assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003481905.1_ASM348190v1	CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	1	17715-17804	1	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	6	17743-17776|17743-17776|17743-17776|17743-17776|17743-17776|17743-17776	CP019858.1_31977-32010|CP019858.1_125978-126011|CP019858.1_395387-395420|CP019858.1_1094769-1094802|CP019858.1_3097121-3097088|CP019858.1_4077668-4077635	NA	1	1	Orphan	cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	NA|87aa|up_3|CP019858.1_8855_9116_+,NA|74aa|down_7|CP019858.1_28394_28616_+,NA|138aa|down_9|CP019858.1_39292_39706_+	NA|369aa|up_9|CP019858.1_1561_2668_+	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|69aa|up_8|CP019858.1_2804_3011_+	pfam13275, S4_2, S4 domain	NA|372aa|up_7|CP019858.1_3027_4143_+	PRK00064, recF, recombination protein F; Reviewed	NA|634aa|up_6|CP019858.1_4143_6045_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|809aa|up_5|CP019858.1_6064_8491_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|99aa|up_4|CP019858.1_8559_8856_+	pfam12732, YtxH, YtxH-like protein	NA|87aa|up_3|CP019858.1_8855_9116_+	NA	NA|106aa|up_2|CP019858.1_9127_9445_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|136aa|up_1|CP019858.1_9448_9856_+	PRK04069, PRK04069, serine-protein kinase RsbW; Provisional	NA|258aa|up_0|CP019858.1_9855_10629_+	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA|170aa|down_0|CP019858.1_21216_21726_+	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only]	NA|294aa|down_1|CP019858.1_21737_22619_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|424aa|down_2|CP019858.1_23077_24349_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|152aa|down_3|CP019858.1_24669_25125_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|546aa|down_4|CP019858.1_25595_27233_+	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|117aa|down_5|CP019858.1_27291_27642_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|200aa|down_6|CP019858.1_27654_28254_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|74aa|down_7|CP019858.1_28394_28616_+	NA	NA|402aa|down_8|CP019858.1_28686_29892_-	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins	NA|138aa|down_9|CP019858.1_39292_39706_+	NA
GCA_003481905.1_ASM348190v1	CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	2	141435-141513	2	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	NA,NA|226aa|down_4|CP019858.1_158293_158971_+	NA|278aa|up_9|CP019858.1_118521_119355_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|CP019858.1_119342_120209_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|CP019858.1_120202_121006_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|CP019858.1_121037_121769_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|CP019858.1_121888_122320_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|CP019858.1_122348_122741_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|CP019858.1_123199_123952_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|CP019858.1_136485_137670_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|CP019858.1_138042_140394_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|CP019858.1_140415_140955_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|CP019858.1_153979_154819_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|CP019858.1_154815_155997_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|CP019858.1_156300_157203_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|CP019858.1_157224_158304_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|CP019858.1_158293_158971_+	NA	NA|72aa|down_5|CP019858.1_159013_159229_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|CP019858.1_159257_160337_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|CP019858.1_160336_161089_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|CP019858.1_161089_161647_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|CP019858.1_161816_163163_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_003481905.1_ASM348190v1	CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	3	148857-148946	3	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	6	148885-148918|148885-148918|148885-148918|148885-148918|148885-148918|148885-148918	CP019858.1_31977-32010|CP019858.1_125978-126011|CP019858.1_395387-395420|CP019858.1_1094769-1094802|CP019858.1_3097121-3097088|CP019858.1_4077668-4077635	NA	1	1	Orphan	cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	NA,NA|226aa|down_4|CP019858.1_158293_158971_+	