assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003482035.1_ASM348203v1	CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	1	150452-150530	1	CRISPRCasFinder	no		csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_4|CP012320.1_167366_168044_+	NA|278aa|up_9|CP012320.1_127702_128536_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|CP012320.1_128523_129390_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|CP012320.1_129383_130187_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|CP012320.1_130218_130950_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|CP012320.1_131069_131501_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|CP012320.1_131529_131922_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|CP012320.1_132380_133133_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|CP012320.1_145501_146686_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|CP012320.1_147058_149410_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|CP012320.1_149431_149971_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|CP012320.1_163052_163892_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|CP012320.1_163888_165070_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|CP012320.1_165373_166276_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|CP012320.1_166297_167377_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|CP012320.1_167366_168044_+	NA	NA|72aa|down_5|CP012320.1_168086_168302_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|CP012320.1_168330_169410_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|CP012320.1_169409_170162_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|CP012320.1_170162_170720_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|CP012320.1_170889_172236_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_003482035.1_ASM348203v1	CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	3	1007250-1007327	3	CRISPRCasFinder	no	cas14j	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	AAAAAATAAGAAAGTTTATAAATA	24	0	0	NA	NA	NA	1	1	TypeV	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA	NA|527aa|up_9|CP012320.1_991889_993470_+	COG0063, COG0063, Predicted sugar kinase [Carbohydrate transport and metabolism]	cas14j|370aa|up_8|CP012320.1_994224_995334_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|149aa|up_7|CP012320.1_995617_996064_+	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|348aa|up_6|CP012320.1_996084_997128_+	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|387aa|up_5|CP012320.1_997898_999059_+	PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|377aa|up_4|CP012320.1_999060_1000191_+	TIGR02092, Glycogen_biosynthesis_protein_GlgD, glucose-1-phosphate adenylyltransferase, GlgD subunit	NA|481aa|up_3|CP012320.1_1000219_1001662_+	cd03791, GT5_Glycogen_synthase_DULL1-like, Glycogen synthase GlgA and similar proteins	NA|807aa|up_2|CP012320.1_1001675_1004096_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|622aa|up_1|CP012320.1_1004100_1005966_+	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|218aa|up_0|CP012320.1_1006210_1006864_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|492aa|down_0|CP012320.1_1007501_1008977_+	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|138aa|down_1|CP012320.1_1009063_1009477_+	TIGR03330, SAM_DCase_Bsu, S-adenosylmethionine decarboxylase proenzyme, Bacillus form	NA|284aa|down_2|CP012320.1_1009506_1010358_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|293aa|down_3|CP012320.1_1010347_1011226_+	cd11593, Agmatinase-like_2, Agmatinase and related proteins	NA|67aa|down_4|CP012320.1_1011405_1011606_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|497aa|down_5|CP012320.1_1012072_1013563_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|499aa|down_6|CP012320.1_1013820_1015317_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|117aa|down_7|CP012320.1_1015450_1015801_+	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain	cas14j|370aa|down_8|CP012320.1_1016448_1017558_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|177aa|down_9|CP012320.1_1017718_1018249_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
