assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003482065.1_ASM348206v1	CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	1	17725-17814	1	CRISPRCasFinder	no		cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	3	17753-17786|17753-17786|17753-17786	CP012321.1_32029-32062|CP012321.1_3020459-3020426|CP012321.1_3828314-3828281	NA	1	1	Orphan	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|87aa|up_3|CP012321.1_8856_9117_+,NA|74aa|down_7|CP012321.1_28404_28626_+,NA|138aa|down_9|CP012321.1_39303_39717_+	NA|369aa|up_9|CP012321.1_1561_2668_+	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|69aa|up_8|CP012321.1_2804_3011_+	pfam13275, S4_2, S4 domain	NA|372aa|up_7|CP012321.1_3028_4144_+	PRK00064, recF, recombination protein F; Reviewed	NA|634aa|up_6|CP012321.1_4144_6046_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|809aa|up_5|CP012321.1_6065_8492_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|99aa|up_4|CP012321.1_8560_8857_+	pfam12732, YtxH, YtxH-like protein	NA|87aa|up_3|CP012321.1_8856_9117_+	NA	NA|106aa|up_2|CP012321.1_9128_9446_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|136aa|up_1|CP012321.1_9449_9857_+	PRK04069, PRK04069, serine-protein kinase RsbW; Provisional	NA|258aa|up_0|CP012321.1_9856_10630_+	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA|170aa|down_0|CP012321.1_21226_21736_+	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only]	NA|294aa|down_1|CP012321.1_21747_22629_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|424aa|down_2|CP012321.1_23087_24359_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|152aa|down_3|CP012321.1_24679_25135_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|546aa|down_4|CP012321.1_25605_27243_+	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|117aa|down_5|CP012321.1_27301_27652_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|200aa|down_6|CP012321.1_27664_28264_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|74aa|down_7|CP012321.1_28404_28626_+	NA	NA|402aa|down_8|CP012321.1_28696_29902_-	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins	NA|138aa|down_9|CP012321.1_39303_39717_+	NA
GCA_003482065.1_ASM348206v1	CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	2	132941-133025	2	CRISPRCasFinder	no		cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTGTGTTAGCACTTTAAGCAAC	23	1	3	132964-133002|132964-133002|132964-133002	CP012321.1_32024-32062|CP012321.1_3020464-3020426|CP012321.1_3828319-3828281	NA	1	1	Orphan	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_7|CP012321.1_165197_165875_+	NA|208aa|up_9|CP012321.1_123382_124006_+	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|316aa|up_8|CP012321.1_124083_125031_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|114aa|up_7|CP012321.1_125051_125393_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|278aa|up_6|CP012321.1_125512_126346_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_5|CP012321.1_126333_127200_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_4|CP012321.1_127193_127997_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_3|CP012321.1_128028_128760_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_2|CP012321.1_128879_129311_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_1|CP012321.1_129339_129732_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_0|CP012321.1_130190_130943_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|down_0|CP012321.1_143410_144595_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|down_1|CP012321.1_144967_147319_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|down_2|CP012321.1_147340_147880_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_3|CP012321.1_160883_161723_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_4|CP012321.1_161719_162901_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_5|CP012321.1_163204_164107_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_6|CP012321.1_164128_165208_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_7|CP012321.1_165197_165875_+	NA	NA|72aa|down_8|CP012321.1_165917_166133_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_9|CP012321.1_166161_167241_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated
GCA_003482065.1_ASM348206v1	CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	3	139825-139909	3	CRISPRCasFinder	no		cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTGTGTTAGCACTTTAAGCAAC	23	1	3	139848-139886|139848-139886|139848-139886	CP012321.1_32024-32062|CP012321.1_3020464-3020426|CP012321.1_3828319-3828281	NA	1	1	Orphan	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_7|CP012321.1_165197_165875_+	NA|208aa|up_9|CP012321.1_123382_124006_+	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|316aa|up_8|CP012321.1_124083_125031_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|114aa|up_7|CP012321.1_125051_125393_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|278aa|up_6|CP012321.1_125512_126346_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_5|CP012321.1_126333_127200_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_4|CP012321.1_127193_127997_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_3|CP012321.1_128028_128760_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_2|CP012321.1_128879_129311_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_1|CP012321.1_129339_129732_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_0|CP012321.1_130190_130943_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|down_0|CP012321.1_143410_144595_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|down_1|CP012321.1_144967_147319_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|down_2|CP012321.1_147340_147880_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_3|CP012321.1_160883_161723_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_4|CP012321.1_161719_162901_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_5|CP012321.1_163204_164107_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_6|CP012321.1_164128_165208_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_7|CP012321.1_165197_165875_+	NA	NA|72aa|down_8|CP012321.1_165917_166133_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_9|CP012321.1_166161_167241_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated
GCA_003482065.1_ASM348206v1	CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	4	148361-148439	4	CRISPRCasFinder	no		cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_4|CP012321.1_165197_165875_+	NA|278aa|up_9|CP012321.1_125512_126346_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|CP012321.1_126333_127200_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|CP012321.1_127193_127997_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|CP012321.1_128028_128760_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|CP012321.1_128879_129311_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|CP012321.1_129339_129732_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|CP012321.1_130190_130943_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|CP012321.1_143410_144595_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|CP012321.1_144967_147319_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|CP012321.1_147340_147880_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|CP012321.1_160883_161723_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|CP012321.1_161719_162901_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|CP012321.1_163204_164107_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|CP012321.1_164128_165208_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|CP012321.1_165197_165875_+	NA	NA|72aa|down_5|CP012321.1_165917_166133_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|CP012321.1_166161_167241_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|CP012321.1_167240_167993_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|CP012321.1_167993_168551_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|CP012321.1_168720_170067_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_003482065.1_ASM348206v1	CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	5	150373-150462	5	CRISPRCasFinder	no		cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	3	150401-150434|150401-150434|150401-150434	CP012321.1_32029-32062|CP012321.1_3020459-3020426|CP012321.1_3828314-3828281	NA	1	1	Orphan	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_4|CP012321.1_165197_165875_+	NA|278aa|up_9|CP012321.1_125512_126346_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|CP012321.1_126333_127200_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|CP012321.1_127193_127997_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|CP012321.1_128028_128760_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|CP012321.1_128879_129311_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|CP012321.1_129339_129732_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|CP012321.1_130190_130943_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|CP012321.1_143410_144595_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|CP012321.1_144967_147319_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|CP012321.1_147340_147880_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|CP012321.1_160883_161723_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|CP012321.1_161719_162901_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|CP012321.1_163204_164107_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|CP012321.1_164128_165208_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|CP012321.1_165197_165875_+	NA	