assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003482165.1_ASM348216v1	CP012325	Clostridioides difficile strain DSM 29020 chromosome, complete genome	1	32084-32169	1	CRISPRCasFinder	no		cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Orphan	GTTGGCGCTGTGCATTAGCACTTT	24	1	10	32108-32145|32108-32145|32108-32145|32108-32145|32108-32145|32108-32145|32108-32145|32108-32145|32108-32145|32108-32145	CP012325.1_12378-12415|CP012325.1_1087173-1087210|CP012325.1_3112219-3112182|CP012325.1_3865490-3865453|CP012325.1_3995971-3995934|CP012325.1_17876-17913|CP012325.1_134580-134617|CP012325.1_141464-141501|CP012325.1_152025-152062|CP012325.1_157439-157476	NA	1	1	Orphan	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA|74aa|up_1|CP012325.1_28499_28721_+,NA|138aa|down_0|CP012325.1_39395_39809_+,NA|34aa|down_1|CP012325.1_39816_39918_+	NA|258aa|up_9|CP012325.1_9853_10627_+	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA|170aa|up_8|CP012325.1_21319_21829_+	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only]	NA|294aa|up_7|CP012325.1_21840_22722_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|424aa|up_6|CP012325.1_23180_24452_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|152aa|up_5|CP012325.1_24773_25229_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|546aa|up_4|CP012325.1_25699_27337_+	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|117aa|up_3|CP012325.1_27395_27746_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|200aa|up_2|CP012325.1_27758_28358_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|74aa|up_1|CP012325.1_28499_28721_+	NA	NA|402aa|up_0|CP012325.1_28791_29997_-	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins	NA|138aa|down_0|CP012325.1_39395_39809_+	NA	NA|34aa|down_1|CP012325.1_39816_39918_+	NA	NA|1144aa|down_2|CP012325.1_40121_43553_+	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	NA|643aa|down_3|CP012325.1_43794_45723_+	PRK12740, PRK12740, elongation factor G-like protein EF-G2	NA|158aa|down_4|CP012325.1_46170_46644_+	COG4463, CtsR, Transcriptional repressor of class III stress genes [Transcription]	NA|165aa|down_5|CP012325.1_46650_47145_+	COG3880, COG3880, Modulator of heat shock repressor CtsR, McsA [Signal transduction    mechanisms]	NA|342aa|down_6|CP012325.1_47160_48186_+	PRK01059, PRK01059, ATP:guanido phosphotransferase; Provisional	NA|816aa|down_7|CP012325.1_48172_50620_+	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|458aa|down_8|CP012325.1_50799_52173_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|357aa|down_9|CP012325.1_52175_53246_+	PRK13482, PRK13482, DNA integrity scanning protein DisA; Provisional
GCA_003482165.1_ASM348216v1	CP012325	Clostridioides difficile strain DSM 29020 chromosome, complete genome	2	149998-150076	2	CRISPRCasFinder	no		cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA,NA|226aa|down_4|CP012325.1_166739_167417_+	NA|278aa|up_9|CP012325.1_127132_127966_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|CP012325.1_127953_128820_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|CP012325.1_128813_129617_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|CP012325.1_129649_130381_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|CP012325.1_130500_130932_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|CP012325.1_130960_131353_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|CP012325.1_131813_132566_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|CP012325.1_145048_146233_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|CP012325.1_146605_148957_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|CP012325.1_148978_149518_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|CP012325.1_162425_163265_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|CP012325.1_163261_164443_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|CP012325.1_164746_165649_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|CP012325.1_165670_166750_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|CP012325.1_166739_167417_+	NA	NA|72aa|down_5|CP012325.1_167459_167675_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|CP012325.1_167703_168783_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|CP012325.1_168782_169535_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|CP012325.1_169535_170093_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|CP012325.1_170264_171611_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_003482165.1_ASM348216v1	