NA|278aa|up_9|CP019858.1_118521_119355_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|CP019858.1_119342_120209_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|CP019858.1_120202_121006_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|CP019858.1_121037_121769_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|CP019858.1_121888_122320_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|CP019858.1_122348_122741_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|CP019858.1_123199_123952_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|CP019858.1_136485_137670_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|CP019858.1_138042_140394_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|CP019858.1_140415_140955_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|CP019858.1_153979_154819_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|CP019858.1_154815_155997_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|CP019858.1_156300_157203_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|CP019858.1_157224_158304_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|CP019858.1_158293_158971_+	NA	NA|72aa|down_5|CP019858.1_159013_159229_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|CP019858.1_159257_160337_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|CP019858.1_160336_161089_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|CP019858.1_161089_161647_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|CP019858.1_161816_163163_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_003481905.1_ASM348190v1	CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	4	1341923-1342349	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	6,6,6	6	Orphan	cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	NA,NA|84aa|down_1|CP019858.1_1343938_1344190_+,NA|38aa|down_2|CP019858.1_1344498_1344612_+,NA|70aa|down_3|CP019858.1_1344819_1345029_+,NA|128aa|down_4|CP019858.1_1345397_1345781_-,NA|115aa|down_5|CP019858.1_1345907_1346252_+,NA|106aa|down_6|CP019858.1_1347633_1347951_-,NA|65aa|down_9|CP019858.1_1350336_1350531_-	NA|271aa|up_9|CP019858.1_1329032_1329845_+	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA)	NA|442aa|up_8|CP019858.1_1330048_1331374_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|360aa|up_7|CP019858.1_1331586_1332666_+	pfam02618, YceG, YceG-like family	NA|225aa|up_6|CP019858.1_1332837_1333512_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_5|CP019858.1_1333498_1334746_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|555aa|up_4|CP019858.1_1334817_1336482_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|95aa|up_3|CP019858.1_1336578_1336863_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|506aa|up_2|CP019858.1_1336885_1338403_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|274aa|up_1|CP019858.1_1338527_1339349_-	sd00006, TPR, Tetratricopeptide repeat	NA|476aa|up_0|CP019858.1_1339539_1340967_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|75aa|down_0|CP019858.1_1342635_1342860_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|84aa|down_1|CP019858.1_1343938_1344190_+	NA	NA|38aa|down_2|CP019858.1_1344498_1344612_+	NA	NA|70aa|down_3|CP019858.1_1344819_1345029_+	NA	NA|128aa|down_4|CP019858.1_1345397_1345781_-	NA	NA|115aa|down_5|CP019858.1_1345907_1346252_+	NA	NA|106aa|down_6|CP019858.1_1347633_1347951_-	NA	NA|130aa|down_7|CP019858.1_1349011_1349401_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|170aa|down_8|CP019858.1_1349725_1350235_+	pfam04892, VanZ, VanZ like family	NA|65aa|down_9|CP019858.1_1350336_1350531_-	NA
GCA_003481905.1_ASM348190v1	CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	5	1545884-1546371	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	5,7,6	7	Orphan	cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	NA|183aa|up_4|CP019858.1_1541028_1541577_-,NA|51aa|up_0|CP019858.1_1545451_1545604_+,NA|80aa|down_4|CP019858.1_1553517_1553757_+,NA|59aa|down_5|CP019858.1_1553943_1554120_-	NA|260aa|up_9|CP019858.1_1535339_1536119_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|195aa|up_8|CP019858.1_1536222_1536807_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|481aa|up_7|CP019858.1_1537006_1538449_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_6|CP019858.1_1538765_1539710_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|329aa|up_5|CP019858.1_1539974_1540961_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|183aa|up_4|CP019858.1_1541028_1541577_-	NA	NA|143aa|up_3|CP019858.1_1541728_1542157_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|217aa|up_2|CP019858.1_1542241_1542892_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_1|CP019858.1_1543009_1544365_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|51aa|up_0|CP019858.1_1545451_1545604_+	