GCA_003482035.1_ASM348203v1	CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	4	1302442-1303395	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	14,14,14	14	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|52aa|down_0|CP012320.1_1304611_1304767_+,NA|84aa|down_1|CP012320.1_1305012_1305264_+,NA|38aa|down_2|CP012320.1_1305573_1305687_+,NA|70aa|down_3|CP012320.1_1305894_1306104_+,NA|128aa|down_4|CP012320.1_1306472_1306856_-,NA|115aa|down_5|CP012320.1_1306982_1307327_+,NA|106aa|down_6|CP012320.1_1308710_1309028_-,NA|190aa|down_7|CP012320.1_1309319_1309889_-	NA|360aa|up_9|CP012320.1_1290279_1291359_+	pfam02618, YceG, YceG-like family	NA|225aa|up_8|CP012320.1_1291530_1292205_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_7|CP012320.1_1292191_1293439_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|555aa|up_6|CP012320.1_1293510_1295175_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|95aa|up_5|CP012320.1_1295271_1295556_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|506aa|up_4|CP012320.1_1295578_1297096_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|274aa|up_3|CP012320.1_1297220_1298042_-	sd00006, TPR, Tetratricopeptide repeat	NA|476aa|up_2|CP012320.1_1298232_1299660_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|224aa|up_1|CP012320.1_1299969_1300641_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|300aa|up_0|CP012320.1_1300634_1301534_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|52aa|down_0|CP012320.1_1304611_1304767_+	NA	NA|84aa|down_1|CP012320.1_1305012_1305264_+	NA	NA|38aa|down_2|CP012320.1_1305573_1305687_+	NA	NA|70aa|down_3|CP012320.1_1305894_1306104_+	NA	NA|128aa|down_4|CP012320.1_1306472_1306856_-	NA	NA|115aa|down_5|CP012320.1_1306982_1307327_+	NA	NA|106aa|down_6|CP012320.1_1308710_1309028_-	NA	NA|190aa|down_7|CP012320.1_1309319_1309889_-	NA	NA|61aa|down_8|CP012320.1_1310332_1310515_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|170aa|down_9|CP012320.1_1311042_1311552_+	pfam04892, VanZ, VanZ like family
GCA_003482035.1_ASM348203v1	CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	5	1513685-1514437	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	DinG	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type IV-A	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	10,11,10	11	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|183aa|up_5|CP012320.1_1508330_1508879_-,NA|80aa|down_4|CP012320.1_1521569_1521809_+,NA|59aa|down_5|CP012320.1_1521996_1522173_-,NA|45aa|down_9|CP012320.1_1524799_1524934_+	NA|195aa|up_9|CP012320.1_1503530_1504115_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|477aa|up_8|CP012320.1_1504314_1505745_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_7|CP012320.1_1506060_1507005_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|312aa|up_6|CP012320.1_1507275_1508211_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|183aa|up_5|CP012320.1_1508330_1508879_-	NA	NA|143aa|up_4|CP012320.1_1509030_1509459_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|217aa|up_3|CP012320.1_1509543_1510194_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_2|CP012320.1_1510311_1511667_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|120aa|up_1|CP012320.1_1512408_1512768_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|119aa|up_0|CP012320.1_1512797_1513154_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|578aa|down_0|CP012320.1_1514762_1516496_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|282aa|down_1|CP012320.1_1516735_1517581_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|745aa|down_2|CP012320.1_1517611_1519846_-	cd01948, EAL, EAL domain	NA|270aa|down_3|CP012320.1_1520615_1521425_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_4|CP012320.1_1521569_1521809_+	NA	NA|59aa|down_5|CP012320.1_1521996_1522173_-	NA	NA|225aa|down_6|CP012320.1_1522677_1523352_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|185aa|down_7|CP012320.1_1523571_1524126_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|122aa|down_8|CP012320.1_1524203_1524569_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|45aa|down_9|CP012320.1_1524799_1524934_+	NA
GCA_003482035.1_ASM348203v1	CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	6	1625057-1625350	3,6,3	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	3,4,4	4	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|190aa|up_7|CP012320.1_1614945_1615515_+,NA|61aa|up_4|CP012320.1_1618464_1618647_-,NA|95aa|down_0|CP012320.1_1625517_1625802_-,NA|323aa|down_5|CP012320.1_1630272_1631241_+	NA|195aa|up_9|CP012320.1_1613304_1613889_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|300aa|up_8|CP012320.1_1614041_1614941_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|190aa|up_7|CP012320.1_1614945_1615515_+	NA	NA|216aa|up_6|CP012320.1_1615681_1616329_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|CP012320.1_1616718_1617633_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|CP012320.1_1618464_1618647_-	