The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	4205365	285761	301947	4205365		Synechococcus_phage(23.08%)	14	NA	NA
AXU55747.1|285761_286274_-	nitroreductase	NA	A0A1V0E011	Clostridioides_phage	87.1	2.3e-83
AXU55748.1|286723_287200_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
AXU55749.1|287205_287904_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AXU55750.1|287915_289283_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
AXU55751.1|289276_290353_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
AXU55752.1|290346_290940_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
AXU55753.1|290932_292465_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AXU55754.1|292475_293726_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AXU55755.1|293750_297557_+	formylglycinamidine ribonucleotide synthetase	NA	A6N228	Microbacterium_phage	24.1	3.0e-31
AXU55756.1|297762_298635_+	dtdp-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	3.8e-14
AXU55757.1|298743_299625_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	61.9	8.2e-97
AXU55758.1|299661_300219_+	dtdp-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.0	1.3e-47
AXU55759.1|300256_301240_+	dtdp-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.9	9.2e-81
AXU55760.1|301278_301947_+	transglycosylase	NA	A0A0H3V0Q1	Geobacillus_virus	47.7	4.1e-24
>prophage 2
CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	4205365	441081	503248	4205365	transposase,integrase,tRNA	Geobacillus_virus(15.38%)	53	434124:434140	485686:485702
434124:434140	attL	TATAGTTTTATATTAGT	NA	NA	NA	NA
AXU55895.1|441081_442014_+|tRNA	D-aminoacyl-tRNA deacylase	tRNA	NA	NA	NA	NA
AXU55896.1|442068_442932_+	DMT family permease	NA	NA	NA	NA	NA
AXU55897.1|443178_445041_+	PTS system beta-glucoside-specific transporter subunit IIABC	NA	NA	NA	NA	NA
AXU55898.1|445043_446510_+	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
AXU55899.1|446533_447370_+	beta-glucoside bgl operon transcription antiterminator	NA	NA	NA	NA	NA
AXU55900.1|447750_447888_+	hypothetical protein	NA	NA	NA	NA	NA
AXU55901.1|447952_449536_+	asparagine synthetase	NA	NA	NA	NA	NA
AXU55902.1|449614_450211_-	radical SAM superfamily protein	NA	NA	NA	NA	NA
AXU55903.1|450237_450765_-	membrane spanning protein	NA	NA	NA	NA	NA
AXU55904.1|451126_452125_-	(R)-2-hydroxyisocaproate dehydrogenase	NA	M1I4S0	Paramecium_bursaria_Chlorella_virus	34.8	3.7e-45
AXU55905.1|452801_454001_+	isocaprenoyl-CoA:2-hydroxyisocaproate CoA-transferase	NA	NA	NA	NA	NA
AXU55906.1|454039_454840_+	activator of 2-hydroxyisocaproyl-CoA dehydratase	NA	NA	NA	NA	NA
AXU55907.1|454854_456081_+	subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase	NA	NA	NA	NA	NA
AXU55908.1|456080_457208_+	subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase	NA	NA	NA	NA	NA
AXU55909.1|457255_458389_+	acyl-CoA dehydrogenase, short-chain specific	NA	NA	NA	NA	NA
AXU55910.1|458421_459207_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA	NA
AXU55911.1|459225_460263_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AXU55912.1|460745_462377_+	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
AXU55913.1|462511_463438_-	fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
AXU55914.1|463767_464097_+	hypothetical protein	NA	NA	NA	NA	NA
AXU55915.1|464096_464309_+	pseudouridine synthase	NA	NA	NA	NA	NA
AXU55916.1|464956_466066_+|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	53.7	3.1e-109
AXU55917.1|466184_466703_+	pseudouridine synthase	NA	NA	NA	NA	NA
AXU55918.1|466735_468091_+|tRNA	tRNA (Uracil-5-)-methyltransferase	tRNA	A0A2K5B251	Erysipelothrix_phage	34.4	8.8e-58
AXU55919.1|468613_469648_+	hypothetical protein	NA	NA	NA	NA	NA
AXU55920.1|469734_469938_+	tetratricopeptide repeat protein	NA	A0A0A8WIL0	Clostridium_phage	74.1	1.5e-14
AXU55921.1|470108_471269_+	cell surface protein	NA	A0A2R2ZGK6	Clostridioides_phage	47.9	5.0e-70
AXU55922.1|471799_472699_-|integrase	integrase, catalytic region	integrase	A0A0C5AEA5	Paenibacillus_phage	60.7	2.7e-79
AXU55923.1|472692_473364_-|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	43.0	1.4e-43
AXU55924.1|474464_475838_+	arginine utilization sigma-54 dependent regulatory protein	NA	NA	NA	NA	NA
AXU55925.1|476093_477161_+	oxidoreductase	NA	NA	NA	NA	NA
AXU55926.1|477257_477566_+	2-amino-4-ketopentanoate thiolase subunit alpha	NA	NA	NA	NA	NA
AXU55927.1|477558_478989_+	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA	NA
AXU55928.1|479066_479441_+	D-ornithine aminomutase S component	NA	NA	NA	NA	NA