NA	NA|578aa|down_0|CP019858.1_1546696_1548430_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|282aa|down_1|CP019858.1_1548669_1549515_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|745aa|down_2|CP019858.1_1549545_1551780_-	cd01948, EAL, EAL domain	NA|270aa|down_3|CP019858.1_1552563_1553373_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_4|CP019858.1_1553517_1553757_+	NA	NA|59aa|down_5|CP019858.1_1553943_1554120_-	NA	NA|225aa|down_6|CP019858.1_1554624_1555299_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|398aa|down_7|CP019858.1_1555786_1556980_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|68aa|down_8|CP019858.1_1557058_1557262_-	pfam09035, Tn916-Xis, Excisionase from transposon Tn916	NA|337aa|down_9|CP019858.1_1557261_1558272_-	pfam02486, Rep_trans, Replication initiation factor
GCA_003481905.1_ASM348190v1	CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	6	1662655-1663413	3,6,3	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	Orphan	GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	10,11,11	11	Orphan	cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	NA|190aa|up_7|CP019858.1_1652545_1653115_+,NA|61aa|up_4|CP019858.1_1656064_1656247_-,NA|323aa|down_4|CP019858.1_1668324_1669293_+	NA|195aa|up_9|CP019858.1_1650904_1651489_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|300aa|up_8|CP019858.1_1651641_1652541_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|190aa|up_7|CP019858.1_1652545_1653115_+	NA	NA|216aa|up_6|CP019858.1_1653281_1653929_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|CP019858.1_1654318_1655233_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|CP019858.1_1656064_1656247_-	NA	NA|283aa|up_3|CP019858.1_1656657_1657506_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|CP019858.1_1657524_1658352_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|299aa|up_1|CP019858.1_1658326_1659223_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|CP019858.1_1659902_1661996_+	cd01948, EAL, EAL domain	NA|273aa|down_0|CP019858.1_1664060_1664879_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_1|CP019858.1_1665011_1667132_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_2|CP019858.1_1667157_1667385_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_3|CP019858.1_1667711_1668152_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|323aa|down_4|CP019858.1_1668324_1669293_+	NA	NA|403aa|down_5|CP019858.1_1669769_1670978_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_6|CP019858.1_1671038_1671920_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|305aa|down_7|CP019858.1_1672335_1673250_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_8|CP019858.1_1673472_1674018_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain	NA|383aa|down_9|CP019858.1_1674117_1675266_+	COG2006, COG2006, Uncharacterized conserved protein [Function unknown]
GCA_003481905.1_ASM348190v1	CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	7	1752938-1753493	4,7,4	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	7,8,8	8	Orphan	cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	NA|134aa|up_8|CP019858.1_1747608_1748010_+,NA|121aa|up_7|CP019858.1_1748003_1748366_+,NA|146aa|up_5|CP019858.1_1748783_1749221_+,NA|62aa|up_4|CP019858.1_1749204_1749390_+,NA|35aa|up_0|CP019858.1_1752542_1752647_+,NA|50aa|down_1|CP019858.1_1756314_1756464_+	NA|78aa|up_9|CP019858.1_1747365_1747599_+	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|134aa|up_8|CP019858.1_1747608_1748010_+	NA	NA|121aa|up_7|CP019858.1_1748003_1748366_+	NA	NA|142aa|up_6|CP019858.1_1748365_1748791_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|146aa|up_5|CP019858.1_1748783_1749221_+	NA	NA|62aa|up_4|CP019858.1_1749204_1749390_+	NA	NA|437aa|up_3|CP019858.1_1749390_1750701_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_2|CP019858.1_1750717_1751188_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_1|CP019858.1_1751259_1751700_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|35aa|up_0|CP019858.1_1752542_1752647_+	NA	NA|290aa|down_0|CP019858.1_1755445_1756315_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|50aa|down_1|CP019858.1_1756314_1756464_+	NA	NA|259aa|down_2|CP019858.1_1756593_1757370_+	pfam09851, SHOCT, Short C-terminal domain	NA|784aa|down_3|CP019858.1_1757432_1759784_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|231aa|down_4|CP019858.1_1759800_1760493_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|631aa|down_5|CP019858.1_1760485_1762378_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_6|CP019858.1_1762391_1762652_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_7|CP019858.1_1762656_1763076_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_8|CP019858.1_1763076_1764126_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_9|CP019858.1_1764118_1764736_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)