NA	NA|283aa|up_3|CP012320.1_1619057_1619906_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|CP012320.1_1619924_1620752_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|299aa|up_1|CP012320.1_1620726_1621623_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|CP012320.1_1622302_1624396_+	cd01948, EAL, EAL domain	NA|95aa|down_0|CP012320.1_1625517_1625802_-	NA	NA|273aa|down_1|CP012320.1_1626008_1626827_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_2|CP012320.1_1626959_1629080_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_3|CP012320.1_1629105_1629333_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_4|CP012320.1_1629659_1630100_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|323aa|down_5|CP012320.1_1630272_1631241_+	NA	NA|403aa|down_6|CP012320.1_1631716_1632925_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_7|CP012320.1_1632985_1633867_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|305aa|down_8|CP012320.1_1634282_1635197_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_9|CP012320.1_1635419_1635965_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain
GCA_003482035.1_ASM348203v1	CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	7	1717734-1718090	4,7,4	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	4,5,5	5	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|116aa|up_9|CP012320.1_1710785_1711133_+,NA|269aa|up_7|CP012320.1_1711532_1712339_+,NA|146aa|up_6|CP012320.1_1712687_1713125_+,NA|62aa|up_5|CP012320.1_1713108_1713294_+,NA|276aa|up_2|CP012320.1_1715150_1715978_+,NA|35aa|up_0|CP012320.1_1717338_1717443_+,NA|45aa|down_1|CP012320.1_1719554_1719689_+	NA|116aa|up_9|CP012320.1_1710785_1711133_+	NA	NA|97aa|up_8|CP012320.1_1711132_1711423_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|269aa|up_7|CP012320.1_1711532_1712339_+	NA	NA|146aa|up_6|CP012320.1_1712687_1713125_+	NA	NA|62aa|up_5|CP012320.1_1713108_1713294_+	NA	NA|437aa|up_4|CP012320.1_1713294_1714605_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_3|CP012320.1_1714621_1715092_+	pfam09393, DUF2001, Phage tail tube protein	NA|276aa|up_2|CP012320.1_1715150_1715978_+	NA	NA|147aa|up_1|CP012320.1_1716049_1716490_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|35aa|up_0|CP012320.1_1717338_1717443_+	NA	NA|289aa|down_0|CP012320.1_1718635_1719502_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|45aa|down_1|CP012320.1_1719554_1719689_+	NA	NA|176aa|down_2|CP012320.1_1720366_1720894_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	NA|256aa|down_3|CP012320.1_1721031_1721799_+	pfam14471, DUF4428, Domain of unknown function (DUF4428)	NA|791aa|down_4|CP012320.1_1721864_1724237_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|230aa|down_5|CP012320.1_1724253_1724943_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|631aa|down_6|CP012320.1_1724935_1726828_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_7|CP012320.1_1726841_1727102_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_8|CP012320.1_1727106_1727526_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_9|CP012320.1_1727526_1728576_+	pfam04865, Baseplate_J, Baseplate J-like protein
GCA_003482035.1_ASM348203v1	CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	8	1719955-1720245	8	CRISPRCasFinder	no		csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATATGGAATGTAAATC	30	0	0	NA	NA	I-A	4	4	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|269aa|up_9|CP012320.1_1711532_1712339_+,NA|146aa|up_8|CP012320.1_1712687_1713125_+,NA|62aa|up_7|CP012320.1_1713108_1713294_+,NA|276aa|up_4|CP012320.1_1715150_1715978_+,NA|35aa|up_2|CP012320.1_1717338_1717443_+,NA|45aa|up_0|CP012320.1_1719554_1719689_+,NA	NA|269aa|up_9|CP012320.1_1711532_1712339_+	NA	NA|146aa|up_8|CP012320.1_1712687_1713125_+	NA	NA|62aa|up_7|CP012320.1_1713108_1713294_+	NA	NA|437aa|up_6|CP012320.1_1713294_1714605_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_5|CP012320.1_1714621_1715092_+	pfam09393, DUF2001, Phage tail tube protein	NA|276aa|up_4|CP012320.1_1715150_1715978_+	NA	NA|147aa|up_3|CP012320.1_1716049_1716490_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|35aa|up_2|CP012320.1_1717338_1717443_+	NA	NA|289aa|up_1|CP012320.1_1718635_1719502_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|45aa|up_0|CP012320.1_1719554_1719689_+	NA	NA|176aa|down_0|CP012320.1_1720366_1720894_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	NA|256aa|down_1|CP012320.1_1721031_1721799_+	pfam14471, DUF4428, Domain of unknown function (DUF4428)	NA|791aa|down_2|CP012320.1_1721864_1724237_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|230aa|down_3|CP012320.1_1724253_1724943_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|631aa|down_4|CP012320.1_1724935_1726828_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_5|CP012320.1_1726841_1727102_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_6|CP012320.1_1727106_1727526_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_7|CP012320.1_1727526_1728576_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_8|CP012320.1_1728568_1729186_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|342aa|down_9|CP012320.1_1729197_1730223_+	pfam12571, DUF3751, Phage tail-collar fibre protein
GCA_003482035.1_ASM348203v1	CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	9	1857522-1858737	5,9,5	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	16,18,18	18	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|96aa|down_0|CP012320.1_1859145_1859433_+,NA|31aa|down_1|CP012320.1_1859457_1859550_+,NA|59aa|down_6|CP012320.1_1865820_1865997_-,NA|341aa|down_7|CP012320.1_1866571_1867594_+,NA|258aa|down_9|CP012320.1_1868500_1869274_+	NA|200aa|up_9|CP012320.1_1840347_1840947_-	COG4110, COG4110, Uncharacterized protein involved in stress response [General function prediction only]	NA|266aa|up_8|CP012320.1_1841049_1841847_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|329aa|up_7|CP012320.1_1842156_1843143_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_6|CP012320.1_1843626_1845357_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|825aa|up_5|CP012320.1_1846757_1849232_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_4|CP012320.1_1849231_1850689_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_3|CP012320.1_1851111_1853469_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_2|CP012320.1_1853554_1853872_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|252aa|up_1|CP012320.1_1854209_1854965_+	pfam12395, DUF3658, Protein of unknown function	NA|424aa|up_0|CP012320.1_1855603_1856875_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|96aa|down_0|CP012320.1_1859145_1859433_+	NA	NA|31aa|down_1|CP012320.1_1859457_1859550_+	NA	NA|184aa|down_2|CP012320.1_1859970_1860522_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_3|CP012320.1_1860712_1861675_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|615aa|down_4|CP012320.1_1861969_1863814_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|195aa|down_5|CP012320.1_1864135_1864720_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|59aa|down_6|CP012320.1_1865820_1865997_-	NA	NA|341aa|down_7|CP012320.1_1866571_1867594_+	NA	NA|296aa|down_8|CP012320.1_1867607_1868495_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_9|CP012320.1_1868500_1869274_+	NA
GCA_003482035.1_ASM348203v1	CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	10	2208041-2208724	6,10,6	CRT,CRISPRCasFinder,PILER-CR	no		csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTACATTCCATATAGTTAATATAAAAC,CTTTACATTCCATATAGTTAATATAAAAC,GTTTTATATTAACTATATGGAATGTAAAG	28,29,29	0	0	NA	NA	I-A:I-A:I-A	10,9,8	10	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|95aa|up_0|CP012320.1_2207645_2207930_-,NA|206aa|down_7|CP012320.1_2217343_2217961_-,NA|567aa|down_8|CP012320.1_2218130_2219831_-,NA|188aa|down_9|CP012320.1_2220227_2220791_-	NA|287aa|up_9|CP012320.1_2197880_2198741_-	cd04250, AAK_NAGK-C, AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis	NA|406aa|up_8|CP012320.1_2198755_2199973_-	cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ	NA|345aa|up_7|CP012320.1_2200014_2201049_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|255aa|up_6|CP012320.1_2201738_2202503_-	pfam14268, YoaP, YoaP-like	NA|158aa|up_5|CP012320.1_2202805_2203279_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|186aa|up_4|CP012320.1_2203647_2204205_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|233aa|up_3|CP012320.1_2204462_2205161_+	TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family	NA|156aa|up_2|CP012320.1_2206182_2206650_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|72aa|up_1|CP012320.1_2206660_2206876_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|95aa|up_0|CP012320.1_2207645_2207930_-	NA	NA|291aa|down_0|CP012320.1_2209554_2210427_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|193aa|down_1|CP012320.1_2210820_2211399_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|239aa|down_2|CP012320.1_2211456_2212173_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|362aa|down_3|CP012320.1_2212363_2213449_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|220aa|down_4|CP012320.1_2213603_2214263_-	pfam03154, Atrophin-1, Atrophin-1 family	NA|431aa|down_5|CP012320.1_2214479_2215772_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|398aa|down_6|CP012320.1_2215789_2216983_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|206aa|down_7|CP012320.1_2217343_2217961_-	NA	NA|567aa|down_8|CP012320.1_2218130_2219831_-	NA	NA|188aa|down_9|CP012320.1_2220227_2220791_-	NA
