The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	4122585	248336	327574	4122585	protease,transposase,coat,holin	Streptococcus_phage(33.33%)	69	NA	NA
AXU59399.1|248336_248927_+|protease	membrane-associated metalloprotease	protease	NA	NA	NA	NA
AXU59400.1|249256_250390_+|protease	membrane-associated metalloprotease	protease	NA	NA	NA	NA
AXU59401.1|251305_252328_+	cell wall hydrolase	NA	A0A0A8WF62	Clostridium_phage	55.8	4.3e-33
AXU59402.1|252623_253544_+	aspartate carbamoyltransferase catalytic chain	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	42.5	7.1e-59
AXU59403.1|253582_254275_+	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA	NA
AXU59404.1|254267_255170_+	dihydroorotate dehydrogenase 1B	NA	NA	NA	NA	NA
AXU59405.1|255254_255839_+	orotate phosphoribosyltransferase	NA	Q58MW1	Prochlorococcus_phage	28.1	2.2e-05
AXU59406.1|256053_256980_+	ketopantoate reductase	NA	NA	NA	NA	NA
AXU59407.1|257031_257922_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXU59408.1|258109_259141_+	membrane protein	NA	NA	NA	NA	NA
AXU59409.1|259434_260310_+	DNA glycosylase	NA	NA	NA	NA	NA
AXU59410.1|260327_261818_+	cardiolipin synthetase	NA	NA	NA	NA	NA
AXU59411.1|262010_262295_+	10 kDa chaperonin	NA	A0A221S4A8	uncultured_virus	42.6	1.4e-13
AXU59412.1|262327_263956_+	60 kDa chaperonin	NA	A0A240F779	uncultured_virus	55.7	5.8e-157
AXU59413.1|264217_264958_+	NCAIR mutase-like protein	NA	A0A288TYA6	Enterococcus_phage	44.8	4.0e-20
AXU59414.1|265041_265776_+	hypothetical protein	NA	NA	NA	NA	NA
AXU59415.1|265805_266225_+	hypothetical protein	NA	NA	NA	NA	NA
AXU59416.1|266606_268142_+	GMP synthase	NA	A0A1V0SH76	Hokovirus	33.7	1.2e-23
AXU59417.1|268680_270111_+	membrane-associated nucleotidase	NA	NA	NA	NA	NA
AXU59418.1|270258_270567_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXU59419.1|270603_271125_+	chromate transporter	NA	NA	NA	NA	NA
AXU59420.1|271244_272921_-	recombinase	NA	A0A288WG52	Bacillus_phage	32.0	1.6e-29
AXU59421.1|273015_273168_-	hypothetical protein	NA	NA	NA	NA	NA
AXU59422.1|273624_273864_-	conjugative transposon protein	NA	A0A1S5SEX1	Streptococcus_phage	69.7	3.6e-23
AXU59423.1|273860_274280_-	conjugative transposon regulatory protein	NA	A0A1S5SEW0	Streptococcus_phage	56.2	1.2e-37
AXU59424.1|274732_275194_-	hypothetical protein	NA	NA	NA	NA	NA
AXU59425.1|275202_275982_-	lantibiotic ABC transporter permease	NA	NA	NA	NA	NA
AXU59426.1|275984_276770_-	lantibiotic ABC transporter permease	NA	NA	NA	NA	NA
AXU59427.1|276762_277689_-	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	44.2	2.1e-42
AXU59428.1|277826_278744_-	two-component sensor histidine kinase	NA	A0A2K9L114	Tupanvirus	27.2	8.7e-09
AXU59429.1|278750_279443_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	34.1	2.4e-35
AXU59430.1|279784_280162_+	conjugative transposon protein	NA	A0A1S5SFA6	Streptococcus_phage	46.7	8.5e-19
AXU59431.1|280220_281129_-	conjugative transposon exported protein	NA	A0A1S5SF22	Streptococcus_phage	66.8	2.9e-113
AXU59432.1|281145_282150_-	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	80.2	3.4e-139
AXU59433.1|282146_284528_-	conjugative transposon membrane protein	NA	A0A1S5SF30	Streptococcus_phage	81.0	2.1e-219
AXU59434.1|284527_285364_-	conjugative transposon ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	93.5	1.6e-142
AXU59435.1|285581_287408_-	group II intron reverse transcriptase/mutarase	NA	H7BVW2	unidentified_phage	26.8	3.7e-11
AXU59436.1|288104_289658_-	conjugative transposon ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	83.7	2.8e-241
AXU59437.1|289641_290088_-	conjugative transposon membrane protein	NA	A0A1S5SEX7	Streptococcus_phage	77.7	8.4e-58
AXU59438.1|290084_290480_-	hypothetical protein	NA	NA	NA	NA	NA
AXU59439.1|291018_292425_-	conjugative transposon replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	78.3	1.8e-186
AXU59440.1|292394_293792_-	conjugative transposon-related FtsK/SpoIII-relatd protein	NA	A0A1S5SFB5	Streptococcus_phage	77.7	2.9e-205
AXU59441.1|293830_294208_-	conjugative transposon protein	NA	A0A1S5SF96	Streptococcus_phage	79.7	5.1e-48
AXU59442.1|294389_294641_-	hypothetical protein	NA	NA	NA	NA	NA
AXU59443.1|294656_295724_-	DNA-cytosine methyltransferase	NA	A0A2K9V3X0	Faecalibacterium_phage	56.0	2.1e-30
AXU59444.1|296074_296908_-	Alpha/beta hydrolase family protein	NA	NA	NA	NA	NA
AXU59445.1|297092_300521_-	DNA repair protein	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	37.4	1.1e-176
AXU59446.1|300839_303074_+	signaling protein	NA	NA	NA	NA	NA
AXU59447.1|303329_305360_+	transcription antiterminator	NA	NA	NA	NA	NA
AXU59448.1|305356_305809_+	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
AXU59449.1|305810_306866_+	fructose-like permease EIIC subunit 2	NA	NA	NA	NA	NA
AXU59450.1|306932_307241_+	PTS system fructose-like transporter subunit EIIB	NA	NA	NA	NA	NA
AXU59451.1|307344_308610_+	sugar-phosphate kinase	NA	NA	NA	NA	NA
AXU59452.1|308697_309411_+	hydrolase	NA	NA	NA	NA	NA
AXU59453.1|309843_310569_+|holin	CTP:phosphocholine cytidylyltransferase	holin	NA	NA	NA	NA
AXU59454.1|310586_312650_+|holin	choline sulfatase	holin	NA	NA	NA	NA
AXU59455.1|312873_313167_-|coat	spore coat protein	coat	NA	NA	NA	NA
AXU59456.1|313172_313388_-	hypothetical protein	NA	NA	NA	NA	NA
AXU59457.1|313836_314235_+|transposase	transposase	transposase	A0A0A8WIU6	Clostridium_phage	96.2	2.5e-69
AXU59458.1|314231_315395_+|transposase	transposase	transposase	A0A0A8WI33	Clostridium_phage	99.0	1.7e-219
AXU59459.1|315778_316291_-	nitroreductase	NA	A0A1V0E011	Clostridioides_phage	87.6	3.5e-84
AXU59460.1|316740_317217_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
AXU59461.1|317222_317921_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AXU59462.1|317932_319300_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
AXU59463.1|319293_320370_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	2.2e-64
AXU59464.1|320363_320957_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	7.3e-25
AXU59465.1|320949_322482_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AXU59466.1|322492_323743_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AXU59467.1|323767_327574_+	formylglycinamidine ribonucleotide synthetase	NA	A6N228	Microbacterium_phage	24.5	1.0e-31
>prophage 2
CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	4122585	502160	522622	4122585	integrase	Streptococcus_phage(94.12%)	26	500701:500715	527659:527673
500701:500715	attL	TTTTATATATTTTTT	NA	NA	NA	NA
AXU59631.1|502160_503429_-|integrase	integrase	integrase	A0A1S5SEW7	Streptococcus_phage	67.3	1.5e-155
AXU59632.1|503428_503632_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	82.1	2.5e-25
AXU59633.1|504006_504246_-	conjugative transposon excisionase	NA	NA	NA	NA	NA
AXU59634.1|504238_504919_-	conjugative transposon protein	NA	A0A1S5SEW0	Streptococcus_phage	43.1	3.9e-22
AXU59635.1|504946_505171_-	hypothetical protein	NA	NA	NA	NA	NA
AXU59636.1|505202_505628_-	hypothetical protein	NA	NA	NA	NA	NA
AXU59637.1|506026_506290_+	plasmid protein	NA	A0A1X9I6D5	Streptococcus_phage	83.1	4.4e-22