GCA_003481905.1_ASM348190v1	CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	8	1754095-1754977	5,8,5,6	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no		cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	Orphan	GTTTTAGATTAACTATATGGAATGTAAA,GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAA,CGTTTTAGATTAACTATATGGAATGTAAATAGCTGTGAT	28,29,28,39	0	0	NA	NA	NA:I-A:NA:NA	7,13,13,7	13	Orphan	cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	NA|134aa|up_8|CP019858.1_1747608_1748010_+,NA|121aa|up_7|CP019858.1_1748003_1748366_+,NA|146aa|up_5|CP019858.1_1748783_1749221_+,NA|62aa|up_4|CP019858.1_1749204_1749390_+,NA|35aa|up_0|CP019858.1_1752542_1752647_+,NA|50aa|down_1|CP019858.1_1756314_1756464_+	NA|78aa|up_9|CP019858.1_1747365_1747599_+	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|134aa|up_8|CP019858.1_1747608_1748010_+	NA	NA|121aa|up_7|CP019858.1_1748003_1748366_+	NA	NA|142aa|up_6|CP019858.1_1748365_1748791_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|146aa|up_5|CP019858.1_1748783_1749221_+	NA	NA|62aa|up_4|CP019858.1_1749204_1749390_+	NA	NA|437aa|up_3|CP019858.1_1749390_1750701_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_2|CP019858.1_1750717_1751188_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_1|CP019858.1_1751259_1751700_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|35aa|up_0|CP019858.1_1752542_1752647_+	NA	NA|290aa|down_0|CP019858.1_1755445_1756315_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|50aa|down_1|CP019858.1_1756314_1756464_+	NA	NA|259aa|down_2|CP019858.1_1756593_1757370_+	pfam09851, SHOCT, Short C-terminal domain	NA|784aa|down_3|CP019858.1_1757432_1759784_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|231aa|down_4|CP019858.1_1759800_1760493_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|631aa|down_5|CP019858.1_1760485_1762378_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_6|CP019858.1_1762391_1762652_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_7|CP019858.1_1762656_1763076_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_8|CP019858.1_1763076_1764126_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_9|CP019858.1_1764118_1764736_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)
GCA_003481905.1_ASM348190v1	CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	9	1906075-1907814	7,9,6	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	23,26,26	26	Orphan	cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	NA,NA|96aa|down_0|CP019858.1_1908222_1908510_+,NA|33aa|down_1|CP019858.1_1908534_1908633_+,NA|59aa|down_6|CP019858.1_1914900_1915077_-,NA|341aa|down_7|CP019858.1_1915651_1916674_+,NA|258aa|down_9|CP019858.1_1917580_1918354_+	NA|200aa|up_9|CP019858.1_1889610_1890210_-	COG4110, COG4110, Uncharacterized protein involved in stress response [General function prediction only]	NA|266aa|up_8|CP019858.1_1890312_1891110_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|329aa|up_7|CP019858.1_1891419_1892406_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_6|CP019858.1_1892889_1894620_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|172aa|up_5|CP019858.1_1895144_1895660_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|825aa|up_4|CP019858.1_1896465_1898940_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_3|CP019858.1_1898939_1900397_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_2|CP019858.1_1900815_1903173_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_1|CP019858.1_1903258_1903576_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|424aa|up_0|CP019858.1_1904156_1905428_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|96aa|down_0|CP019858.1_1908222_1908510_+	NA	NA|33aa|down_1|CP019858.1_1908534_1908633_+	NA	NA|184aa|down_2|CP019858.1_1909048_1909600_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_3|CP019858.1_1909790_1910753_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|615aa|down_4|CP019858.1_1911047_1912892_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|195aa|down_5|CP019858.1_1913213_1913798_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|59aa|down_6|CP019858.1_1914900_1915077_-	NA	NA|341aa|down_7|CP019858.1_1915651_1916674_+	NA	NA|296aa|down_8|CP019858.1_1916687_1917575_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_9|CP019858.1_1917580_1918354_+	NA