AXU55929.1|479434_481639_+	D-ornithine aminomutase E component	NA	NA	NA	NA	NA
AXU55930.1|481638_483048_+	component of D-ornithine aminomutase	NA	NA	NA	NA	NA
AXU55931.1|483032_484097_+	amino acid racemase	NA	NA	NA	NA	NA
AXU55932.1|484126_485548_+	Na+/H+ antiporter	NA	NA	NA	NA	NA
AXU55933.1|485976_486441_+	Transcriptional regulator, effector-binding domain/component	NA	NA	NA	NA	NA
485686:485702	attR	TATAGTTTTATATTAGT	NA	NA	NA	NA
AXU55934.1|486738_487101_+	Glyoxalase-like domain protein	NA	NA	NA	NA	NA
AXU55935.1|487695_488556_+	AraC family transcriptional regulator	NA	D0R0F8	Streptococcus_phage	32.1	2.9e-06
AXU55936.1|488813_490928_+	viral RNA helicase 1	NA	NA	NA	NA	NA
AXU55937.1|491189_493433_-	antibiotic resistance ABC transporter ATP-binding protein	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	34.6	4.7e-141
AXU55938.1|493764_494481_+	hypothetical protein	NA	NA	NA	NA	NA
AXU55939.1|494508_495447_+	beta-lactamase	NA	NA	NA	NA	NA
AXU55940.1|495790_496474_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.2	7.1e-32
AXU55941.1|496470_499131_+	ABC transporter permease	NA	NA	NA	NA	NA
AXU55942.1|499311_500493_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AXU55943.1|500492_501155_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	32.9	4.3e-26
AXU55944.1|501299_501833_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AXU55945.1|501959_502166_-|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	64.4	3.5e-19
AXU55946.1|502146_503070_-|transposase	transposase-like protein B	transposase	S6AND0	Bacillus_phage	52.4	5.4e-83
AXU55947.1|503080_503248_-|transposase	transposase-like protein A	transposase	NA	NA	NA	NA
>prophage 3
CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	4205365	613505	652404	4205365	coat,transposase,tRNA	Streptococcus_phage(37.5%)	31	NA	NA
AXU56042.1|613505_615425_+|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
AXU56043.1|616192_616624_+	hypothetical protein	NA	NA	NA	NA	NA
AXU56044.1|617278_618388_+|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	54.3	1.3e-110
AXU56045.1|618508_619093_+|transposase	PD-(D/E)XK nuclease family transposase	transposase	NA	NA	NA	NA
AXU56046.1|619385_620423_-	hypothetical protein	NA	NA	NA	NA	NA
AXU56047.1|620415_621102_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
AXU56048.1|621113_621434_-	transcriptional regulator	NA	NA	NA	NA	NA
AXU56049.1|621794_623135_+	two-component sensor histidine kinase	NA	X5JAC0	Clostridium_phage	38.8	2.4e-79
AXU56050.1|623812_624382_-	putative HD superfamily hydrolase	NA	NA	NA	NA	NA
AXU56051.1|624542_625793_-	efflux protein	NA	NA	NA	NA	NA
AXU56052.1|626084_626663_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AXU56053.1|626993_628454_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AXU56054.1|628827_629433_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AXU56055.1|629435_632003_+	PEP-utilizing kinase	NA	A0A1V0SGR7	Hokovirus	39.6	4.1e-48
AXU56056.1|632261_632753_-	signaling protein	NA	NA	NA	NA	NA
AXU56057.1|632706_632994_-	hypothetical protein	NA	NA	NA	NA	NA
AXU56058.1|633268_633544_+	hypothetical protein	NA	NA	NA	NA	NA
AXU56059.1|633563_633851_+	hypothetical protein	NA	NA	NA	NA	NA
AXU56060.1|634323_634758_+	hypothetical protein	NA	NA	NA	NA	NA
AXU56061.1|635405_636515_+|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	3.1e-109
AXU56062.1|636579_638703_+	hypothetical protein	NA	NA	NA	NA	NA
AXU56063.1|638717_643928_+	hypothetical protein	NA	NA	NA	NA	NA
AXU56064.1|644152_646252_-	cation transporting ATPase	NA	E4ZFI9	Streptococcus_phage	28.8	2.2e-68
AXU56065.1|646294_646690_-	hypothetical protein	NA	NA	NA	NA	NA
AXU56066.1|647750_647939_+	hypothetical protein	NA	NA	NA	NA	NA
AXU56067.1|648123_648564_-	hypothetical protein	NA	NA	NA	NA	NA
AXU56068.1|648899_650213_+	putative phosphoadenosine phosphosulfate sulfotransferase	NA	A0A220GKF8	Streptococcus_phage	41.0	1.6e-93
AXU56069.1|650230_650767_+	ParB-like nuclease domain protein	NA	A0A220GKT8	Streptococcus_phage	70.3	4.2e-64
AXU56070.1|651285_651507_+|coat	Spore coat associated protein JA (CotJA)	coat	NA	NA	NA	NA
AXU56071.1|651506_651770_+|coat	spore-coat protein	coat	NA	NA	NA	NA
AXU56072.1|651831_652404_+|coat	spore-coat protein	coat	NA	NA	NA	NA
>prophage 4
CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	4205365	1439998	1464389	4205365	tail	Clostridium_phage(54.55%)	29	NA	NA
AXU56749.1|1439998_1440199_+	cold shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AXU56750.1|1440619_1441048_+	regulatory protein	NA	NA	NA	NA	NA