AXU59638.1|506518_507256_+	rRNA adenine N-6-methyltransferase	NA	E4ZFQ0	Streptococcus_phage	99.2	7.0e-134
AXU59639.1|507863_508280_-	hypothetical protein	NA	NA	NA	NA	NA
AXU59640.1|508276_508480_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXU59641.1|508580_509492_-	conjugative transposon protein	NA	A0A1S5SF22	Streptococcus_phage	53.6	2.2e-84
AXU59642.1|509509_510517_-	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	67.6	6.4e-130
AXU59643.1|510513_512718_-	conjugative transposon protein	NA	A0A1S5SF30	Streptococcus_phage	51.1	1.6e-181
AXU59644.1|512717_515168_-	conjugative transposon protein	NA	A0A1S5SF64	Streptococcus_phage	76.4	0.0e+00
AXU59645.1|515145_515544_-	conjugative transposon protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	4.1e-48
AXU59646.1|515660_516164_-	conjugative transposon protein	NA	A0A1S5SF25	Streptococcus_phage	60.8	7.5e-55
AXU59647.1|516181_516685_-	conjugative tansposon protein	NA	NA	NA	NA	NA
AXU59648.1|517009_517630_-	hypothetical protein	NA	NA	NA	NA	NA
AXU59649.1|517719_517941_-	conjugative transposon protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
AXU59650.1|517941_518076_-	conjugative transposon protein	NA	NA	NA	NA	NA
AXU59651.1|518088_519285_-	conjugative transposon replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	62.3	4.7e-148
AXU59652.1|519468_520863_-	conjugative transposon FtsK/SpoIIIE-like protein	NA	A0A1S5SFB5	Streptococcus_phage	65.7	3.3e-177
AXU59653.1|520931_521135_-	transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	45.8	7.5e-06
AXU59654.1|521138_521780_-	hypothetical protein	NA	NA	NA	NA	NA
AXU59655.1|521896_522280_-	conjugative transposon protein	NA	A0A1S5SF96	Streptococcus_phage	55.9	2.3e-32
AXU59656.1|522295_522622_-	conjugative transposon protein	NA	A0A1S5SF38	Streptococcus_phage	52.4	1.5e-24
527659:527673	attR	AAAAAATATATAAAA	NA	NA	NA	NA
>prophage 3
CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	4122585	710070	759373	4122585	protease,transposase,coat,tRNA	Streptococcus_phage(44.44%)	36	NA	NA
AXU59811.1|710070_711990_+|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
AXU59812.1|712757_713849_+|transposase	PD-(D/E)XK nuclease family transposase	transposase	NA	NA	NA	NA
AXU59813.1|714514_715855_+	two-component sensor histidine kinase	NA	X5JAC0	Clostridium_phage	38.6	1.5e-78
AXU59814.1|716567_717137_-	putative HD superfamily hydrolase	NA	NA	NA	NA	NA
AXU59815.1|717297_718548_-	efflux protein	NA	NA	NA	NA	NA
AXU59816.1|718838_719417_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AXU59817.1|719754_721215_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AXU59818.1|721588_722194_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AXU59819.1|722196_724764_+	PEP-utilizing kinase	NA	A0A1V0SGR7	Hokovirus	39.2	9.2e-48
AXU59820.1|725187_725334_-	hypothetical protein	NA	NA	NA	NA	NA
AXU59821.1|725381_726611_-	signaling protein	NA	NA	NA	NA	NA
AXU59822.1|726612_727791_-	signaling protein	NA	G3MA91	Bacillus_virus	27.3	1.9e-08
AXU59823.1|728948_730415_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXU59824.1|730699_730879_+	hypothetical protein	NA	NA	NA	NA	NA
AXU59825.1|731515_731791_+	hypothetical protein	NA	NA	NA	NA	NA
AXU59826.1|731810_732098_+	hypothetical protein	NA	NA	NA	NA	NA
AXU59827.1|732790_735286_+	hypothetical protein	NA	NA	NA	NA	NA
AXU59828.1|735300_740511_+	hypothetical protein	NA	NA	NA	NA	NA
AXU59829.1|740735_742835_-	cation transporting ATPase	NA	E4ZFI9	Streptococcus_phage	29.5	1.7e-71
AXU59830.1|742877_743273_-	hypothetical protein	NA	NA	NA	NA	NA