GCA_003481905.1_ASM348190v1	CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	10	2263566-2263792	8,7,10	PILER-CR,CRT,CRISPRCasFinder	no	csa3	cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	Type I-A	GTTTTATATCAACTATGTGGTATGTAAAAT,ATTTTACATACCACATAGTTGATATAAAAC,TTTTACATACCACATAGTTGATATAAAAC	30,30,29	0	0	NA	NA	I-A:I-A:I-A	3,3,3	3	Orphan	cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	NA|55aa|up_6|CP019858.1_2258359_2258524_+,NA|133aa|up_4|CP019858.1_2260055_2260454_-,NA|59aa|up_1|CP019858.1_2262601_2262778_+,NA|55aa|down_1|CP019858.1_2265339_2265504_-,NA|45aa|down_5|CP019858.1_2268156_2268291_-	NA|113aa|up_9|CP019858.1_2253965_2254304_+	pfam12650, DUF3784, Domain of unknown function (DUF3784)	NA|479aa|up_8|CP019858.1_2254706_2256143_-	PRK14328, PRK14328, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|479aa|up_7|CP019858.1_2256390_2257827_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|55aa|up_6|CP019858.1_2258359_2258524_+	NA	NA|184aa|up_5|CP019858.1_2258654_2259206_-	pfam17099, TrpP, Tryptophan transporter TrpP	NA|133aa|up_4|CP019858.1_2260055_2260454_-	NA	NA|162aa|up_3|CP019858.1_2260809_2261295_-	pfam08239, SH3_3, Bacterial SH3 domain	NA|61aa|up_2|CP019858.1_2262026_2262209_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|59aa|up_1|CP019858.1_2262601_2262778_+	NA	NA|67aa|up_0|CP019858.1_2263003_2263204_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|282aa|down_0|CP019858.1_2264271_2265117_+	pfam13026, DUF3887, Protein of unknown function (DUF3887)	NA|55aa|down_1|CP019858.1_2265339_2265504_-	NA	NA|111aa|down_2|CP019858.1_2266044_2266377_-	pfam02627, CMD, Carboxymuconolactone decarboxylase family	NA|214aa|down_3|CP019858.1_2266620_2267262_-	COG5658, COG5658, Predicted integral membrane protein [Function unknown]	csa3|99aa|down_4|CP019858.1_2267242_2267539_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|45aa|down_5|CP019858.1_2268156_2268291_-	NA	NA|251aa|down_6|CP019858.1_2268501_2269254_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|552aa|down_7|CP019858.1_2269312_2270968_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|123aa|down_8|CP019858.1_2271196_2271565_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|265aa|down_9|CP019858.1_2271713_2272508_+	COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
GCA_003481905.1_ASM348190v1	CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	11	2605062-2605354	9,8,11	PILER-CR,CRT,CRISPRCasFinder	no	c2c9_V-U4	cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	Type V-U4	GTTTTAGATTAACTATATGGAATGTAAATT,AATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC	30,30,29	0	0	NA	NA	NA:NA:I-A	4,4,4	4	TypeV-U4	cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	NA|138aa|up_7|CP019858.1_2601315_2601729_+,NA|67aa|up_6|CP019858.1_2601747_2601948_+,NA|106aa|up_5|CP019858.1_2602325_2602643_+,NA|117aa|up_4|CP019858.1_2602892_2603243_+,NA|54aa|up_3|CP019858.1_2603571_2603733_-,NA|151aa|up_2|CP019858.1_2603784_2604237_-,NA|51aa|up_0|CP019858.1_2604719_2604872_-,NA|51aa|down_1|CP019858.1_2606736_2606889_-,NA|111aa|down_2|CP019858.1_2607162_2607495_-,NA|90aa|down_3|CP019858.1_2607521_2607791_-	NA|113aa|up_9|CP019858.1_2600541_2600880_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|78aa|up_8|CP019858.1_2601098_2601332_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|138aa|up_7|CP019858.1_2601315_2601729_+	NA	NA|67aa|up_6|CP019858.1_2601747_2601948_+	NA	NA|106aa|up_5|CP019858.1_2602325_2602643_+	NA	NA|117aa|up_4|CP019858.1_2602892_2603243_+	NA	NA|54aa|up_3|CP019858.1_2603571_2603733_-	NA	NA|151aa|up_2|CP019858.1_2603784_2604237_-	NA	NA|122aa|up_1|CP019858.1_2604233_2604599_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|51aa|up_0|CP019858.1_2604719_2604872_-	NA	NA|283aa|down_0|CP019858.1_2605620_2606469_-	pfam09851, SHOCT, Short C-terminal domain	NA|51aa|down_1|CP019858.1_2606736_2606889_-	NA	NA|111aa|down_2|CP019858.1_2607162_2607495_-	NA	NA|90aa|down_3|CP019858.1_2607521_2607791_-	NA	c2c9_V-U4|144aa|down_4|CP019858.1_2607924_2608356_-	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain	NA|64aa|down_5|CP019858.1_2609054_2609246_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|126aa|down_6|CP019858.1_2609350_2609728_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|165aa|down_7|CP019858.1_2610532_2611027_+	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|63aa|down_8|CP019858.1_2612062_2612251_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|117aa|down_9|CP019858.1_2612412_2612763_+	pfam12676, DUF3796, Protein of unknown function (DUF3796)