NA|72aa|down_5|CP012321.1_165917_166133_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|CP012321.1_166161_167241_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|CP012321.1_167240_167993_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|CP012321.1_167993_168551_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|CP012321.1_168720_170067_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_003482065.1_ASM348206v1	CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	6	1076554-1076631	6	CRISPRCasFinder	no		cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	AAAAAATAAGAAAGTTTATAAATA	24	0	0	NA	NA	NA	1	1	Orphan	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|64aa|down_8|CP012321.1_1085831_1086023_+,NA|117aa|down_9|CP012321.1_1086245_1086596_+	NA|296aa|up_9|CP012321.1_1061477_1062365_-	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|527aa|up_8|CP012321.1_1063163_1064744_+	COG0063, COG0063, Predicted sugar kinase [Carbohydrate transport and metabolism]	NA|149aa|up_7|CP012321.1_1064921_1065368_+	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|348aa|up_6|CP012321.1_1065388_1066432_+	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|387aa|up_5|CP012321.1_1067202_1068363_+	PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|377aa|up_4|CP012321.1_1068364_1069495_+	TIGR02092, Glycogen_biosynthesis_protein_GlgD, glucose-1-phosphate adenylyltransferase, GlgD subunit	NA|481aa|up_3|CP012321.1_1069523_1070966_+	cd03791, GT5_Glycogen_synthase_DULL1-like, Glycogen synthase GlgA and similar proteins	NA|807aa|up_2|CP012321.1_1070979_1073400_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|622aa|up_1|CP012321.1_1073404_1075270_+	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|218aa|up_0|CP012321.1_1075514_1076168_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|492aa|down_0|CP012321.1_1076805_1078281_+	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|138aa|down_1|CP012321.1_1078367_1078781_+	TIGR03330, SAM_DCase_Bsu, S-adenosylmethionine decarboxylase proenzyme, Bacillus form	NA|284aa|down_2|CP012321.1_1078810_1079662_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|293aa|down_3|CP012321.1_1079651_1080530_+	cd11593, Agmatinase-like_2, Agmatinase and related proteins	NA|67aa|down_4|CP012321.1_1080709_1080910_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|497aa|down_5|CP012321.1_1081376_1082867_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|499aa|down_6|CP012321.1_1083146_1084643_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|309aa|down_7|CP012321.1_1084787_1085714_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|64aa|down_8|CP012321.1_1085831_1086023_+	NA	NA|117aa|down_9|CP012321.1_1086245_1086596_+	NA
GCA_003482065.1_ASM348206v1	CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	7	1548822-1550109	1,7,1	PILER-CR,CRISPRCasFinder,CRT	no	DinG	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type IV-A	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	17,19,18	19	Orphan	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|183aa|up_4|CP012321.1_1543929_1544478_-,NA|51aa|up_0|CP012321.1_1548389_1548542_+,NA|80aa|down_4|CP012321.1_1557255_1557495_+,NA|59aa|down_5|CP012321.1_1557681_1557858_-,NA|45aa|down_9|CP012321.1_1560484_1560619_+	NA|260aa|up_9|CP012321.1_1538245_1539025_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|195aa|up_8|CP012321.1_1539128_1539713_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|477aa|up_7|CP012321.1_1539912_1541343_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_6|CP012321.1_1541660_1542605_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|329aa|up_5|CP012321.1_1542875_1543862_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|183aa|up_4|CP012321.1_1543929_1544478_-	NA	NA|143aa|up_3|CP012321.1_1544629_1545058_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|217aa|up_2|CP012321.1_1545142_1545793_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_1|CP012321.1_1545910_1547266_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|51aa|up_0|CP012321.1_1548389_1548542_+	NA	NA|578aa|down_0|CP012321.1_1550434_1552168_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|282aa|down_1|CP012321.1_1552407_1553253_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|745aa|down_2|CP012321.1_1553283_1555518_-	cd01948, EAL, EAL domain	NA|270aa|down_3|CP012321.1_1556301_1557111_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_4|CP012321.1_1557255_1557495_+	NA	NA|59aa|down_5|CP012321.1_1557681_1557858_-	NA	NA|225aa|down_6|CP012321.1_1558362_1559037_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|185aa|down_7|CP012321.1_1559256_1559811_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|122aa|down_8|CP012321.1_1559888_1560254_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|45aa|down_9|CP012321.1_1560484_1560619_+	NA