AXU59831.1|744287_744476_+	hypothetical protein	NA	NA	NA	NA	NA
AXU59832.1|744659_745100_-	hypothetical protein	NA	NA	NA	NA	NA
AXU59833.1|745454_746768_+	putative phosphoadenosine phosphosulfate sulfotransferase	NA	A0A220GKF8	Streptococcus_phage	40.8	2.8e-93
AXU59834.1|746785_747322_+	ParB-like nuclease domain protein	NA	A0A220GKT8	Streptococcus_phage	69.7	1.2e-63
AXU59835.1|747837_748059_+|coat	Spore coat associated protein JA (CotJA)	coat	NA	NA	NA	NA
AXU59836.1|748058_748322_+|coat	spore-coat protein	coat	NA	NA	NA	NA
AXU59837.1|748383_748956_+|coat	spore-coat protein	coat	NA	NA	NA	NA
AXU59838.1|749832_750183_-	hypothetical protein	NA	NA	NA	NA	NA
AXU59839.1|750499_751033_+	methylated-DNA--protein-cysteine methyltransferase 1	NA	M1PFU9	Streptococcus_phage	49.4	1.2e-34
AXU59840.1|752045_752642_-	hypothetical protein	NA	NA	NA	NA	NA
AXU59841.1|753107_753521_+	hypothetical protein	NA	NA	NA	NA	NA
AXU59842.1|753593_754130_+	glutamate-rich protein GrpB	NA	NA	NA	NA	NA
AXU59843.1|754289_754955_+	chloride channel protein	NA	NA	NA	NA	NA
AXU59844.1|755609_756719_+|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	53.5	9.6e-111
AXU59845.1|756845_757748_+	Voltage gated chloride channel family protein	NA	NA	NA	NA	NA
AXU59846.1|758359_759373_+|protease	membrane-associated metalloprotease	protease	NA	NA	NA	NA
>prophage 4
CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	4122585	1475612	1499999	4122585	tail	Clostridium_phage(54.55%)	29	NA	NA
AXU60475.1|1475612_1475813_+	cold shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AXU60476.1|1476233_1476662_+	regulatory protein	NA	NA	NA	NA	NA
AXU60477.1|1476804_1477560_-	peptidyl-prolyl isomerase	NA	NA	NA	NA	NA
AXU60478.1|1477680_1478097_-	hypothetical protein	NA	NA	NA	NA	NA
AXU60479.1|1478260_1478767_-	phage protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
AXU60480.1|1478848_1479169_-	phage repressor	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
AXU60481.1|1479337_1479535_+	phage regulatory protein	NA	NA	NA	NA	NA
AXU60482.1|1479639_1480080_+	DNA-binding protein	NA	A0A090EUN5	Clostridium_phage	51.4	6.0e-32
AXU60483.1|1480328_1480772_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.1	2.2e-18
AXU60484.1|1480776_1481841_+	phage-like element pbsx protein xkdK	NA	A0A1V0DZX4	Clostridioides_phage	53.1	4.4e-97
AXU60485.1|1481854_1482283_+	phage-like element pbsx protein XkdM	NA	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
AXU60486.1|1482396_1482843_+	Phage XkdN-like protein	NA	A0A090EUD0	Clostridium_phage	36.0	8.2e-13
AXU60487.1|1482869_1483037_+	hypothetical protein	NA	NA	NA	NA	NA
AXU60488.1|1483036_1485490_+	phage protein	NA	A0A1V0DZX3	Clostridioides_phage	55.7	6.1e-17
AXU60489.1|1485489_1485912_+	phage-like element pbsx protein xkdP	NA	A0A090DBR9	Clostridium_phage	71.1	1.7e-52
AXU60490.1|1486193_1487723_+	phage cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	80.9	2.9e-243
AXU60491.1|1487738_1488065_+	hypothetical protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
AXU60492.1|1488064_1488493_+	phage protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
AXU60493.1|1488485_1489538_+	phage protein	NA	A0A0A8WFP3	Clostridium_phage	71.0	2.7e-139
AXU60494.1|1489534_1490233_+	phage protein	NA	A0A090D815	Clostridium_phage	56.9	5.5e-48
AXU60495.1|1490233_1491220_+|tail	phage tail fiber protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
AXU60496.1|1491241_1496419_+	RCC1 domain-containing protein, alpha-tubulin suppressor	NA	A0A0A8WEY5	Clostridium_phage	26.7	6.5e-77