CP012325	Clostridioides difficile strain DSM 29020 chromosome, complete genome	3	635671-635778	3	CRISPRCasFinder	no	cas14j	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Unclear	TATTAATTGTATTTACTTATTTGATTG	27	0	0	NA	NA	NA	1	1	TypeV	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA|106aa|up_5|CP012325.1_630149_630467_+,NA|254aa|up_2|CP012325.1_633277_634039_+,NA|78aa|down_6|CP012325.1_644744_644978_-	NA|286aa|up_9|CP012325.1_626306_627164_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|157aa|up_8|CP012325.1_627357_627828_+	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|283aa|up_7|CP012325.1_627862_628711_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|335aa|up_6|CP012325.1_628998_630003_+	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea	NA|106aa|up_5|CP012325.1_630149_630467_+	NA	cas14j|370aa|up_4|CP012325.1_631119_632229_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|232aa|up_3|CP012325.1_632427_633123_+	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea	NA|254aa|up_2|CP012325.1_633277_634039_+	NA	NA|273aa|up_1|CP012325.1_634041_634860_+	pfam08812, YtxC, YtxC-like family	NA|201aa|up_0|CP012325.1_635038_635641_+	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|640aa|down_0|CP012325.1_636433_638353_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|364aa|down_1|CP012325.1_639077_640169_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|66aa|down_2|CP012325.1_640516_640714_-	pfam03551, PadR, Transcriptional regulator PadR-like family	NA|447aa|down_3|CP012325.1_641073_642414_+	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing	NA|190aa|down_4|CP012325.1_642755_643325_-	COG2316, COG2316, Predicted hydrolase (HD superfamily) [General function prediction only]	NA|417aa|down_5|CP012325.1_643485_644736_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_6|CP012325.1_644744_644978_-	NA	NA|193aa|down_7|CP012325.1_645028_645607_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|487aa|down_8|CP012325.1_645907_647368_+	cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11	NA|202aa|down_9|CP012325.1_647736_648342_+	COG1309, AcrR, Transcriptional regulator [Transcription]
GCA_003482165.1_ASM348216v1	CP012325	Clostridioides difficile strain DSM 29020 chromosome, complete genome	6	1283329-1283955	2,6,1	PILER-CR,CRISPRCasFinder,CRT	no		cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG	29,29,29	1	1	1283559-1283596	CP012325.1_42251-42288	I-A:I-A:I-A	8,9,9	9	Orphan	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA|271aa|up_2|CP012325.1_1280448_1281261_+,NA|53aa|up_0|CP012325.1_1282883_1283042_+,NA|84aa|down_0|CP012325.1_1284345_1284597_+,NA|63aa|down_1|CP012325.1_1284761_1284950_-,NA|220aa|down_2|CP012325.1_1285407_1286067_-,NA|65aa|down_5|CP012325.1_1288201_1288396_-,NA|121aa|down_7|CP012325.1_1289871_1290234_+,NA|138aa|down_9|CP012325.1_1290962_1291376_+	NA|442aa|up_9|CP012325.1_1271911_1273237_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|360aa|up_8|CP012325.1_1273449_1274529_+	pfam02618, YceG, YceG-like family	NA|225aa|up_7|CP012325.1_1274700_1275375_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_6|CP012325.1_1275361_1276609_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|555aa|up_5|CP012325.1_1276680_1278345_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|95aa|up_4|CP012325.1_1278442_1278727_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|505aa|up_3|CP012325.1_1278752_1280267_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|271aa|up_2|CP012325.1_1280448_1281261_+	NA	NA|482aa|up_1|CP012325.1_1281300_1282746_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|53aa|up_0|CP012325.1_1282883_1283042_+	NA	NA|84aa|down_0|CP012325.1_1284345_1284597_+	NA	NA|63aa|down_1|CP012325.1_1284761_1284950_-	NA	NA|220aa|down_2|CP012325.1_1285407_1286067_-	NA	NA|146aa|down_3|CP012325.1_1286122_1286560_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|170aa|down_4|CP012325.1_1287583_1288093_+	pfam04892, VanZ, VanZ like family	NA|65aa|down_5|CP012325.1_1288201_1288396_-	NA	NA|139aa|down_6|CP012325.1_1288888_1289305_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|121aa|down_7|CP012325.1_1289871_1290234_+	NA	NA|240aa|down_8|CP012325.1_1290217_1290937_+	PRK00448, polC, DNA polymerase III PolC; Validated	NA|138aa|down_9|CP012325.1_1290962_1291376_+	NA