AXU56751.1|1441190_1441946_-	peptidyl-prolyl isomerase	NA	NA	NA	NA	NA
AXU56752.1|1442066_1442483_-	hypothetical protein	NA	NA	NA	NA	NA
AXU56753.1|1442646_1443153_-	phage protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
AXU56754.1|1443234_1443555_-	phage repressor	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
AXU56755.1|1443723_1443921_+	phage regulatory protein	NA	NA	NA	NA	NA
AXU56756.1|1444025_1444466_+	DNA-binding protein	NA	A0A090EUN5	Clostridium_phage	51.4	4.6e-32
AXU56757.1|1444714_1445158_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	7.6e-19
AXU56758.1|1445162_1446227_+	phage-like element pbsx protein xkdK	NA	A0A1V0DZX4	Clostridioides_phage	52.8	2.6e-97
AXU56759.1|1446240_1446669_+	phage-like element pbsx protein XkdM	NA	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
AXU56760.1|1446782_1447229_+	Phage XkdN-like protein	NA	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
AXU56761.1|1447255_1447423_+	hypothetical protein	NA	NA	NA	NA	NA
AXU56762.1|1447422_1449876_+	phage protein	NA	A0A1V0DZX3	Clostridioides_phage	61.0	6.1e-17
AXU56763.1|1449875_1450298_+	phage-like element pbsx protein xkdP	NA	A0A090DBR9	Clostridium_phage	70.4	2.2e-52
AXU56764.1|1450579_1452109_+	phage cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
AXU56765.1|1452124_1452451_+	hypothetical protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
AXU56766.1|1452450_1452879_+	phage protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
AXU56767.1|1452871_1453924_+	phage protein	NA	A0A0A8WFP3	Clostridium_phage	71.3	9.3e-140
AXU56768.1|1453920_1454619_+	phage protein	NA	A0A090D815	Clostridium_phage	56.9	3.3e-48
AXU56769.1|1454619_1455606_+|tail	phage tail fiber protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
AXU56770.1|1455627_1460805_+	RCC1 domain-containing protein, alpha-tubulin suppressor	NA	A0A0A8WEY5	Clostridium_phage	28.3	8.2e-88
AXU56771.1|1460821_1461175_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	4.2e-12
AXU56772.1|1461437_1461698_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AXU56773.1|1461922_1462378_-	hypothetical protein	NA	NA	NA	NA	NA
AXU56774.1|1462605_1463025_-	phage regulatory protein	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
AXU56775.1|1463323_1463533_+	phage regulatory protein	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AXU56776.1|1463564_1463774_+	hypothetical protein	NA	NA	NA	NA	NA
AXU56777.1|1463990_1464389_-	phage regulatory protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 5
CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	4205365	1547081	1555626	4205365		Pandoravirus(33.33%)	10	NA	NA
AXU56849.1|1547081_1547666_+	para-aminobenzoate synthase glutamine amidotransferase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	4.2e-57
AXU56850.1|1547667_1549017_+	para-aminobenzoate synthase component I	NA	S4VNU7	Pandoravirus	41.2	2.9e-37
AXU56851.1|1549006_1549750_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AXU56852.1|1549783_1550485_+	hypothetical protein	NA	NA	NA	NA	NA
AXU56853.1|1550510_1551083_+	GTP cyclohydrolase I	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
AXU56854.1|1551148_1551940_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	28.6	1.8e-23
AXU56855.1|1551950_1552316_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AXU56856.1|1552308_1552815_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	NA	NA	NA	NA	NA
AXU56857.1|1552795_1553581_+	chorismate biosynthesis-like protein	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.0e-13
AXU56858.1|1553835_1555626_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.8	5.6e-52
>prophage 6
CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	4205365	1683041	1738529	4205365	terminase,capsid,tail,portal,holin	Clostridium_phage(78.95%)	69	NA	NA
AXU56972.1|1683041_1684172_-	prophage lambdaba04, site-specific recombinase	NA	A0A0A8WIE1	Clostridium_phage	99.7	2.9e-216
AXU56973.1|1684250_1684958_-	hiran domain family protein	NA	NA	NA	NA	NA
AXU56974.1|1684970_1685840_-	HipA-like protein	NA	NA	NA	NA	NA
AXU56975.1|1686459_1686966_-	putative Zn peptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
AXU56976.1|1687041_1687590_-	phage regulatory protein	NA	A0A0A8WJ60	Clostridium_phage	98.4	2.2e-92
AXU56977.1|1687601_1687943_-	phage repressor	NA	A0A0A8WE28	Clostridium_phage	100.0	7.6e-59
AXU56978.1|1688119_1688323_+	DNA-binding protein	NA	A0A0A8WHR3	Clostridium_phage	100.0	3.7e-29
AXU56979.1|1688370_1689180_+	anti-repressor	NA	A0A0A8WIE3	Clostridium_phage	97.4	1.0e-146
AXU56980.1|1689226_1689436_+	hypothetical protein	NA	NA	NA	NA	NA
AXU56981.1|1689445_1689820_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
AXU56982.1|1689895_1690093_+	phage regulatory protein	NA	A0A0A8WE47	Clostridium_phage	92.3	2.9e-26
AXU56983.1|1690123_1690516_+	Helix-turn-helix domain protein	NA	A0A0A8WHS2	Clostridium_phage	93.0	9.6e-58
AXU56984.1|1690496_1690646_+	hypothetical protein	NA	A0A0A8WIF8	Clostridium_phage	89.4	4.2e-14
AXU56985.1|1690716_1691154_+	hypothetical protein	NA	NA	NA	NA	NA
AXU56986.1|1691165_1692332_+	phage-like protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.5e-117
AXU56987.1|1692346_1692682_+	hypothetical protein	NA	NA	NA	NA	NA
AXU56988.1|1692734_1693307_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AXU56989.1|1693329_1693902_+	phage-like protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
AXU56990.1|1693901_1695860_+	dna-directed dna polymerase i	NA	A0A0A7RTL3	Clostridium_phage	69.1	7.8e-265
AXU56991.1|1695871_1698289_+	virulence-associated protein e	NA	A0A0A7RTG3	Clostridium_phage	67.7	0.0e+00
AXU56992.1|1698254_1698398_+	hypothetical protein	NA	NA	NA	NA	NA
AXU56993.1|1698570_1698897_+	phage-like protein	NA	A0A2K5B272	Erysipelothrix_phage	55.4	8.7e-20
AXU56994.1|1698845_1700216_+	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	NA	A0A1S7FYY5	Listeria_phage	60.0	8.4e-157
AXU56995.1|1700369_1700849_+	sigma-70 region 4 type 2	NA	I2E8Y5	Clostridium_phage	51.0	4.4e-36
AXU56996.1|1701131_1701584_+	prophage antirepressor	NA	A0A0A8WJQ8	Clostridium_phage	94.1	1.1e-68
AXU56997.1|1701875_1702850_+	hypothetical protein	NA	NA	NA	NA	NA
AXU56998.1|1702870_1703380_+	hypothetical protein	NA	NA	NA	NA	NA
AXU56999.1|1703449_1704142_+	phage DNA-binding protein	NA	A0A0A8WFS6	Clostridium_phage	97.0	7.0e-120
AXU57000.1|1704119_1705373_+|terminase	phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	98.3	1.2e-245
AXU57001.1|1705378_1706821_+|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	97.7	3.0e-274
AXU57002.1|1706810_1708346_+	phage protein	NA	X5JAI9	Clostridium_phage	71.9	2.5e-194
AXU57003.1|1708347_1708596_+	hypothetical protein	NA	NA	NA	NA	NA
AXU57004.1|1708663_1709227_+	phage scaffold protein	NA	A0A0A8WFU8	Clostridium_phage	93.6	6.0e-85
AXU57005.1|1709238_1710129_+|capsid	phage major capsid protein	capsid	X5J9Z5	Clostridium_phage	99.3	1.4e-165
AXU57006.1|1710147_1710381_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	93.5	4.6e-31
AXU57007.1|1710390_1710792_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
AXU57008.1|1710785_1711133_+	phage protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
AXU57009.1|1711132_1711423_+	phage protein	NA	A0A0A8WFV8	Clostridium_phage	96.7	4.1e-45
AXU57010.1|1711532_1712339_+	hypothetical protein	NA	F8UBL7	Clostridium_phage	48.0	2.4e-47
AXU57011.1|1712687_1713125_+	phage protein	NA	A0A0A8WJT3	Clostridium_phage	95.2	3.3e-75
AXU57012.1|1713108_1713294_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	91.4	1.5e-21
AXU57013.1|1713294_1714605_+	phage protein	NA	X5JAJ1	Clostridium_phage	92.7	8.1e-234
AXU57014.1|1714621_1715092_+	phage protein	NA	A0A0A8WJ62	Clostridium_phage	81.3	1.3e-69
AXU57015.1|1715150_1715978_+	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	48.3	1.8e-45
AXU57016.1|1716049_1716490_+	phage protein	NA	X5JAB6	Clostridium_phage	63.7	8.6e-47
AXU57017.1|1717338_1717443_+	hypothetical protein	NA	A0A090D809	Clostridium_phage	73.5	1.9e-05
AXU57018.1|1718635_1719502_+	prophage antirepressor-related protein	NA	X5JAW1	Clostridium_phage	80.1	3.2e-130
AXU57019.1|1719554_1719689_+	hypothetical protein	NA	NA	NA	NA	NA
AXU57020.1|1720366_1720894_+	Telomeric repeat-binding factor 2	NA	A0A0A8WJ63	Clostridium_phage	97.1	8.7e-62
AXU57021.1|1721031_1721799_+	hypothetical protein	NA	X5JB37	Clostridium_phage	44.4	6.3e-45
AXU57022.1|1721864_1724237_+|tail	phage tail tape measure protein	tail	X5JAB7	Clostridium_phage	41.5	8.8e-146
AXU57023.1|1724253_1724943_+	phage cell wall hydrolase	NA	X5J9Z8	Clostridium_phage	94.8	2.0e-119
AXU57024.1|1724935_1726828_+	phage cell wall hydrolase	NA	A3QSB3	Clostridium_virus	94.8	0.0e+00
AXU57025.1|1726841_1727102_+	phage protein	NA	A0A0A8WJ65	Clostridium_phage	86.0	1.4e-33
AXU57026.1|1727106_1727526_+	phage protein	NA	A0A0A8WJV8	Clostridium_phage	95.7	1.3e-71
AXU57027.1|1727526_1728576_+	phage protein	NA	A0A0A8WFK0	Clostridium_phage	94.8	1.0e-186
AXU57028.1|1728568_1729186_+	phage protein	NA	A0A0A8WII4	Clostridium_phage	98.0	8.8e-114
AXU57029.1|1729197_1730223_+|tail	phage tail fiber protein	tail	A3QSB7	Clostridium_virus	87.8	9.1e-140
AXU57030.1|1730239_1731766_+	hypothetical protein	NA	B6SBV0	Clostridium_virus	60.8	1.3e-89
AXU57031.1|1731780_1732074_+	hypothetical protein	NA	E2ELK3	Clostridium_phage	77.9	2.2e-38
AXU57032.1|1732073_1732256_+	hypothetical protein	NA	A3QSC3	Clostridium_virus	95.0	5.5e-24
AXU57033.1|1732289_1732856_+	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	77.8	3.6e-37
AXU57034.1|1732886_1733177_+	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	95.8	6.9e-45
AXU57035.1|1733180_1733438_+|holin	holin	holin	A3QSC5	Clostridium_virus	100.0	1.1e-41
AXU57036.1|1733698_1734562_+	AbiF-like protein	NA	A3QSC6	Clostridium_virus	99.7	8.4e-163
AXU57037.1|1734640_1735453_+	N-acetylmuramoyl-l-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
AXU57038.1|1735546_1737946_+	penicillin-binding protein	NA	NA	NA	NA	NA
AXU57039.1|1737986_1738163_-	putative PemI	NA	A0A0A8WHQ4	Clostridium_phage	63.8	4.2e-13
AXU57040.1|1738400_1738529_-	hypothetical protein	NA	A0A0A8WEJ5	Clostridium_phage	95.2	5.8e-12
>prophage 7
CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	4205365	2507611	2513915	4205365	transposase	Clostridium_phage(66.67%)	9	NA	NA
AXU57729.1|2507611_2507977_-	phage-related regulatory protein	NA	A0A2R2ZGW3	Clostridioides_phage	67.5	1.1e-39
AXU57730.1|2508096_2508249_-	hypothetical protein	NA	X5JAJ2	Clostridium_phage	57.1	4.8e-05
AXU57731.1|2509657_2510581_-	hypothetical protein	NA	NA	NA	NA	NA
AXU57732.1|2510774_2510927_-	hypothetical protein	NA	J9QED5	Clostridium_phage	52.0	9.6e-06
AXU57733.1|2511200_2511533_-	hypothetical protein	NA	NA	NA	NA	NA
AXU57734.1|2511559_2511814_-	hypothetical protein	NA	NA	NA	NA	NA
AXU57735.1|2512249_2512543_-|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	62.8	3.6e-33
AXU57736.1|2513241_2513433_-	repressor	NA	A0A0A8WFF9	Clostridium_phage	68.9	1.9e-14
AXU57737.1|2513537_2513915_-	regulatory protein	NA	A0A0A8WJU1	Clostridium_phage	89.6	6.9e-53
>prophage 8
CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	4205365	2617749	2667365	4205365	coat,protease,transposase,tRNA	Clostridium_phage(16.67%)	46	NA	NA
AXU57836.1|2617749_2617959_+|coat	Spore coat associated protein JA (CotJA)	coat	NA	NA	NA	NA
AXU57837.1|2617958_2618225_+|coat	spore-coat protein	coat	NA	NA	NA	NA
AXU57838.1|2618253_2618826_+|coat	spore-coat protein	coat	NA	NA	NA	NA
AXU57839.1|2619059_2620250_-	cell wall hydrolase	NA	A0A0K2SUC1	Clostridium_phage	50.7	1.7e-28
AXU57840.1|2620509_2620941_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	A0A1L2BX65	Bacteriophage	51.0	4.6e-37
AXU57841.1|2621053_2623282_+	DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	29.0	1.1e-28
AXU57842.1|2623392_2623878_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AXU57843.1|2624129_2625353_+	lipoprotein	NA	NA	NA	NA	NA
AXU57844.1|2625356_2628491_+	multidrug efflux pump, membrane protein	NA	S5VTK5	Leptospira_phage	26.8	1.6e-110
AXU57845.1|2628512_2629823_+	multidrug efflux pump, outer membrane protein	NA	NA	NA	NA	NA
AXU57846.1|2630032_2630860_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	35.9	5.2e-37
AXU57847.1|2630886_2631204_-|transposase	transposase	transposase	NA	NA	NA	NA
AXU57848.1|2631415_2631661_-	Double zinc ribbon	NA	NA	NA	NA	NA
AXU57849.1|2631874_2634502_-	pyruvate phosphate dikinase	NA	H8YJB7	Vibrio_phage	41.0	4.3e-93
AXU57850.1|2634562_2635399_-	positive regulator of gluconeogenesis	NA	NA	NA	NA	NA
AXU57851.1|2635411_2636050_-	transcriptional regulator	NA	NA	NA	NA	NA
AXU57852.1|2636485_2637778_-	putative homoserine dehydrogenase	NA	NA	NA	NA	NA
AXU57853.1|2637814_2638171_-	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
AXU57854.1|2638205_2638565_-	glucitol operon activator protein	NA	NA	NA	NA	NA
AXU57855.1|2638633_2640607_-	transcription antiterminator	NA	NA	NA	NA	NA
AXU57856.1|2640828_2641842_-	PTS system glucitol/sorbitol-specific transporter subunit IIBC	NA	NA	NA	NA	NA
AXU57857.1|2641854_2642400_-	PTS system glucitol/sorbitol-specific transporter subunit IIc2	NA	NA	NA	NA	NA
AXU57858.1|2642775_2643645_-	AraC family transcription regulator	NA	NA	NA	NA	NA
AXU57859.1|2643796_2644912_-	choloylglycine hydrolase	NA	NA	NA	NA	NA
AXU57860.1|2645147_2646284_-	peptidase	NA	NA	NA	NA	NA
AXU57861.1|2646339_2647803_-	sodium/proton-dependent alanine carrier protein	NA	NA	NA	NA	NA
AXU57862.1|2648378_2649641_-	transporter	NA	NA	NA	NA	NA
AXU57863.1|2649664_2650873_-	aminotransferase	NA	NA	NA	NA	NA
AXU57864.1|2650902_2651796_-	phosphate butyryltransferase	NA	NA	NA	NA	NA