GCA_003482035.1_ASM348203v1	CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	11	2508440-2509391	11,7,7	CRISPRCasFinder,CRT,PILER-CR	no	c2c9_V-U4	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type V-U4	ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	14,14,13	14	TypeV-U4	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|138aa|up_7|CP012320.1_2504694_2505108_+,NA|99aa|up_6|CP012320.1_2505126_2505423_+,NA|106aa|up_5|CP012320.1_2505705_2506023_+,NA|155aa|up_4|CP012320.1_2506158_2506623_+,NA|54aa|up_3|CP012320.1_2506950_2507112_-,NA|132aa|up_2|CP012320.1_2507163_2507559_-,NA|51aa|up_0|CP012320.1_2508096_2508249_-,NA|51aa|down_1|CP012320.1_2510774_2510927_-,NA|111aa|down_2|CP012320.1_2511200_2511533_-,NA|85aa|down_3|CP012320.1_2511559_2511814_-	NA|125aa|up_9|CP012320.1_2503884_2504259_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|78aa|up_8|CP012320.1_2504477_2504711_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|138aa|up_7|CP012320.1_2504694_2505108_+	NA	NA|99aa|up_6|CP012320.1_2505126_2505423_+	NA	NA|106aa|up_5|CP012320.1_2505705_2506023_+	NA	NA|155aa|up_4|CP012320.1_2506158_2506623_+	NA	NA|54aa|up_3|CP012320.1_2506950_2507112_-	NA	NA|132aa|up_2|CP012320.1_2507163_2507559_-	NA	NA|122aa|up_1|CP012320.1_2507611_2507977_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|51aa|up_0|CP012320.1_2508096_2508249_-	NA	NA|308aa|down_0|CP012320.1_2509657_2510581_-	pfam09851, SHOCT, Short C-terminal domain	NA|51aa|down_1|CP012320.1_2510774_2510927_-	NA	NA|111aa|down_2|CP012320.1_2511200_2511533_-	NA	NA|85aa|down_3|CP012320.1_2511559_2511814_-	NA	c2c9_V-U4|98aa|down_4|CP012320.1_2512249_2512543_-	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain	NA|64aa|down_5|CP012320.1_2513241_2513433_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|126aa|down_6|CP012320.1_2513537_2513915_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|165aa|down_7|CP012320.1_2514718_2515213_+	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|78aa|down_8|CP012320.1_2516204_2516438_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|117aa|down_9|CP012320.1_2516599_2516950_+	pfam12676, DUF3796, Protein of unknown function (DUF3796)
GCA_003482035.1_ASM348203v1	CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	12	2676019-2676176	8	PILER-CR	no	cas3,cas5,cas7,cas6	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	AGGTTTAAGATTAACTAAGTGGATTTCA	28	0	0	NA	NA	NA	2	2	Unclear	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|492aa|down_3|CP012320.1_2680607_2682083_-	NA|448aa|up_9|CP012320.1_2668475_2669819_-	pfam06898, YqfD, Putative stage IV sporulation protein YqfD	NA|79aa|up_8|CP012320.1_2669831_2670068_-	pfam07873, YabP, YabP family	NA|188aa|up_7|CP012320.1_2670280_2670844_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_6|CP012320.1_2671036_2671534_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_5|CP012320.1_2671644_2672088_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_4|CP012320.1_2672117_2672297_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_3|CP012320.1_2672459_2672810_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_2|CP012320.1_2672852_2674151_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|253aa|up_1|CP012320.1_2674152_2674911_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|CP012320.1_2674929_2675877_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|CP012320.1_2676317_2678726_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|269aa|down_1|CP012320.1_2678752_2679559_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|338aa|down_2|CP012320.1_2679574_2680588_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|492aa|down_3|CP012320.1_2680607_2682083_-	NA	cas6|246aa|down_4|CP012320.1_2682087_2682825_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|370aa|down_5|CP012320.1_2683083_2684193_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_6|CP012320.1_2684222_2684990_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|458aa|down_7|CP012320.1_2685177_2686551_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|312aa|down_8|CP012320.1_2686586_2687522_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|385aa|down_9|CP012320.1_2688487_2689642_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional
GCA_003482035.1_ASM348203v1	CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	15	3287581-3289194	14,8,9	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	24,22,21	24	Unclear	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|67aa|up_7|CP012320.1_3280472_3280673_+,NA|260aa|up_1|CP012320.1_3285856_3286636_+,NA	NA|740aa|up_9|CP012320.1_3274819_3277039_-	cd01948, EAL, EAL domain	NA|885aa|up_8|CP012320.1_3277314_3279969_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|CP012320.1_3280472_3280673_+	NA	NA|197aa|up_6|CP012320.1_3280880_3281471_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|CP012320.1_3281473_3282349_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|CP012320.1_3282424_3283816_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|CP012320.1_3283819_3284956_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|CP012320.1_3284987_3285533_-	pfam02632, BioY, BioY family	NA|260aa|up_1|CP012320.1_3285856_3286636_+	NA	NA|143aa|up_0|CP012320.1_3287091_3287520_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|CP012320.1_3289377_3289644_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|CP012320.1_3289646_3290627_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|190aa|down_2|CP012320.1_3290629_3291199_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|CP012320.1_3291195_3293517_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|CP012320.1_3293527_3294229_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|CP012320.1_3294230_3295145_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|626aa|down_6|CP012320.1_3295146_3297024_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|246aa|down_7|CP012320.1_3297029_3297767_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|296aa|down_8|CP012320.1_3297844_3298732_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|CP012320.1_3299040_3300957_-	pfam02687, FtsX, FtsX-like permease family
GCA_003482035.1_ASM348203v1	CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	16	3544034-3544656	15,9,10	CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas3,cas7,cas6,cas5	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTATAACTAACTTAGTGTAATTTAAAC,ATTTATAACTAACTTAGTGTAATTTAAAC,ATTTATAACTAACTTAGTGTAATTTAAAC	29,29,29	0	0	NA	NA	NA:NA:NA	9,9,8	9	Unclear	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|243aa|up_9|CP012320.1_3533241_3533970_-,NA|540aa|up_8|CP012320.1_3533987_3535607_-,NA|110aa|up_2|CP012320.1_3541792_3542122_-,NA|389aa|down_2|CP012320.1_3547995_3549162_-,NA|91aa|down_6|CP012320.1_3552445_3552718_-,NA|248aa|down_8|CP012320.1_3554314_3555058_-,NA|105aa|down_9|CP012320.1_3555079_3555394_-	NA|243aa|up_9|CP012320.1_3533241_3533970_-	NA	NA|540aa|up_8|CP012320.1_3533987_3535607_-	NA	NA|337aa|up_7|CP012320.1_3535606_3536617_-	pfam09983, DUF2220, Uncharacterized protein conserved in bacteria C-term(DUF2220)	NA|67aa|up_6|CP012320.1_3537215_3537416_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|130aa|up_5|CP012320.1_3537517_3537907_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|431aa|up_4|CP012320.1_3538348_3539641_-	pfam03235, DUF262, Protein of unknown function DUF262	NA|401aa|up_3|CP012320.1_3539640_3540843_-	pfam08867, FRG, FRG domain	NA|110aa|up_2|CP012320.1_3541792_3542122_-	NA	NA|112aa|up_1|CP012320.1_3542185_3542521_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|149aa|up_0|CP012320.1_3542767_3543214_-	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas3|662aa|down_0|CP012320.1_3544908_3546894_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas7|357aa|down_1|CP012320.1_3546904_3547975_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	NA|389aa|down_2|CP012320.1_3547995_3549162_-	NA	cas6|255aa|down_3|CP012320.1_3549163_3549928_-	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas5|216aa|down_4|CP012320.1_3549918_3550566_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	NA|376aa|down_5|CP012320.1_3551045_3552173_-	COG3183, COG3183, Predicted restriction endonuclease [Defense mechanisms]	NA|91aa|down_6|CP012320.1_3552445_3552718_-	NA	NA|412aa|down_7|CP012320.1_3552967_3554203_-	TIGR00665, DnaB, replicative DNA helicase	NA|248aa|down_8|CP012320.1_3554314_3555058_-	NA	NA|105aa|down_9|CP012320.1_3555079_3555394_-	NA
