	NA
AXU80929.1|3841981_3843232_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.1	6.1e-146
AXU80930.1|3843250_3843835_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	58.8	9.3e-57
3843332:3843353	attR	ATCCATTTTAATTTTTTCTAAT	NA	NA	NA	NA