AXU57865.1|2651813_2652872_-	butyrate kinase	NA	NA	NA	NA	NA
AXU57866.1|2653028_2653568_-	oxidoreductase subunit	NA	NA	NA	NA	NA
AXU57867.1|2653580_2654300_-	oxidoreductase subunit	NA	NA	NA	NA	NA
AXU57868.1|2654302_2655379_-	oxidoreductase subunit	NA	NA	NA	NA	NA
AXU57869.1|2655407_2655605_-	oxidoreductase ferredoxin subunit	NA	NA	NA	NA	NA
AXU57870.1|2655887_2656655_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AXU57871.1|2656934_2658482_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
AXU57872.1|2658647_2660714_-|tRNA	glycyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
AXU57873.1|2660713_2661592_-|tRNA	glycyl-tRNA synthetase subunit alpha	tRNA	NA	NA	NA	NA
AXU57874.1|2661751_2662354_-	ubiquitin-associated-domain-containing protein	NA	NA	NA	NA	NA
AXU57875.1|2662343_2663117_-	DNA repair protein	NA	NA	NA	NA	NA
AXU57876.1|2663082_2663238_-	hypothetical protein	NA	NA	NA	NA	NA
AXU57877.1|2663310_2664690_-	Mg2+ transporter	NA	NA	NA	NA	NA
AXU57878.1|2664701_2665595_-	GTP-binding protein Era	NA	NA	NA	NA	NA
AXU57879.1|2665658_2666060_-	cytidine deaminase	NA	NA	NA	NA	NA
AXU57880.1|2666178_2666898_-	membrane-associated kinase and phosphatase	NA	NA	NA	NA	NA
AXU57881.1|2666903_2667365_-|protease	metalloprotease	protease	NA	NA	NA	NA
>prophage 9
CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	4205365	3062978	3071931	4205365		Catovirus(50.0%)	8	NA	NA
AXU58207.1|3062978_3064892_-	capsular polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
AXU58208.1|3064975_3066067_-	capsular polysaccharide biosynthesis glycosyl transferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
AXU58209.1|3066072_3067368_-	UDP-glucose 6-dehydrogenase	NA	A0A127AXI2	Bacillus_phage	43.6	3.7e-90
AXU58210.1|3067393_3068146_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
AXU58211.1|3068193_3069102_-	beta-glycosyltransferase	NA	NA	NA	NA	NA
AXU58212.1|3069123_3069873_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
AXU58213.1|3069901_3071077_-	minor teichoic acid biosynthesis protein	NA	NA	NA	NA	NA
AXU58214.1|3071091_3071931_-	glycosyl transferase	NA	A0A2P1ELT8	Moumouvirus	26.3	5.3e-05
>prophage 10
CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	4205365	3155120	3179200	4205365	integrase	Streptococcus_phage(86.36%)	32	3152848:3152862	3160481:3160495
3152848:3152862	attL	AGAATATTTTATATT	NA	NA	NA	NA
AXU58275.1|3155120_3156566_-|integrase	integrase	integrase	A0A0A8WIF9	Clostridium_phage	23.9	3.5e-12
AXU58276.1|3156584_3156842_-	excisionase	NA	NA	NA	NA	NA
AXU58277.1|3157236_3157485_-	conjugative transposon excisionase	NA	NA	NA	NA	NA
AXU58278.1|3157491_3157908_-	conjugative transposon protein	NA	A0A1S5SEW0	Streptococcus_phage	38.0	3.8e-20
AXU58279.1|3158355_3159234_-	plasmid replication protein	NA	A0A1X9I765	Streptococcus_phage	97.8	1.2e-148
AXU58280.1|3159766_3160504_-	rRNA adenine N-6-methyltransferase	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
3160481:3160495	attR	AGAATATTTTATATT	NA	NA	NA	NA
AXU58281.1|3160550_3160970_-	plasmid protein	NA	NA	NA	NA	NA
AXU58282.1|3161021_3161180_-	UDP-N-acetylglucosamine kinase	NA	NA	NA	NA	NA
AXU58283.1|3161181_3161454_-	Antitoxin epsilon	NA	A0A1X9I6E5	Streptococcus_phage	100.0	5.0e-05
AXU58284.1|3161470_3161680_-	Omega Transcriptional Repressor	NA	A0A1X9I6D5	Streptococcus_phage	100.0	6.3e-32
AXU58285.1|3161872_3162232_+	transposon-related DNA-binding protein	NA	A0A1S5SFA6	Streptococcus_phage	45.0	2.3e-21
AXU58286.1|3162339_3162528_-	conjugative transposon protein	NA	D0R0F6	Streptococcus_phage	57.9	8.2e-15
AXU58287.1|3162732_3162924_-	hypothetical protein	NA	NA	NA	NA	NA
AXU58288.1|3162936_3163581_-	ABC transporter permease	NA	NA	NA	NA	NA
AXU58289.1|3163577_3164441_-	transporter	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	3.3e-18
AXU58290.1|3164441_3164819_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXU58291.1|3164939_3165851_-	conjugative transposon protein	NA	A0A1S5SF22	Streptococcus_phage	52.8	1.2e-82
AXU58292.1|3165866_3166874_-	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	69.9	3.0e-135
AXU58293.1|3166870_3169066_-	conjugative transposon protein	NA	A0A1S5SF30	Streptococcus_phage	68.6	4.4e-176
AXU58294.1|3169065_3171516_-	conjugative transposon protein	NA	A0A1S5SF64	Streptococcus_phage	76.1	0.0e+00
AXU58295.1|3171493_3171892_-	conjugative transposon protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	3.2e-48
AXU58296.1|3172009_3172513_-	conjugative transposon protein	NA	A0A1S5SF25	Streptococcus_phage	61.4	3.4e-55