AXU60497.1|1496435_1496789_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	7.2e-12
AXU60498.1|1497051_1497312_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AXU60499.1|1497532_1497988_-	hypothetical protein	NA	NA	NA	NA	NA
AXU60500.1|1498215_1498635_-	phage regulatory protein	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
AXU60501.1|1498933_1499143_+	phage regulatory protein	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AXU60502.1|1499174_1499384_+	hypothetical protein	NA	NA	NA	NA	NA
AXU60503.1|1499600_1499999_-	phage regulatory protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 5
CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	4122585	1580224	1589951	4122585		Pandoravirus(37.5%)	11	NA	NA
AXU60572.1|1580224_1580809_+	para-aminobenzoate synthase glutamine amidotransferase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	1.4e-57
AXU60573.1|1580810_1582160_+	para-aminobenzoate synthase component I	NA	S4VNU7	Pandoravirus	41.2	2.2e-37
AXU60574.1|1582149_1582893_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AXU60575.1|1582926_1583628_+	hypothetical protein	NA	NA	NA	NA	NA
AXU60576.1|1583653_1584226_+	GTP cyclohydrolase I	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
AXU60577.1|1584289_1585081_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	28.8	1.1e-23
AXU60578.1|1585091_1585457_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AXU60579.1|1585449_1585956_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	NA	S4VNV0	Pandoravirus	35.2	2.7e-12
AXU60580.1|1585936_1586722_+	chorismate biosynthesis-like protein	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.7e-13
AXU60581.1|1586976_1588767_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
AXU60582.1|1588784_1589951_+	RNA polymerase sigma factor (sigma-43)	NA	M4SMP8	Cyanophage	36.8	9.6e-37
>prophage 6
CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	4122585	1893900	1913981	4122585	integrase	Streptococcus_phage(89.47%)	19	1891465:1891478	1903343:1903356
1891465:1891478	attL	ATGTCTGATGAAAA	NA	NA	NA	NA
AXU60854.1|1893900_1895118_-|integrase	integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
AXU60855.1|1895199_1895403_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
AXU60856.1|1895863_1896094_-	conjugative transposon protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
AXU60857.1|1896090_1896513_-	conjugative transposon regulatory protein	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
AXU60858.1|1897017_1897371_+	conjugative transposon regulatory protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
AXU60859.1|1897716_1899636_-	conjugative transposon tetracycline resistance protein	NA	A0A2K5B2A5	Erysipelothrix_phage	97.3	0.0e+00
AXU60860.1|1899887_1900823_-	conjugative transposon exported protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	7.7e-170
AXU60861.1|1900819_1901821_-	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
AXU60862.1|1901817_1903995_-	conjugative transposon membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
1903343:1903356	attR	ATGTCTGATGAAAA	NA	NA	NA	NA
AXU60863.1|1903997_1904915_-	conjugative transposon ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	99.7	5.4e-168
AXU60864.1|1905048_1906875_-	group II intron reverse transcriptase/mutarase	NA	H7BVW2	unidentified_phage	26.8	3.7e-11
AXU60865.1|1907571_1908678_-	conjugative transposon ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	6.3e-187
AXU60866.1|1908726_1909125_-	conjugative transposon ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	4.2e-69