GCA_003482165.1_ASM348216v1	CP012325	Clostridioides difficile strain DSM 29020 chromosome, complete genome	7	1619603-1619700	7	CRISPRCasFinder	no		cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Orphan	TTATATTAACATAACTATATTTTACTTGATAAA	33	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA,NA	NA|294aa|up_9|CP012325.1_1608795_1609677_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|305aa|up_8|CP012325.1_1610092_1611007_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|up_7|CP012325.1_1611229_1611775_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain	NA|383aa|up_6|CP012325.1_1611865_1613014_+	COG2006, COG2006, Uncharacterized conserved protein [Function unknown]	NA|422aa|up_5|CP012325.1_1613066_1614332_+	PRK09357, pyrC, dihydroorotase; Validated	NA|411aa|up_4|CP012325.1_1614616_1615849_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|225aa|up_3|CP012325.1_1615851_1616526_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|411aa|up_2|CP012325.1_1616533_1617766_-	COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane]	NA|335aa|up_1|CP012325.1_1617876_1618881_-	cd16948, HATPase_BceS-YxdK-YvcQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis BceS, YxdK, and Bacillus thuringiensis YvcQ	NA|225aa|up_0|CP012325.1_1618904_1619579_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|256aa|down_0|CP012325.1_1619866_1620634_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|646aa|down_1|CP012325.1_1620620_1622558_+	pfam02687, FtsX, FtsX-like permease family	NA|538aa|down_2|CP012325.1_1622789_1624403_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|284aa|down_3|CP012325.1_1624530_1625382_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|298aa|down_4|CP012325.1_1626007_1626901_+	PRK06222, PRK06222, sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein	NA|465aa|down_5|CP012325.1_1626900_1628295_+	PRK12831, PRK12831, putative oxidoreductase; Provisional	NA|740aa|down_6|CP012325.1_1628659_1630879_+	cd01948, EAL, EAL domain	NA|272aa|down_7|CP012325.1_1630962_1631778_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|down_8|CP012325.1_1631777_1633658_+	pfam02687, FtsX, FtsX-like permease family	NA|464aa|down_9|CP012325.1_1633776_1635168_+	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA
GCA_003482165.1_ASM348216v1	CP012325	Clostridioides difficile strain DSM 29020 chromosome, complete genome	8	1766348-1767496	3,8,2	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Unclear	GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	17,17,17	17	TypeV	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA,NA|96aa|down_0|CP012325.1_1768066_1768354_+,NA|38aa|down_4|CP012325.1_1772720_1772834_+,NA|33aa|down_5|CP012325.1_1772913_1773012_-,NA|59aa|down_6|CP012325.1_1773872_1774049_-,NA|341aa|down_7|CP012325.1_1775097_1776120_+,NA|257aa|down_9|CP012325.1_1777028_1777799_+	NA|266aa|up_9|CP012325.1_1749224_1750022_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|329aa|up_8|CP012325.1_1750331_1751318_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_7|CP012325.1_1751801_1753532_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|825aa|up_6|CP012325.1_1754814_1757289_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_5|CP012325.1_1757288_1758746_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_4|CP012325.1_1759163_1761521_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_3|CP012325.1_1761605_1761923_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|146aa|up_2|CP012325.1_1762454_1762892_-	cd01303, GDEase, Guanine deaminase (GDEase)	cas14j|370aa|up_1|CP012325.1_1763025_1764135_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|276aa|up_0|CP012325.1_1764874_1765702_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|96aa|down_0|CP012325.1_1768066_1768354_+	NA	NA|184aa|down_1|CP012325.1_1768888_1769440_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_2|CP012325.1_1769630_1770593_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|616aa|down_3|CP012325.1_1770873_1772721_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|38aa|down_4|CP012325.1_1772720_1772834_+	NA	NA|33aa|down_5|CP012325.1_1772913_1773012_-	NA	NA|59aa|down_6|CP012325.1_1773872_1774049_-	NA	NA|341aa|down_7|CP012325.1_1775097_1776120_+	NA	NA|296aa|down_8|CP012325.1_1776132_1777020_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|257aa|down_9|CP012325.1_1777028_1777799_+	NA