AXU58297.1|3172530_3173034_-	conjugative tansposon protein	NA	NA	NA	NA	NA
AXU58298.1|3173333_3174110_-	Xre family transcriptional regulator	NA	W6LMS6	Streptococcus_phage	46.6	4.9e-05
AXU58299.1|3174313_3174535_-	conjugative transposon protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
AXU58300.1|3174535_3174670_-	conjugative transposon protein	NA	NA	NA	NA	NA
AXU58301.1|3174682_3175879_-	conjugative transposon replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	62.5	7.3e-149
AXU58302.1|3176062_3177457_-	conjugative transposon FtsK/SpoIIIE-like protein	NA	A0A1S5SFB5	Streptococcus_phage	66.2	1.9e-177
AXU58303.1|3177557_3177884_-	hypothetical protein	NA	NA	NA	NA	NA
AXU58304.1|3177899_3178307_-	DNA-binding protein	NA	A0A0A7AQV8	Bacillus_phage	42.3	1.2e-05
AXU58305.1|3178474_3178858_-	conjugative transposon protein	NA	A0A1S5SF96	Streptococcus_phage	57.6	5.2e-32
AXU58306.1|3178873_3179200_-	conjugative transposon protein	NA	A0A1S5SF38	Streptococcus_phage	51.5	2.0e-24
>prophage 11
CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	4205365	3727620	3787968	4205365	protease	Agrobacterium_phage(15.38%)	57	NA	NA
AXU58760.1|3727620_3728700_-|protease	protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	25.7	3.3e-15
AXU58761.1|3728855_3730205_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AXU58762.1|3730469_3732098_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
AXU58763.1|3732221_3733826_-	FAD-dependent dehydrogenase	NA	NA	NA	NA	NA
AXU58764.1|3733873_3734191_-	hypothetical protein	NA	NA	NA	NA	NA
AXU58765.1|3734195_3734561_-	hypothetical protein	NA	NA	NA	NA	NA
AXU58766.1|3734641_3735679_-	protein translocase	NA	NA	NA	NA	NA
AXU58767.1|3735931_3736516_-	hypothetical protein	NA	NA	NA	NA	NA
AXU58768.1|3736530_3736974_-	hypothetical protein	NA	NA	NA	NA	NA
AXU58769.1|3736974_3737847_-	fimbrial assembly protein	NA	NA	NA	NA	NA
AXU58770.1|3737899_3738259_-	type IV pilin	NA	NA	NA	NA	NA
AXU58771.1|3738312_3739398_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU58772.1|3739568_3740918_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU58773.1|3740940_3741621_-	membrane protein	NA	NA	NA	NA	NA
AXU58774.1|3742012_3743092_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
AXU58775.1|3743669_3745040_+	transporter	NA	NA	NA	NA	NA
AXU58776.1|3745304_3745916_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
AXU58777.1|3745905_3748269_-|protease	ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	44.5	3.7e-176
AXU58778.1|3748448_3748961_+	chromate transport protein	NA	NA	NA	NA	NA
AXU58779.1|3748948_3749476_+	chromate transport protein	NA	NA	NA	NA	NA
AXU58780.1|3749546_3750797_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.1	6.1e-146
AXU58781.1|3750815_3751400_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	58.8	9.3e-57
AXU58782.1|3751548_3752835_-	trigger factor	NA	NA	NA	NA	NA
AXU58783.1|3753028_3753499_-	phosphoesterase	NA	NA	NA	NA	NA
AXU58784.1|3753498_3754848_-	ribonuclease PH	NA	NA	NA	NA	NA
AXU58785.1|3755007_3757032_-	DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	37.6	3.8e-113
AXU58786.1|3757217_3758156_-	D-isomer specific 2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AXU58787.1|3758257_3758680_-	hypothetical protein	NA	NA	NA	NA	NA
AXU58788.1|3758867_3760151_+	transporter	NA	NA	NA	NA	NA
AXU58789.1|3760228_3760744_-	electron transport protein	NA	NA	NA	NA	NA
AXU58790.1|3760743_3762120_-	hydrogenase	NA	NA	NA	NA	NA
AXU58791.1|3762144_3762696_-	electron transport protein	NA	NA	NA	NA	NA
AXU58792.1|3762753_3762969_-	hypothetical protein	NA	NA	NA	NA	NA
AXU58793.1|3762937_3763771_-	formate dehydrogenase accessory protein	NA	NA	NA	NA	NA
AXU58794.1|3766214_3767273_-	ABC transporter permease	NA	NA	NA	NA	NA
AXU58795.1|3767483_3768143_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	33.6	4.2e-29
AXU58796.1|3768453_3769083_+	hypothetical protein	NA	NA	NA	NA	NA
AXU58797.1|3769150_3769984_+	hypothetical protein	NA	NA	NA	NA	NA
AXU58798.1|3770079_3770868_-	hypothetical protein	NA	NA	NA	NA	NA
AXU58799.1|3770868_3771741_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.3	6.8e-27
AXU58800.1|3771755_3773465_-	hypothetical protein	NA	NA	NA	NA	NA
AXU58801.1|3773610_3774192_-	accessory gene regulator protein	NA	X5JB40	Clostridium_phage	30.4	3.8e-18
AXU58802.1|3774250_3774391_-	autoinducer prepeptide	NA	NA	NA	NA	NA
AXU58803.1|3774402_3775719_-	sensor histidine kinase VirS	NA	X5JAC0	Clostridium_phage	32.9	7.5e-54
AXU58804.1|3775712_3776423_-	LytR family DNA-binding response regulator	NA	A0A2R2ZGH8	Clostridioides_phage	36.2	1.3e-28