AXU60867.1|1909589_1910087_-	conjugative transposon protein	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
AXU60868.1|1910203_1910425_-	conjugative transposon protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
AXU60869.1|1910467_1911673_-	conjugative transposon replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
AXU60870.1|1911850_1913236_-	conjugative transposon FtsK/SpoIIIE family protein	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
AXU60871.1|1913264_1913648_-	conjugative transposon protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	2.3e-64
AXU60872.1|1913666_1913981_-	conjugative transposon protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
>prophage 7
CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	4122585	2527803	2533825	4122585	transposase	Clostridium_phage(66.67%)	9	NA	NA
AXU61426.1|2527803_2528169_-	phage-related regulatory protein	NA	A0A2R2ZGW3	Clostridioides_phage	67.5	3.2e-39
AXU61427.1|2528288_2528441_-	hypothetical protein	NA	X5JAJ2	Clostridium_phage	59.2	1.6e-05
AXU61428.1|2529755_2530640_-	hypothetical protein	NA	NA	NA	NA	NA
AXU61429.1|2530833_2530986_-	hypothetical protein	NA	J9QED5	Clostridium_phage	52.0	9.6e-06
AXU61430.1|2531259_2531592_-	hypothetical protein	NA	NA	NA	NA	NA
AXU61431.1|2531618_2531873_-	hypothetical protein	NA	NA	NA	NA	NA
AXU61432.1|2532021_2532453_-|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	63.7	3.4e-32
AXU61433.1|2533151_2533343_-	repressor	NA	A0A0A8WFF9	Clostridium_phage	68.9	1.9e-14
AXU61434.1|2533447_2533825_-	regulatory protein	NA	A0A0A8WJU1	Clostridium_phage	90.4	1.8e-53
>prophage 8
CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	4122585	3086868	3095821	4122585		Catovirus(50.0%)	8	NA	NA
AXU61904.1|3086868_3088782_-	capsular polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
AXU61905.1|3088865_3089957_-	capsular polysaccharide biosynthesis glycosyl transferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
AXU61906.1|3089962_3091258_-	UDP-glucose 6-dehydrogenase	NA	A0A127AXI2	Bacillus_phage	43.6	2.9e-90
AXU61907.1|3091283_3092036_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
AXU61908.1|3092083_3092992_-	beta-glycosyltransferase	NA	NA	NA	NA	NA
AXU61909.1|3093013_3093763_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
AXU61910.1|3093791_3094967_-	minor teichoic acid biosynthesis protein	NA	NA	NA	NA	NA
AXU61911.1|3094981_3095821_-	glycosyl transferase	NA	A0A2P1ELT8	Moumouvirus	26.3	7.0e-05
>prophage 9
CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	4122585	3668733	3728585	4122585	protease	Agrobacterium_phage(15.38%)	57	NA	NA
AXU62373.1|3668733_3669813_-|protease	protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	25.7	3.3e-15
AXU62374.1|3669968_3671318_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AXU62375.1|3671582_3673211_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
AXU62376.1|3673334_3674939_-	FAD-dependent dehydrogenase	NA	NA	NA	NA	NA
AXU62377.1|3674986_3675304_-	hypothetical protein	NA	NA	NA	NA	NA
AXU62378.1|3675308_3675674_-	hypothetical protein	NA	NA	NA	NA	NA
AXU62379.1|3675754_3676792_-	protein translocase	NA	NA	NA	NA	NA
AXU62380.1|3677044_3677629_-	hypothetical protein	NA	NA	NA	NA	NA
AXU62381.1|3677643_3678087_-	hypothetical protein	NA	NA	NA	NA	NA
AXU62382.1|3678087_3678960_-	fimbrial assembly protein	NA	NA	NA	NA	NA
AXU62383.1|3679012_3679372_-	type IV pilin	NA	NA	NA	NA	NA