GCA_003482165.1_ASM348216v1	CP012325	Clostridioides difficile strain DSM 29020 chromosome, complete genome	9	2244215-2247210	9,3,4	CRISPRCasFinder,CRT,PILER-CR	no	csa3	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Type I-A	CTTTACATACCACATAGTTAATATAAAAC,CTTTACATACCACATAGTTAATATAAAAC,GTTTTATATTAACTATGTGGTATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	45,45,44	45	Orphan	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA|124aa|up_9|CP012325.1_2239170_2239542_-,NA|68aa|up_7|CP012325.1_2240678_2240882_+,NA|125aa|up_6|CP012325.1_2240900_2241275_+,NA|65aa|up_5|CP012325.1_2241542_2241737_-,NA|41aa|up_4|CP012325.1_2242027_2242150_-,NA|120aa|up_3|CP012325.1_2242273_2242633_-,NA|86aa|up_2|CP012325.1_2242646_2242904_-,NA|78aa|up_1|CP012325.1_2242890_2243124_-,NA|51aa|down_0|CP012325.1_2247488_2247641_-,NA|55aa|down_2|CP012325.1_2250627_2250792_-,NA|45aa|down_5|CP012325.1_2253453_2253588_-	NA|124aa|up_9|CP012325.1_2239170_2239542_-	NA	NA|191aa|up_8|CP012325.1_2239984_2240557_-	pfam10543, ORF6N, ORF6N domain	NA|68aa|up_7|CP012325.1_2240678_2240882_+	NA	NA|125aa|up_6|CP012325.1_2240900_2241275_+	NA	NA|65aa|up_5|CP012325.1_2241542_2241737_-	NA	NA|41aa|up_4|CP012325.1_2242027_2242150_-	NA	NA|120aa|up_3|CP012325.1_2242273_2242633_-	NA	NA|86aa|up_2|CP012325.1_2242646_2242904_-	NA	NA|78aa|up_1|CP012325.1_2242890_2243124_-	NA	NA|63aa|up_0|CP012325.1_2243311_2243500_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|51aa|down_0|CP012325.1_2247488_2247641_-	NA	NA|282aa|down_1|CP012325.1_2249558_2250404_+	pfam13026, DUF3887, Protein of unknown function (DUF3887)	NA|55aa|down_2|CP012325.1_2250627_2250792_-	NA	NA|214aa|down_3|CP012325.1_2251914_2252556_-	COG5658, COG5658, Predicted integral membrane protein [Function unknown]	csa3|99aa|down_4|CP012325.1_2252536_2252833_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|45aa|down_5|CP012325.1_2253453_2253588_-	NA	NA|251aa|down_6|CP012325.1_2253798_2254551_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|552aa|down_7|CP012325.1_2254611_2256267_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|121aa|down_8|CP012325.1_2256278_2256641_-	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|123aa|down_9|CP012325.1_2256955_2257324_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB
GCA_003482165.1_ASM348216v1	CP012325	Clostridioides difficile strain DSM 29020 chromosome, complete genome	10	2294084-2294972	10,4,5	CRISPRCasFinder,CRT,PILER-CR	no		cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Orphan	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	13,13,12	13	Orphan	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA|40aa|up_7|CP012325.1_2286344_2286464_-,NA|95aa|up_0|CP012325.1_2293083_2293368_-,NA|206aa|down_7|CP012325.1_2303389_2304007_-,NA|567aa|down_8|CP012325.1_2304176_2305877_-,NA|188aa|down_9|CP012325.1_2306181_2306745_-	NA|406aa|up_9|CP012325.1_2283782_2285000_-	cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ	NA|345aa|up_8|CP012325.1_2285040_2286075_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|40aa|up_7|CP012325.1_2286344_2286464_-	NA	NA|256aa|up_6|CP012325.1_2286752_2287520_-	pfam14268, YoaP, YoaP-like	NA|158aa|up_5|CP012325.1_2287812_2288286_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|186aa|up_4|CP012325.1_2288666_2289224_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|233aa|up_3|CP012325.1_2289481_2290180_+	TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family	NA|156aa|up_2|CP012325.1_2291165_2291633_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|72aa|up_1|CP012325.1_2291643_2291859_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|95aa|up_0|CP012325.1_2293083_2293368_-	NA	NA|291aa|down_0|CP012325.1_2295607_2296480_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|193aa|down_1|CP012325.1_2296873_2297452_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|239aa|down_2|CP012325.1_2297508_2298225_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|362aa|down_3|CP012325.1_2298415_2299501_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|219aa|down_4|CP012325.1_2299654_2300311_-	pfam03154, Atrophin-1, Atrophin-1 family	NA|431aa|down_5|CP012325.1_2300525_2301818_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|398aa|down_6|CP012325.1_2301835_2303029_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|206aa|down_7|CP012325.1_2303389_2304007_-	NA	NA|567aa|down_8|CP012325.1_2304176_2305877_-	NA	NA|188aa|down_9|CP012325.1_2306181_2306745_-	NA