AXU58805.1|3776860_3777436_-	hypothetical protein	NA	NA	NA	NA	NA
AXU58806.1|3777728_3778007_-	Mor transcription activator domain-containing protein	NA	NA	NA	NA	NA
AXU58807.1|3778315_3779077_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
AXU58808.1|3779245_3781273_-	exosporium glycoprotein	NA	A0A285PXU9	Cedratvirus	64.5	1.6e-39
AXU58809.1|3781351_3782428_-	glycosyl transferase	NA	A0A1V0SAJ8	Catovirus	25.1	6.6e-16
AXU58810.1|3782749_3783334_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	51.3	3.6e-48
AXU58811.1|3783330_3783813_-	AraC family transcription regulator	NA	NA	NA	NA	NA
AXU58812.1|3784011_3785427_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXU58813.1|3785541_3786210_+	B3/4 domain protein	NA	NA	NA	NA	NA
AXU58814.1|3786385_3786904_-	nitroreductase	NA	NA	NA	NA	NA
AXU58815.1|3787055_3787379_+	transcriptional regulator	NA	NA	NA	NA	NA
AXU58816.1|3787383_3787968_-|protease	protease	protease	NA	NA	NA	NA
>prophage 12
CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	4205365	3932897	3944662	4205365	protease,portal,transposase	Clostridioides_phage(60.0%)	14	NA	NA
AXU58934.1|3932897_3933086_+	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	96.8	5.3e-22
AXU58935.1|3933280_3933838_+	transposon Tn21 resolvase	NA	A0A1V0E035	Clostridioides_phage	97.8	4.1e-94
AXU58936.1|3935971_3937177_+|portal	phage portal protein	portal	A0A1V0DZW8	Clostridioides_phage	95.0	2.0e-210
AXU58937.1|3937154_3937322_+	phage-related cell wall hydrolase	NA	A0A0A8WIC2	Clostridium_phage	97.4	3.6e-14
AXU58938.1|3937392_3937575_+	N-acetylmuramoyl-l-alanine amidase	NA	A0A0A8WJ04	Clostridium_phage	91.5	9.7e-21
AXU58939.1|3937705_3938149_-	hypothetical protein	NA	A0A1V0DZZ2	Clostridioides_phage	82.6	4.3e-62
AXU58940.1|3938366_3938810_-	hypothetical protein	NA	NA	NA	NA	NA
AXU58941.1|3938831_3939149_-	hypothetical protein	NA	NA	NA	NA	NA
AXU58942.1|3939338_3940040_-	hypothetical protein	NA	A0A1V0DZZ4	Clostridioides_phage	77.5	1.4e-94
AXU58943.1|3940032_3940575_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1V0DZZ1	Clostridioides_phage	96.7	3.8e-89
AXU58944.1|3940814_3940997_-	hypothetical protein	NA	NA	NA	NA	NA
AXU58945.1|3941024_3941636_-	leucine-rich repeat protein	NA	NA	NA	NA	NA
AXU58946.1|3942112_3943327_-|transposase	transposase mutator type	transposase	A0A218MNI5	uncultured_virus	50.8	7.9e-50
AXU58947.1|3943513_3944662_-|protease	exported carboxy-terminal processing protease	protease	A0A0R6PIZ1	Moraxella_phage	28.5	8.3e-17
>prophage 13
CP012320	Clostridioides difficile strain DSM 28196 chromosome, complete genome	4205365	4116396	4131819	4205365		Streptococcus_phage(92.31%)	18	NA	NA
AXU59113.1|4116396_4116720_+	conjugative transposon protein	NA	A0A1S5SF38	Streptococcus_phage	73.5	1.7e-39
AXU59114.1|4116734_4117118_+	conjugative transposon protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	6.3e-38
AXU59115.1|4117213_4117627_+	hypothetical protein	NA	NA	NA	NA	NA
AXU59116.1|4117733_4118192_+	glyoxalase/bleomycin resistance protein/dioxygenase	NA	NA	NA	NA	NA
AXU59117.1|4118216_4118759_+	hypothetical protein	NA	NA	NA	NA	NA
AXU59118.1|4118755_4119322_+	hypothetical protein	NA	NA	NA	NA	NA
AXU59119.1|4119431_4120826_+	conjugative transposon FtsK/SpoIIIE-like protein	NA	A0A1S5SFB5	Streptococcus_phage	66.8	1.3e-178
AXU59120.1|4121105_4122227_+	conjugative transposon replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	62.7	1.3e-134
AXU59121.1|4122233_4122368_+	conjugative transposon protein	NA	NA	NA	NA	NA
AXU59122.1|4122368_4122590_+	conjugative transposon protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	1.2e-28
AXU59123.1|4122909_4123548_+	chloramphenicol o-acetyltransferase	NA	G3CFL0	Escherichia_phage	35.3	7.6e-36
AXU59124.1|4123833_4124331_+	conjugative transposon protein	NA	A0A1S5SF25	Streptococcus_phage	41.2	1.3e-27
AXU59125.1|4124346_4124850_+	conjugative transposon protein	NA	A0A1S5SF25	Streptococcus_phage	47.6	4.4e-39
AXU59126.1|4124962_4125352_+	conjugative transposon protein	NA	A0A1S5SEX7	Streptococcus_phage	73.8	8.1e-49
AXU59127.1|4125338_4127771_+	conjugative transposon protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
AXU59128.1|4127770_4129906_+	conjugative transposon protein	NA	A0A1S5SF30	Streptococcus_phage	58.6	1.3e-177
AXU59129.1|4129902_4130910_+	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	67.3	6.4e-130
AXU59130.1|4130925_4131819_+	conjugative transposon protein	NA	A0A1S5SF22	Streptococcus_phage	53.0	1.6e-79