AXU62384.1|3679425_3680511_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU62385.1|3680681_3682031_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU62386.1|3682053_3682734_-	membrane protein	NA	NA	NA	NA	NA
AXU62387.1|3683125_3684205_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
AXU62388.1|3684782_3686153_+	transporter	NA	NA	NA	NA	NA
AXU62389.1|3686417_3687029_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
AXU62390.1|3687018_3689382_-|protease	ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	44.4	4.0e-175
AXU62391.1|3689561_3690074_+	chromate transport protein	NA	NA	NA	NA	NA
AXU62392.1|3690061_3690589_+	chromate transport protein	NA	NA	NA	NA	NA
AXU62393.1|3690659_3691910_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.1	6.1e-146
AXU62394.1|3691928_3692513_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	58.8	9.3e-57
AXU62395.1|3692662_3693949_-	trigger factor	NA	NA	NA	NA	NA
AXU62396.1|3694142_3694613_-	phosphoesterase	NA	NA	NA	NA	NA
AXU62397.1|3694612_3695962_-	ribonuclease PH	NA	NA	NA	NA	NA
AXU62398.1|3696121_3698146_-	DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	37.6	3.8e-113
AXU62399.1|3698331_3699270_-	D-isomer specific 2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AXU62400.1|3699371_3699794_-	hypothetical protein	NA	NA	NA	NA	NA
AXU62401.1|3699981_3701265_+	transporter	NA	NA	NA	NA	NA
AXU62402.1|3701342_3701858_-	electron transport protein	NA	NA	NA	NA	NA
AXU62403.1|3701857_3703234_-	hydrogenase	NA	NA	NA	NA	NA
AXU62404.1|3703258_3703810_-	electron transport protein	NA	NA	NA	NA	NA
AXU62405.1|3703867_3704083_-	hypothetical protein	NA	NA	NA	NA	NA
AXU62406.1|3704051_3704885_-	formate dehydrogenase accessory protein	NA	NA	NA	NA	NA
AXU62407.1|3707328_3708387_-	ABC transporter permease	NA	NA	NA	NA	NA
AXU62408.1|3708597_3709257_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	33.6	4.2e-29
AXU62409.1|3709562_3710192_+	hypothetical protein	NA	NA	NA	NA	NA
AXU62410.1|3710218_3710587_+	hypothetical protein	NA	NA	NA	NA	NA
AXU62411.1|3710671_3711460_-	ABC-2 family transporter protein	NA	NA	NA	NA	NA
AXU62412.1|3711460_3712333_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.8	3.0e-27
AXU62413.1|3712347_3714057_-	hypothetical protein	NA	NA	NA	NA	NA
AXU62414.1|3714203_3714785_-	accessory gene regulator protein	NA	X5JB40	Clostridium_phage	30.4	2.9e-18
AXU62415.1|3714843_3714984_-	autoinducer prepeptide	NA	NA	NA	NA	NA
AXU62416.1|3714995_3716312_-	sensor histidine kinase VirS	NA	X5JAC0	Clostridium_phage	33.2	3.4e-54
AXU62417.1|3716305_3717016_-	LytR family DNA-binding response regulator	NA	A0A2R2ZGH8	Clostridioides_phage	36.2	2.2e-28
AXU62418.1|3717454_3718030_-	hypothetical protein	NA	NA	NA	NA	NA
AXU62419.1|3718322_3718601_-	Mor transcription activator domain-containing protein	NA	NA	NA	NA	NA
AXU62420.1|3718909_3719671_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
AXU62421.1|3719839_3721900_-	exosporium glycoprotein	NA	A0A285PXU9	Cedratvirus	65.5	1.9e-40
AXU62422.1|3721978_3723055_-	glycosyl transferase	NA	A0A1V0SAJ8	Catovirus	25.3	1.3e-16
AXU62423.1|3723366_3723951_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	51.3	3.6e-48
AXU62424.1|3723947_3724430_-	AraC family transcription regulator	NA	NA	NA	NA	NA
AXU62425.1|3724628_3726044_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXU62426.1|3726158_3726827_+	B3/4 domain protein	NA	NA	NA	NA	NA
AXU62427.1|3727002_3727521_-	nitroreductase	NA	NA	NA	NA	NA
AXU62428.1|3727672_3727996_+	transcriptional regulator	NA	NA	NA	NA	NA
AXU62429.1|3728000_3728585_-|protease	protease	protease	NA	NA	NA	NA