GCA_003482165.1_ASM348216v1	CP012325	Clostridioides difficile strain DSM 29020 chromosome, complete genome	11	2405074-2407672	11,5,6	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Type I-B	ATTTAAATACATCTCATGTTACTGTTTAAC,ATTTAAATACATCTCATGTTACTGTTTAAC,ATTTAAATACATCTCATGTTACTGTTTAAC	30,30,30	0	0	NA	NA	III-B:III-B:III-B	39,39,38	39	TypeI-B	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA|75aa|up_9|CP012325.1_2395303_2395528_-,NA|275aa|up_7|CP012325.1_2397322_2398147_-,NA|69aa|down_5|CP012325.1_2415157_2415364_+,NA|194aa|down_6|CP012325.1_2415799_2416381_+	NA|75aa|up_9|CP012325.1_2395303_2395528_-	NA	NA|375aa|up_8|CP012325.1_2395724_2396849_+	pfam12725, DUF3810, Protein of unknown function (DUF3810)	NA|275aa|up_7|CP012325.1_2397322_2398147_-	NA	NA|352aa|up_6|CP012325.1_2398494_2399550_-	pfam04551, GcpE, GcpE protein	NA|335aa|up_5|CP012325.1_2399732_2400737_-	pfam02163, Peptidase_M50, Peptidase family M50	NA|385aa|up_4|CP012325.1_2400749_2401904_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|68aa|up_3|CP012325.1_2402067_2402271_-	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	cas2|97aa|up_2|CP012325.1_2402960_2403251_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|333aa|up_1|CP012325.1_2403461_2404460_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|165aa|up_0|CP012325.1_2404494_2404989_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|853aa|down_0|CP012325.1_2407861_2410420_-	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas5|247aa|down_1|CP012325.1_2410443_2411184_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7b|330aa|down_2|CP012325.1_2411185_2412175_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8b1|580aa|down_3|CP012325.1_2412167_2413907_-	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI	cas6|232aa|down_4|CP012325.1_2413918_2414614_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|69aa|down_5|CP012325.1_2415157_2415364_+	NA	NA|194aa|down_6|CP012325.1_2415799_2416381_+	NA	NA|607aa|down_7|CP012325.1_2416465_2418286_-	cd01948, EAL, EAL domain	NA|48aa|down_8|CP012325.1_2418671_2418815_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|260aa|down_9|CP012325.1_2419343_2420123_-	pfam01148, CTP_transf_1, Cytidylyltransferase family
GCA_003482165.1_ASM348216v1	CP012325	Clostridioides difficile strain DSM 29020 chromosome, complete genome	15	3358359-3360480	15,6,7	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	Unclear	CTTTACATACCACTTAGTTAATATAAAAC,CTTTACATACCACTTAGTTAATATAAAAC,TTTTATATTAACTAAGTGGTATGTAAAG	29,29,28	0	0	NA	NA	I-A:I-A:I-A	32,32,32	32	Unclear	cas14j,csa3,c2c9_V-U4,WYL,cas3,DEDDh,DinG,RT,cas14k,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7,cas8b2	NA|67aa|up_7|CP012325.1_3351264_3351465_+,NA|257aa|up_1|CP012325.1_3356636_3357407_+,NA	NA|740aa|up_9|CP012325.1_3345611_3347831_-	cd01948, EAL, EAL domain	NA|885aa|up_8|CP012325.1_3348106_3350761_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|CP012325.1_3351264_3351465_+	NA	NA|197aa|up_6|CP012325.1_3351671_3352262_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|CP012325.1_3352264_3353140_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|CP012325.1_3353215_3354607_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|CP012325.1_3354610_3355747_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|CP012325.1_3355767_3356313_-	pfam02632, BioY, BioY family	NA|257aa|up_1|CP012325.1_3356636_3357407_+	NA	NA|143aa|up_0|CP012325.1_3357869_3358298_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|CP012325.1_3360663_3360930_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|CP012325.1_3360932_3361913_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|190aa|down_2|CP012325.1_3361915_3362485_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|CP012325.1_3362481_3364803_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|CP012325.1_3364813_3365515_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|CP012325.1_3365516_3366431_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|617aa|down_6|CP012325.1_3366432_3368283_-	pfam09706, Cas_CXXC_CXXC, CRISPR-associated protein (Cas_CXXC_CXXC)	cas6|246aa|down_7|CP012325.1_3368288_3369026_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|296aa|down_8|CP012325.1_3369103_3369991_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|CP012325.1_3370299_3372216_-	pfam02687, FtsX, FtsX-like permease family