GCA_003482065.1_ASM348206v1	CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	8	1660336-1661025	2,8,2	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	9,10,10	10	TypeV	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|190aa|up_7|CP012321.1_1650234_1650804_+,NA|61aa|up_4|CP012321.1_1653745_1653928_-,NA|91aa|down_0|CP012321.1_1661192_1661465_-,NA|323aa|down_5|CP012321.1_1665947_1666916_+	NA|195aa|up_9|CP012321.1_1648593_1649178_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|300aa|up_8|CP012321.1_1649330_1650230_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|190aa|up_7|CP012321.1_1650234_1650804_+	NA	NA|216aa|up_6|CP012321.1_1650970_1651618_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|CP012321.1_1652007_1652922_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|CP012321.1_1653745_1653928_-	NA	NA|283aa|up_3|CP012321.1_1654338_1655187_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|CP012321.1_1655205_1656033_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|299aa|up_1|CP012321.1_1656007_1656904_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|CP012321.1_1657583_1659677_+	cd01948, EAL, EAL domain	NA|91aa|down_0|CP012321.1_1661192_1661465_-	NA	NA|273aa|down_1|CP012321.1_1661683_1662502_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_2|CP012321.1_1662634_1664755_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_3|CP012321.1_1664780_1665008_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_4|CP012321.1_1665334_1665775_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|323aa|down_5|CP012321.1_1665947_1666916_+	NA	NA|403aa|down_6|CP012321.1_1667392_1668601_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_7|CP012321.1_1668661_1669543_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|305aa|down_8|CP012321.1_1669958_1670873_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_9|CP012321.1_1671095_1671641_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain
GCA_003482065.1_ASM348206v1	CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	9	1722538-1722630	9	CRISPRCasFinder	no		cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GATAATTATGAAGTGTACAAACTTTACT	28	0	0	NA	NA	NA	1	1	Orphan	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|161aa|down_8|CP012321.1_1735248_1735731_+	NA|290aa|up_9|CP012321.1_1711295_1712165_+	pfam11738, DUF3298, Protein of unknown function (DUF3298)	NA|252aa|up_8|CP012321.1_1712207_1712963_+	pfam11738, DUF3298, Protein of unknown function (DUF3298)	NA|274aa|up_7|CP012321.1_1713004_1713826_+	pfam13478, XdhC_C, XdhC Rossmann domain	NA|254aa|up_6|CP012321.1_1713830_1714592_+	pfam01863, DUF45, Protein of unknown function DUF45	NA|80aa|up_5|CP012321.1_1715122_1715362_+	pfam13710, ACT_5, ACT domain	NA|330aa|up_4|CP012321.1_1715671_1716661_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|563aa|up_3|CP012321.1_1716713_1718402_+	TIGR00118, Probable_acetolactate_synthase_large_subunit, acetolactate synthase, large subunit, biosynthetic type	NA|226aa|up_2|CP012321.1_1718612_1719290_+	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism]	NA|679aa|up_1|CP012321.1_1719463_1721500_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|189aa|up_0|CP012321.1_1721690_1722257_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|405aa|down_0|CP012321.1_1724009_1725224_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|174aa|down_1|CP012321.1_1725642_1726164_-	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|266aa|down_2|CP012321.1_1726519_1727317_+	cd14667, 3D_containing_proteins, Non-mltA associated 3D domain containing proteins, named for 3 conserved aspartate residues	NA|197aa|down_3|CP012321.1_1727426_1728017_+	cd04501, SGNH_hydrolase_like_4, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	NA|566aa|down_4|CP012321.1_1728082_1729780_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|280aa|down_5|CP012321.1_1729993_1730833_+	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|619aa|down_6|CP012321.1_1731349_1733206_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|406aa|down_7|CP012321.1_1733914_1735132_+	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|161aa|down_8|CP012321.1_1735248_1735731_+	NA	NA|422aa|down_9|CP012321.1_1735995_1737261_+	pfam00815, Histidinol_dh, Histidinol dehydrogenase
GCA_003482065.1_ASM348206v1	CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	10	1834656-1835998	3,10,3	PILER-CR,CRISPRCasFinder,CRT	no		cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	17,20,20	20	Orphan	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|96aa|down_0|CP012321.1_1836406_1836694_+,NA|33aa|down_1|CP012321.1_1836718_1836817_+,NA|59aa|down_6|CP012321.1_1843083_1843260_-,NA|341aa|down_7|CP012321.1_1843834_1844857_+,NA|258aa|down_9|CP012321.1_1845763_1846537_+	NA|200aa|up_9|CP012321.1_1818184_1818784_-	COG4110, COG4110, Uncharacterized protein involved in stress response [General function prediction only]	NA|266aa|up_8|CP012321.1_1818886_1819684_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|329aa|up_7|CP012321.1_1819993_1820980_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_6|CP012321.1_1821463_1823194_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|172aa|up_5|CP012321.1_1823718_1824234_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|825aa|up_4|CP012321.1_1825039_1827514_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_3|CP012321.1_1827513_1828971_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_2|CP012321.1_1829393_1831751_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_1|CP012321.1_1831836_1832154_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|424aa|up_0|CP012321.1_1832737_1834009_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|96aa|down_0|CP012321.1_1836406_1836694_+	NA	NA|33aa|down_1|CP012321.1_1836718_1836817_+	NA	NA|184aa|down_2|CP012321.1_1837232_1837784_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_3|CP012321.1_1837974_1838937_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|615aa|down_4|CP012321.1_1839230_1841075_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|195aa|down_5|CP012321.1_1841396_1841981_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|59aa|down_6|CP012321.1_1843083_1843260_-	NA	NA|341aa|down_7|CP012321.1_1843834_1844857_+	NA	NA|296aa|down_8|CP012321.1_1844870_1845758_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_9|CP012321.1_1845763_1846537_+	NA
GCA_003482065.1_ASM348206v1	CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	11	2528632-2529448	11,4,4	CRISPRCasFinder,CRT,PILER-CR	no	c2c9_V-U4	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type V-U4	ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	12,12,11	12	TypeV-U4	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|138aa|up_7|CP012321.1_2524884_2525298_+,NA|99aa|up_6|CP012321.1_2525316_2525613_+,NA|106aa|up_5|CP012321.1_2525895_2526213_+,NA|155aa|up_4|CP012321.1_2526348_2526813_+,NA|54aa|up_3|CP012321.1_2527141_2527303_-,NA|151aa|up_2|CP012321.1_2527354_2527807_-,NA|51aa|up_0|CP012321.1_2528288_2528441_-,NA|51aa|down_1|CP012321.1_2530833_2530986_-,NA|111aa|down_2|CP012321.1_2531259_2531592_-,NA|85aa|down_3|CP012321.1_2531618_2531873_-	NA|125aa|up_9|CP012321.1_2524074_2524449_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|78aa|up_8|CP012321.1_2524667_2524901_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|138aa|up_7|CP012321.1_2524884_2525298_+	NA	NA|99aa|up_6|CP012321.1_2525316_2525613_+	NA	NA|106aa|up_5|CP012321.1_2525895_2526213_+	NA	NA|155aa|up_4|CP012321.1_2526348_2526813_+	NA	NA|54aa|up_3|CP012321.1_2527141_2527303_-	NA	NA|151aa|up_2|CP012321.1_2527354_2527807_-	NA	NA|122aa|up_1|CP012321.1_2527803_2528169_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|51aa|up_0|CP012321.1_2528288_2528441_-	NA	NA|295aa|down_0|CP012321.1_2529755_2530640_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|51aa|down_1|CP012321.1_2530833_2530986_-	NA	NA|111aa|down_2|CP012321.1_2531259_2531592_-	NA	NA|85aa|down_3|CP012321.1_2531618_2531873_-	NA	c2c9_V-U4|144aa|down_4|CP012321.1_2532021_2532453_-	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain	NA|64aa|down_5|CP012321.1_2533151_2533343_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|126aa|down_6|CP012321.1_2533447_2533825_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|165aa|down_7|CP012321.1_2534629_2535124_+	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|63aa|down_8|CP012321.1_2536155_2536344_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|117aa|down_9|CP012321.1_2536505_2536856_+	pfam12676, DUF3796, Protein of unknown function (DUF3796)
GCA_003482065.1_ASM348206v1	CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	12	2691558-2691715	5	PILER-CR	no	cas3,cas5,cas7,cas6	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	AGGTTTAAGATTAACTAAGTGGATTTCA	28	0	0	NA	NA	NA	2	2	Unclear	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|492aa|down_3|CP012321.1_2696137_2697613_-,NA|59aa|down_5|CP012321.1_2698455_2698632_-	NA|448aa|up_9|CP012321.1_2684014_2685358_-	pfam06898, YqfD, Putative stage IV sporulation protein YqfD	NA|79aa|up_8|CP012321.1_2685370_2685607_-	pfam07873, YabP, YabP family	NA|188aa|up_7|CP012321.1_2685819_2686383_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_6|CP012321.1_2686575_2687073_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_5|CP012321.1_2687183_2687627_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_4|CP012321.1_2687656_2687836_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_3|CP012321.1_2687998_2688349_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_2|CP012321.1_2688391_2689690_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|253aa|up_1|CP012321.1_2689691_2690450_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|CP012321.1_2690468_2691416_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|CP012321.1_2691856_2694265_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|266aa|down_1|CP012321.1_2694291_2695089_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|338aa|down_2|CP012321.1_2695104_2696118_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|492aa|down_3|CP012321.1_2696137_2697613_-	NA	cas6|246aa|down_4|CP012321.1_2697617_2698355_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|59aa|down_5|CP012321.1_2698455_2698632_-	NA	NA|370aa|down_6|CP012321.1_2699065_2700175_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_7|CP012321.1_2700204_2700972_+	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|458aa|down_8|CP012321.1_2701159_2702533_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|312aa|down_9|CP012321.1_2702568_2703504_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
GCA_003482065.1_ASM348206v1	CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	13	2775325-2775880	6,12,5	PILER-CR,CRISPRCasFinder,CRT	no		cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATATGGAATGTAAAT,ATTTACATTCCATATAGTTAATATAAAAC,ATTTACATTCCATATAGTTAATATAAAAC	29,29,29	0	0	NA	NA	I-A:I-A:I-A	8,8,8	8	Orphan	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|53aa|down_0|CP012321.1_2776165_2776324_-	NA|238aa|up_9|CP012321.1_2763662_2764376_-	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism]	NA|451aa|up_8|CP012321.1_2764551_2765904_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|517aa|up_7|CP012321.1_2766000_2767551_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|272aa|up_6|CP012321.1_2767601_2768417_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|161aa|up_5|CP012321.1_2768437_2768920_-	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|127aa|up_4|CP012321.1_2769203_2769584_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|406aa|up_3|CP012321.1_2769678_2770896_-	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|543aa|up_2|CP012321.1_2771554_2773183_+	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase	NA|332aa|up_1|CP012321.1_2773303_2774299_+	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|128aa|up_0|CP012321.1_2774476_2774860_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|53aa|down_0|CP012321.1_2776165_2776324_-	NA	NA|457aa|down_1|CP012321.1_2776682_2778053_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|373aa|down_2|CP012321.1_2778266_2779385_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|223aa|down_3|CP012321.1_2779701_2780370_-	pfam04892, VanZ, VanZ like family	NA|807aa|down_4|CP012321.1_2781223_2783644_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|117aa|down_5|CP012321.1_2783997_2784348_-	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|191aa|down_6|CP012321.1_2784464_2785037_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|230aa|down_7|CP012321.1_2785037_2785727_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|213aa|down_8|CP012321.1_2786002_2786641_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|668aa|down_9|CP012321.1_2786793_2788797_+	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme
GCA_003482065.1_ASM348206v1	CP012321	Clostridioides difficile strain DSM 28666 chromosome, complete genome	18	3274851-3276987	17,6,7	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	32,30,29	32	Unclear	cas14j,RT,cas14k,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|67aa|up_7|CP012321.1_3267745_3267946_+,NA|260aa|up_1|CP012321.1_3273128_3273908_+,NA	NA|740aa|up_9|CP012321.1_3262091_3264311_-	cd01948, EAL, EAL domain	NA|885aa|up_8|CP012321.1_3264587_3267242_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|CP012321.1_3267745_3267946_+	NA	NA|197aa|up_6|CP012321.1_3268152_3268743_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|CP012321.1_3268745_3269621_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|CP012321.1_3269696_3271088_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|CP012321.1_3271091_3272228_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|CP012321.1_3272259_3272805_-	pfam02632, BioY, BioY family	NA|260aa|up_1|CP012321.1_3273128_3273908_+	NA	NA|143aa|up_0|CP012321.1_3274361_3274790_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|CP012321.1_3277170_3277437_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|CP012321.1_3277439_3278420_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|190aa|down_2|CP012321.1_3278422_3278992_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|CP012321.1_3278988_3281310_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|CP012321.1_3281320_3282022_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|CP012321.1_3282023_3282938_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|617aa|down_6|CP012321.1_3282939_3284790_-	pfam09706, Cas_CXXC_CXXC, CRISPR-associated protein (Cas_CXXC_CXXC)	cas6|246aa|down_7|CP012321.1_3284795_3285533_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|296aa|down_8|CP012321.1_3285610_3286498_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|CP012321.1_3286806_3288723_-	pfam02687, FtsX, FtsX-like permease family