GCA_003481905.1_ASM348190v1	CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	12	2770811-2770968	10	PILER-CR	no	cas3,cas5,cas7,cas6	cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	Unclear	GGTTTAAGATTAACTAAGTGG------------GTTTCA	39	0	0	NA	NA	NA	2	2	Unclear	cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	NA,NA|492aa|down_3|CP019858.1_2775391_2776867_-	NA|448aa|up_9|CP019858.1_2763203_2764547_-	pfam06898, YqfD, Putative stage IV sporulation protein YqfD	NA|79aa|up_8|CP019858.1_2764559_2764796_-	pfam07873, YabP, YabP family	NA|188aa|up_7|CP019858.1_2765008_2765572_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_6|CP019858.1_2765764_2766262_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_5|CP019858.1_2766372_2766816_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_4|CP019858.1_2766845_2767025_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_3|CP019858.1_2767187_2767538_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_2|CP019858.1_2767580_2768879_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|253aa|up_1|CP019858.1_2768880_2769639_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|CP019858.1_2769657_2770605_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|CP019858.1_2771110_2773519_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|266aa|down_1|CP019858.1_2773545_2774343_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|338aa|down_2|CP019858.1_2774358_2775372_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|492aa|down_3|CP019858.1_2775391_2776867_-	NA	cas6|246aa|down_4|CP019858.1_2776871_2777609_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|370aa|down_5|CP019858.1_2777866_2778976_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_6|CP019858.1_2779005_2779773_+	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|458aa|down_7|CP019858.1_2779960_2781334_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|312aa|down_8|CP019858.1_2781369_2782305_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|385aa|down_9|CP019858.1_2783270_2784425_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional
GCA_003481905.1_ASM348190v1	CP019858	Clostridioides difficile strain DSM 29688 chromosome, complete genome	13	2853197-2853753	12,11,9	CRISPRCasFinder,PILER-CR,CRT	no		cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	Orphan	ATTTACATTCCATATAGTTAATATAAAAC,GTTTTATATTAACTATGTGGAATGTAAA,TTTACATTCCANATAGTTAATATAAAAC	29,28,28	0	0	NA	NA	I-A:I-A:I-A	8,8,8	8	Orphan	cas14k,csa3,RT,WYL,cas3,DEDDh,DinG,cas14j,c2c9_V-U4,cas5,cas7,cas6	NA,NA|53aa|down_0|CP019858.1_2854038_2854197_-	NA|240aa|up_9|CP019858.1_2840767_2841487_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|238aa|up_8|CP019858.1_2841533_2842247_-	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism]	NA|451aa|up_7|CP019858.1_2842422_2843775_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|517aa|up_6|CP019858.1_2843871_2845422_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|272aa|up_5|CP019858.1_2845472_2846288_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|127aa|up_4|CP019858.1_2847074_2847455_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|406aa|up_3|CP019858.1_2847549_2848767_-	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|543aa|up_2|CP019858.1_2849425_2851054_+	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase	NA|332aa|up_1|CP019858.1_2851174_2852170_+	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|128aa|up_0|CP019858.1_2852347_2852731_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|53aa|down_0|CP019858.1_2854038_2854197_-	NA	NA|457aa|down_1|CP019858.1_2854555_2855926_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|373aa|down_2|CP019858.1_2856139_2857258_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|223aa|down_3|CP019858.1_2857574_2858243_-	pfam04892, VanZ, VanZ like family	NA|807aa|down_4|CP019858.1_2859093_2861514_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|117aa|down_5|CP019858.1_2861867_2862218_-	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|191aa|down_6|CP019858.1_2862334_2862907_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|230aa|down_7|CP019858.1_2862907_2863597_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|213aa|down_8|CP019858.1_2863872_2864511_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|668aa|down_9|CP019858.1_2864663_2866667_+	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme
